Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001538/0.001538, allocations: 100.4 kB / 19.71 MB, free: 440 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001269/0.001269, allocations: 215.3 kB / 23 MB, free: 2.98 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.024/1.024, allocations: 230.6 MB / 256.8 MB, free: 9.613 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.798/1.798, allocations: 334.3 MB / 0.6323 GB, free: 7.918 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.001643/0.001643, allocations: 67.89 kB / 0.867 GB, free: 8.145 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1814/0.183, allocations: 112.8 MB / 0.9772 GB, free: 7.062 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic): time 0.4143/0.5973, allocations: 13.52 MB / 0.9904 GB, free: 18.75 MB / 0.698 GB Notification: Performance of NFInst.instExpressions: time 0.006651/0.6039, allocations: 3.404 MB / 0.9937 GB, free: 18.61 MB / 0.698 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001243/0.6051, allocations: 35.88 kB / 0.9938 GB, free: 18.6 MB / 0.698 GB Notification: Performance of NFTyping.typeComponents: time 0.00118/0.6063, allocations: 0.501 MB / 0.9942 GB, free: 18.36 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.002312/0.6086, allocations: 1.036 MB / 0.9953 GB, free: 17.9 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.001991/0.6106, allocations: 0.9124 MB / 0.9961 GB, free: 17.88 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.003886/0.6145, allocations: 3.755 MB / 0.9998 GB, free: 16.79 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0009925/0.6155, allocations: 0.5342 MB / 1 GB, free: 16.5 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.002446/0.618, allocations: 1.288 MB / 1.002 GB, free: 15.88 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.002397/0.6203, allocations: 1.324 MB / 1.003 GB, free: 15.29 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 0.0007869/0.6211, allocations: 337.2 kB / 1.003 GB, free: 15.29 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.001236/0.6224, allocations: 484.2 kB / 1.004 GB, free: 15.24 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 0.0006376/0.623, allocations: 0.6926 MB / 1.004 GB, free: 14.79 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.00205/0.6251, allocations: 1.345 MB / 1.006 GB, free: 14.06 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.005645/0.6307, allocations: 4.156 MB / 1.01 GB, free: 12.38 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 6.773e-06/0.6307, allocations: 0 / 1.01 GB, free: 12.38 MB / 0.698 GB Notification: Performance of FrontEnd: time 1.573e-06/0.6307, allocations: 0 / 1.01 GB, free: 12.38 MB / 0.698 GB Notification: Performance of Transformations before backend: time 0.0001096/0.6308, allocations: 1.219 kB / 1.01 GB, free: 12.38 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 486 * Number of variables: 486 Notification: Performance of Generate backend data structure: time 0.006183/0.637, allocations: 4.261 MB / 1.014 GB, free: 9.215 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 5.889e-05/0.6371, allocations: 15.58 kB / 1.014 GB, free: 9.211 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001308/0.6384, allocations: 458.2 kB / 1.014 GB, free: 9 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.002123/0.6405, allocations: 1.357 MB / 1.016 GB, free: 8.113 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.000152/0.6406, allocations: 142.8 kB / 1.016 GB, free: 8.059 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003797/0.641, allocations: 224.9 kB / 1.016 GB, free: 7.984 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.004571/0.6456, allocations: 3.646 MB / 1.02 GB, free: 5.887 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 0.0001066/0.6457, allocations: 36.2 kB / 1.02 GB, free: 5.863 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001493/0.6459, allocations: 79.11 kB / 1.02 GB, free: 5.812 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.786e-05/0.6459, allocations: 43.91 kB / 1.02 GB, free: 5.812 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.004103/0.65, allocations: 3.292 MB / 1.023 GB, free: 4.043 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.008602/0.6586, allocations: 5.869 MB / 1.029 GB, free: 0.5234 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.003756/0.6624, allocations: 3.257 MB / 1.032 GB, free: 