Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001135/0.001135, allocations: 104.3 kB / 19.71 MB, free: 436 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001274/0.001274, allocations: 214.6 kB / 23 MB, free: 2.957 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.058/1.058, allocations: 230.6 MB / 256.8 MB, free: 9.629 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.682/1.682, allocations: 334.2 MB / 0.6323 GB, free: 7.898 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.001504/0.001504, allocations: 71.89 kB / 0.867 GB, free: 7.988 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1963/0.1978, allocations: 112.8 MB / 0.9772 GB, free: 6.898 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.005507/0.2033, allocations: 6.205 MB / 0.9832 GB, free: 0.6641 MB / 0.6824 GB Notification: Performance of NFInst.instExpressions: time 0.002378/0.2057, allocations: 1.283 MB / 0.9845 GB, free: 15.38 MB / 0.698 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003721/0.2061, allocations: 11.94 kB / 0.9845 GB, free: 15.37 MB / 0.698 GB Notification: Performance of NFTyping.typeComponents: time 0.0002538/0.2064, allocations: 110.8 kB / 0.9846 GB, free: 15.26 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.0005433/0.2069, allocations: 329.3 kB / 0.9849 GB, free: 14.93 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.0005799/0.2075, allocations: 279.7 kB / 0.9852 GB, free: 14.66 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.001032/0.2085, allocations: 1.182 MB / 0.9864 GB, free: 13.47 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002937/0.2088, allocations: 167.9 kB / 0.9865 GB, free: 13.29 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0004473/0.2092, allocations: 418.6 kB / 0.9869 GB, free: 12.88 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0005275/0.2098, allocations: 406 kB / 0.9873 GB, free: 12.48 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 0.0001185/0.2099, allocations: 112 kB / 0.9874 GB, free: 12.38 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001273/0.21, allocations: 108 kB / 0.9875 GB, free: 12.27 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 0.0001144/0.2101, allocations: 195.3 kB / 0.9877 GB, free: 12.08 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.0003165/0.2105, allocations: 422.2 kB / 0.9881 GB, free: 11.66 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.4177/0.6282, allocations: 1.152 MB / 0.9892 GB, free