14.57 MB / 0.7137 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.002186/0.6645, allocations: 2.431 MB / 1.034 GB, free: 12.8 MB / 0.7137 GB Notification: Performance of preOpt evalFunc (simulation): time 7.857e-05/0.6646, allocations: 35.67 kB / 1.034 GB, free: 12.79 MB / 0.7137 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.003621/0.6682, allocations: 4.219 MB / 1.038 GB, free: 9.258 MB / 0.7137 GB Notification: Performance of pre-optimization done (n=300): time 5.069e-06/0.6683, allocations: 0 / 1.038 GB, free: 9.258 MB / 0.7137 GB Notification: Performance of matching and sorting (n=318): time 0.01736/0.6856, allocations: 17.03 MB / 1.055 GB, free: 13.15 MB / 0.7293 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0009322/0.6865, allocations: 1.982 MB / 1.057 GB, free: 10.79 MB / 0.7293 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002554/0.6891, allocations: 1.972 MB / 1.059 GB, free: 9.703 MB / 0.7293 GB Notification: Performance of collectPreVariables (initialization): time 0.0002007/0.6893, allocations: 122 kB / 1.059 GB, free: 9.617 MB / 0.7293 GB Notification: Performance of collectInitialEqns (initialization): time 0.0007526/0.69, allocations: 1.046 MB / 1.06 GB, free: 8.695 MB / 0.7293 GB Notification: Performance of collectInitialBindings (initialization): time 0.0007049/0.6908, allocations: 1.022 MB / 1.061 GB, free: 7.82 MB / 0.7293 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0007429/0.6915, allocations: 0.5401 MB / 1.062 GB, free: 7.52 MB / 0.7293 GB Notification: Performance of setup shared object (initialization): time 7.322e-05/0.6916, allocations: 302.3 kB / 1.062 GB, free: 7.223 MB / 0.7293 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002727/0.6943, allocations: 2.817 MB / 1.065 GB, free: 5.109 MB / 0.7293 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.003512/0.6978, allocations: 3.618 MB / 1.068 GB, free: 1.969 MB / 0.7293 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.01156/0.7094, allocations: 11.56 MB / 1.079 GB, free: 8.625 MB / 0.7449 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.532e-05/0.7094, allocations: 8 kB / 1.079 GB, free: 8.617 MB / 0.7449 GB Notification: Performance of matching and sorting (n=462) (initialization): time 0.007536/0.7169, allocations: 7.014 MB / 1.086 GB, free: 1.148 MB / 0.7449 GB Notification: Performance of prepare postOptimizeDAE: time 0.0003545/0.7173, allocations: 1.017 MB / 1.087 GB, free: 15.91 MB / 0.7605 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.457e-05/0.7173, allocations: 20 kB / 1.087 GB, free: 15.89 MB / 0.7605 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.321e-05/0.7173, allocations: 40 kB / 1.087 GB, free: 15.86 MB / 0.7605 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001231/0.7186, allocations: 0.6395 MB / 1.088 GB, free: 15.21 MB / 0.7605 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.563e-05/0.7186, allocations: 51.86 kB / 1.088 GB, free: 15.16 MB / 0.7605 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001201/0.7198, allocations: 159.9 kB / 1.088 GB, free: 15.01 MB / 0.7605 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003302/0.7201, allocations: 409.8 kB / 1.089 GB, free: 14.61 MB / 0.7605 GB Warning: Assuming fixed start value for the following 84 variables: patient_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 96 * Number of states: 0 () * Number of discrete variables: 186 ($PRE.ref.peripheral.Cmin,ref.peripheral.Cmin,$PRE.ref.peripheral.Cmax,ref.peripheral.Cmax,$PRE.ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.Cmin,$PRE.ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmax,$PRE.ref.central.Cmin,ref.central.Cmin,$PRE.ref.central.Cmax,ref.central.Cmax,$PRE.ref_low.peripheral.Cmin,ref_low.peripheral.Cmin,$PRE.ref_low.peripheral.Cmax,ref_low.peripheral.Cmax,$PRE.ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.Cmin,$PRE.ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmax,$PRE.ref_low.central.Cmin,ref_low.central.Cmin,$PRE.ref_low.central.Cmax,ref_low.central.Cmax,$PRE.ref_high.peripheral.Cmin,ref_high.peripheral.Cmin,$PRE.ref_high.peripheral.Cmax,ref_high.peripheral.Cmax,$PRE.ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.Cmin,$PRE.ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmax,$PRE.ref_high.central.Cmin,ref_high.central.Cmin,$PRE.ref_high.central.Cmax,ref_high.central.Cmax,$PRE.patient.peripheral.Cmin,patient.peripheral.Cmin,$PRE.patient.peripheral.Cmax,patient.peripheral.Cmax,$PRE.patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.Cmin,$PRE.patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmax,$PRE.patient.central.Cmin,patient.central.Cmin,$PRE.patient.central.Cmax,patient.central.Cmax,$PRE.patient_low.peripheral.Cmin,patient_low.peripheral.Cmin,$PRE.patient_low.peripheral.Cmax,patient_low.peripheral.Cmax,$PRE.patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.Cmin,$PRE.patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmax,$PRE.patient_low.central.Cmin,patient_low.central.Cmin,$PRE.patient_low.central.Cmax,patient_low.central.Cmax,$PRE.patient_high.peripheral.Cmin,patient_high.peripheral.Cmin,$PRE.patient_high.peripheral.Cmax,patient_high.peripheral.Cmax,$PRE.patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.Cmin,$PRE.patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmax,$PRE.patient_high.central.Cmin,patient_high.central.Cmin,$PRE.patient_high.central.Cmax,patient_high.central.Cmax,$PRE.ref.peripheral.rising,$PRE.ref.periodicDose.pulse.count,$PRE.ref.periodicDose.pulse.T_start,$PRE.ref.periodicDose.absorptionLumen.rising,$PRE.ref.central.rising,ref.CYP2C19.status,ref.SLC22A2.status,ref.peripheral.rising,ref.periodicDose.pulse.count,ref.periodicDose.pulse.T_start,ref.periodicDose.absorptionLumen.rising,ref.central.rising,$whenCondition41,$whenCondition40,$whenCondition39,$whenCondition38,$whenCondition37,$whenCondition36,$whenCondition42,$PRE.ref_low.peripheral.rising,$PRE.ref_low.periodicDose.pulse.count,$PRE.ref_low.periodicDose.pulse.T_start,$PRE.ref_low.periodicDose.absorptionLumen.rising,$PRE.ref_low.central.rising,ref_low.CYP2C19.status,ref_low.SLC22A2.status,ref_low.peripheral.rising,ref_low.periodicDose.pulse.count,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.rising,$whenCondition34,$whenCondition33,$whenCondition32,$whenCondition31,$whenCondition30,$whenCondition29,$whenCondition35,$PRE.ref_high.peripheral.rising,$PRE.ref_high.periodicDose.pulse.count,$PRE.ref_high.periodicDose.pulse.T_start,$PRE.ref_high.periodicDose.absorptionLumen.rising,$PRE.ref_high.central.rising,ref_high.CYP2C19.status,ref_high.SLC22A2.status,ref_high.peripheral.rising,ref_high.periodicDose.pulse.count,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.rising,$whenCondition27,$whenCondition26,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition28,$PRE.patient.peripheral.rising,$PRE.patient.periodicDose.pulse.count,$PRE.patient.periodicDose.pulse.T_start,$PRE.patient.periodicDose.absorptionLumen.rising,$PRE.patient.central.rising,patient.CYP2C19.status,patient.SLC22A2.status,patient.peripheral.rising,patient.periodicDose.pulse.count,patient.periodicDose.pulse.T_start,patient.periodicDose.absorptionLumen.rising,patient.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$whenCondition15,$whenCondition21,$PRE.patient_low.peripheral.rising,$PRE.patient_low.periodicDose.pulse.count,$PRE.patient_low.periodicDose.pulse.T_start,$PRE.patient_low.periodicDose.absorptionLumen.rising,$PRE.patient_low.central.rising,patient_low.CYP2C19.status,patient_low.SLC22A2.status,patient_low.peripheral.rising,patient_low.periodicDose.pulse.count,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.rising,$whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition14,$PRE.patient_high.peripheral.rising,$PRE.patient_high.periodicDose.pulse.count,$PRE.patient_high.periodicDose.pulse.T_start,$PRE.patient_high.periodicDose.absorptionLumen.rising,$PRE.patient_high.central.rising,patient_high.CYP2C19.status,patient_high.SLC22A2.status,patient_high.peripheral.rising,patient_high.periodicDose.pulse.count,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (426): * Single equations (assignments): 390 * Array equations: 0 * Algorithm blocks: 36 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001799/0.7219, allocations: 1.985 MB / 1.09 GB, free: 12.45 MB / 0.7605 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004563/0.7224, allocations: 334 kB / 1.091 GB, free: 12.12 MB / 0.7605 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002624/0.7227, allocations: 271.5 kB / 1.091 GB, free: 11.86 MB / 0.7605 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.422e-05/0.7227, allocations: 24 kB / 1.091 GB, free: 11.83 MB / 0.7605 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 3.665e-05/0.7227, allocations: 4 kB / 1.091 GB, free: 11.83 MB / 0.7605 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0001506/0.7229, allocations: 11.95 kB / 1.091 GB, free: 11.82 MB / 0.7605 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.008103/0.731, allocations: 9.089 MB / 1.1 GB, free: 2.375 MB / 0.7605 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.502e-06/0.731, allocations: 4 kB / 1.1 GB, free: 2.371 MB / 0.7605 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001154/0.7321, allocations: 467.3 kB / 1.1 GB, free: 1.914 MB / 0.7605 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.049e-05/0.7321, allocations: 8 kB / 1.1 GB, free: 1.906 MB / 0.7605 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001645/0.7323, allocations: 119.9 kB / 1.101 GB, free: 1.789 MB / 0.7605 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 7.865e-06/0.7323, allocations: 11.98 kB / 1.101 GB, free: 1.777 MB / 0.7605 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.915e-06/0.7323, allocations: 4 kB / 1.101 GB, free: 1.773 MB / 0.7605 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00835/0.7407, allocations: 10.21 MB / 1.111 GB, free: 6.941 MB / 0.7762 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0008535/0.7415, allocations: 0.5954 MB / 1.111 GB, free: 6.344 MB / 0.7762 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003618/0.7419, allocations: 136 kB / 1.111 GB, free: 6.211 MB / 0.7762 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0007681/0.7426, allocations: 119.9 kB / 1.111 GB, free: 6.094 MB / 0.7762 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003554/0.743, allocations: 273.8 kB / 1.112 GB, free: 5.828 MB / 0.7762 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0003171/0.7433, allocations: 378.9 kB / 1.112 GB, free: 5.461 MB / 0.7762 GB Notification: Performance of sorting global known variables: time 0.001335/0.7447, allocations: 1.335 MB / 1.113 GB, free: 4.109 MB / 0.7762 GB Notification: Performance of sort global known variables: time 9.1e-08/0.7447, allocations: 4 kB / 1.113 GB, free: 4.105 MB / 0.7762 GB Notification: Performance of remove unused functions: time 0.001699/0.7464, allocations: 0.7617 MB / 1.114 GB, free: 3.344 MB / 0.7762 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 54 (patient_high.central.C,patient_high.central.AUC,patient_high.elim.MExc,patient_high.periodicDose.TotalCumulativeMass,patient_high.periodicDose.absorptionLumen.C,patient_high.periodicDose.absorptionLumen.AUC,patient_high.periodicDose.variableDose.TotalCumulativeMass,patient_high.peripheral.C,patient_high.peripheral.AUC,patient_low.central.C,patient_low.central.AUC,patient_low.elim.MExc,patient_low.periodicDose.TotalCumulativeMass,patient_low.periodicDose.absorptionLumen.C,patient_low.periodicDose.absorptionLumen.AUC,patient_low.periodicDose.variableDose.TotalCumulativeMass,patient_low.peripheral.C,patient_low.peripheral.AUC,patient.central.C,patient.central.AUC,patient.elim.MExc,patient.periodicDose.TotalCumulativeMass,patient.periodicDose.absorptionLumen.C,patient.periodicDose.absorptionLumen.AUC,patient.periodicDose.variableDose.TotalCumulativeMass,patient.peripheral.C,patient.peripheral.AUC,ref_high.central.C,ref_high.central.AUC,ref_high.elim.MExc,ref_high.periodicDose.TotalCumulativeMass,ref_high.periodicDose.absorptionLumen.C,ref_high.periodicDose.absorptionLumen.AUC,ref_high.periodicDose.variableDose.TotalCumulativeMass,ref_high.peripheral.C,ref_high.peripheral.AUC,ref_low.central.C,ref_low.central.AUC,ref_low.elim.MExc,ref_low.periodicDose.TotalCumulativeMass,ref_low.periodicDose.absorptionLumen.C,ref_low.periodicDose.absorptionLumen.AUC,ref_low.periodicDose.variableDose.TotalCumulativeMass,ref_low.peripheral.C,ref_low.peripheral.AUC,ref.central.C,ref.central.AUC,ref.elim.MExc,ref.periodicDose.TotalCumulativeMass,ref.periodicDose.absorptionLumen.C,ref.periodicDose.absorptionLumen.AUC,ref.periodicDose.variableDose.TotalCumulativeMass,ref.peripheral.C,ref.peripheral.AUC) * Number of discrete variables: 120 ($whenCondition7,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,patient_high.central.Cmax,patient_high.central.Cmin,patient_high.central.rising,patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.rising,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.pulse.count,patient_high.peripheral.Cmax,patient_high.peripheral.Cmin,patient_high.peripheral.rising,patient_high.SLC22A2.status,patient_high.CYP2C19.status,$whenCondition14,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13,patient_low.central.Cmax,patient_low.central.Cmin,patient_low.central.rising,patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.rising,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.pulse.count,patient_low.peripheral.Cmax,patient_low.peripheral.Cmin,patient_low.peripheral.rising,patient_low.SLC22A2.status,patient_low.CYP2C19.status,$whenCondition21,$whenCondition15,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient.central.Cmax,patient.central.Cmin,patient.central.rising,patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.rising,patient.periodicDose.pulse.T_start,patient.periodicDose.pulse.count,patient.peripheral.Cmax,patient.peripheral.Cmin,patient.peripheral.rising,patient.SLC22A2.status,patient.CYP2C19.status,$whenCondition28,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,$whenCondition26,$whenCondition27,ref_high.central.Cmax,ref_high.central.Cmin,ref_high.central.rising,ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.rising,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.pulse.count,ref_high.peripheral.Cmax,ref_high.peripheral.Cmin,ref_high.peripheral.rising,ref_high.SLC22A2.status,ref_high.CYP2C19.status,$whenCondition35,$whenCondition29,$whenCondition30,$whenCondition31,$whenCondition32,$whenCondition33,$whenCondition34,ref_low.central.Cmax,ref_low.central.Cmin,ref_low.central.rising,ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.rising,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.pulse.count,ref_low.peripheral.Cmax,ref_low.peripheral.Cmin,ref_low.peripheral.rising,ref_low.SLC22A2.status,ref_low.CYP2C19.status,$whenCondition42,$whenCondition36,$whenCondition37,$whenCondition38,$whenCondition39,$whenCondition40,$whenCondition41,ref.central.Cmax,ref.central.Cmin,ref.central.rising,ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.rising,ref.periodicDose.pulse.T_start,ref.periodicDose.pulse.count,ref.peripheral.Cmax,ref.peripheral.Cmin,ref.peripheral.rising,ref.SLC22A2.status,ref.CYP2C19.status) * Number of discrete states: 108 (ref.periodicDose.pulse.count,ref.CYP2C19.status,ref.SLC22A2.status,ref.peripheral.Cmin,$whenCondition41,ref.peripheral.Cmax,$whenCondition40,ref.peripheral.rising,ref.periodicDose.absorptionLumen.Cmin,$whenCondition39,ref.periodicDose.absorptionLumen.Cmax,$whenCondition38,ref.periodicDose.absorptionLumen.rising,ref.central.Cmin,$whenCondition37,ref.central.Cmax,$whenCondition36,ref.central.rising,ref_low.periodicDose.pulse.count,ref_low.CYP2C19.status,ref_low.SLC22A2.status,ref_low.peripheral.Cmin,$whenCondition34,ref_low.peripheral.Cmax,$whenCondition33,ref_low.peripheral.rising,ref_low.periodicDose.absorptionLumen.Cmin,$whenCondition32,ref_low.periodicDose.absorptionLumen.Cmax,$whenCondition31,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.Cmin,$whenCondition30,ref_low.central.Cmax,$whenCondition29,ref_low.central.rising,ref_high.periodicDose.pulse.count,ref_high.CYP2C19.status,ref_high.SLC22A2.status,ref_high.peripheral.Cmin,$whenCondition27,ref_high.peripheral.Cmax,$whenCondition26,ref_high.peripheral.rising,ref_high.periodicDose.absorptionLumen.Cmin,$whenCondition25,ref_high.periodicDose.absorptionLumen.Cmax,$whenCondition24,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.Cmin,$whenCondition23,ref_high.central.Cmax,$whenCondition22,ref_high.central.rising,patient.periodicDose.pulse.count,patient.CYP2C19.status,patient.SLC22A2.status,patient.peripheral.Cmin,$whenCondition20,patient.peripheral.Cmax,$whenCondition19,patient.peripheral.rising,patient.periodicDose.absorptionLumen.Cmin,$whenCondition18,patient.periodicDose.absorptionLumen.Cmax,$whenCondition17,patient.periodicDose.absorptionLumen.rising,patient.central.Cmin,$whenCondition16,patient.central.Cmax,$whenCondition15,patient.central.rising,patient_low.periodicDose.pulse.count,patient_low.CYP2C19.status,patient_low.SLC22A2.status,patient_low.peripheral.Cmin,$whenCondition13,patient_low.peripheral.Cmax,$whenCondition12,patient_low.peripheral.rising,patient_low.periodicDose.absorptionLumen.Cmin,$whenCondition11,patient_low.periodicDose.absorptionLumen.Cmax,$whenCondition10,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.Cmin,$whenCondition9,patient_low.central.Cmax,$whenCondition8,patient_low.central.rising,patient_high.periodicDose.pulse.count,patient_high.CYP2C19.status,patient_high.SLC22A2.status,patient_high.peripheral.Cmin,$whenCondition6,patient_high.peripheral.Cmax,$whenCondition5,patient_high.peripheral.rising,patient_high.periodicDose.absorptionLumen.Cmin,$whenCondition4,patient_high.periodicDose.absorptionLumen.Cmax,$whenCondition3,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.Cmin,$whenCondition2,patient_high.central.Cmax,$whenCondition1,patient_high.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (252): * Single equations (assignments): 210 * Array equations: 0 * Algorithm blocks: 30 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0004939/0.7468, allocations: 422 kB / 1.114 GB, free: 2.922 MB / 0.7762 GB Notification: Performance of simCode: created initialization part: time 0.005745/0.7526, allocations: 7.944 MB / 1.122 GB, free: 10.13 MB / 0.7918 GB Notification: Performance of simCode: created event and clocks part: time 1.883e-06/0.7526, allocations: 4.062 kB / 1.122 GB, free: 10.12 MB / 0.7918 GB Notification: Performance of simCode: created simulation system equations: time 0.002676/0.7553, allocations: 4.613 MB / 1.127 GB, free: 4.961 MB / 0.7918 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002112/0.7574, allocations: 0.7835 MB / 1.127 GB, free: 4.195 MB / 0.7918 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.009148/0.7665, allocations: 9.848 MB / 1.137 GB, free: 10.12 MB / 0.8074 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0009306/0.7675, allocations: 1.268 MB / 1.138 GB, free: 8.812 MB / 0.8074 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003652/0.7678, allocations: 187.4 kB / 1.138 GB, free: 8.629 MB / 0.8074 GB Notification: Performance of SimCode: time 9.31e-07/0.7678, allocations: 0 / 1.138 GB, free: 8.629 MB / 0.8074 GB Notification: Performance of Templates: time 0.03726/0.8051, allocations: 40.22 MB / 1.178 GB, free: 0.7031 MB / 0.8387 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.makefile [Timeout 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.makefile clang++ -std=c++17 -fopenmp=libomp -Winvalid-pch -O2 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DOMC_BUILD -DUSE_THREAD -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.o OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:524:75: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_poor_' 524 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:524:166: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_rapid_' 524 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:524:208: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_ultra_' 524 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:528:75: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_poor_' 528 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:528:166: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_rapid_' 528 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:528:208: error: use of undeclared identifier 'patient_high_P_SLC22A2_P_g_P_ph_P_ultra_' 528 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_high_P_SLC22A2_P_g_P_ph_P_poor_, _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_high_P_SLC22A2_P_g_P_ph_P_rapid_, patient_high_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_high_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_high_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp3); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:553:120: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_'? 553 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:969:36: note: '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 969 | StatArrayDim1 _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:553:212: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_'? 553 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:964:36: note: '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_' declared here 964 | StatArrayDim1 _patient_high_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:557:120: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_'? 557 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:969:36: note: '_patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 969 | StatArrayDim1 _patient_high_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:557:212: error: use of undeclared identifier 'patient_high_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_'? 557 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_high_P_CYP2C19_P_g_P_ph_P_poor_, patient_high_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_high_P_CYP2C19_P_g_P_ph_P_rapid_, patient_high_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_high_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_high_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp7); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_high_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:964:36: note: '_patient_high_P_CYP2C19_P_g_P_ph_P_poor_' declared here 964 | StatArrayDim1 _patient_high_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1097:75: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_poor_' 1097 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1097:164: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_rapid_' 1097 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1097:205: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_ultra_' 1097 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp11); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1101:75: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_poor_' 1101 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1101:164: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_rapid_' 1101 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1101:205: error: use of undeclared identifier 'patient_low_P_SLC22A2_P_g_P_ph_P_ultra_' 1101 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_OCT2__Phenotype(patient_low_P_SLC22A2_P_g_P_ph_P_poor_, _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_, patient_low_P_SLC22A2_P_g_P_ph_P_rapid_, patient_low_P_SLC22A2_P_g_P_ph_P_ultra_, _patient_low_P_SLC22A2_P_g_P_ph_P_CLscale_, _patient_low_P_SLC22A2_P_g_P_ph_P_Fscale_,tmp13); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1126:119: error: use of undeclared identifier 'patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_'? 1126 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_low_P_CYP2C19_P_g_P_ph_P_poor_, patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_low_P_CYP2C19_P_g_P_ph_P_rapid_, patient_low_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_low_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_low_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp15); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:978:36: note: '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 978 | StatArrayDim1 _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1126:209: error: use of undeclared identifier 'patient_low_P_CYP2C19_P_g_P_ph_P_ultra_'; did you mean '_patient_low_P_CYP2C19_P_g_P_ph_P_poor_'? 1126 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_low_P_CYP2C19_P_g_P_ph_P_poor_, patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_low_P_CYP2C19_P_g_P_ph_P_rapid_, patient_low_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_low_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_low_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp15); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_low_P_CYP2C19_P_g_P_ph_P_poor_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:973:36: note: '_patient_low_P_CYP2C19_P_g_P_ph_P_poor_' declared here 973 | StatArrayDim1 _patient_low_P_CYP2C19_P_g_P_ph_P_poor_; | ^ In file included from OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.cpp:29: ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericInitialize.cpp:1130:119: error: use of undeclared identifier 'patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_'; did you mean '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_'? 1130 | _functions->Pharmacolibrary_Pharmacogenomics_Phenotypes_CYP2C19__Phenotype(_patient_low_P_CYP2C19_P_g_P_ph_P_poor_, patient_low_P_CYP2C19_P_g_P_ph_P_intermediate_, _patient_low_P_CYP2C19_P_g_P_ph_P_rapid_, patient_low_P_CYP2C19_P_g_P_ph_P_ultra_, _patient_low_P_CYP2C19_P_g_P_ph_P_CLscale_, _patient_low_P_CYP2C19_P_g_P_ph_P_Fscale_,tmp17); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_ ./OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.h:978:36: note: '_patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_' declared here 978 | StatArrayDim1 _patient_low_P_SLC22A2_P_g_P_ph_P_intermediate_; | ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [: OMCppPharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_genericCalcHelperMain.o] Error 1 [Calling os._exit(0), Time elapsed: 6.086006026016548]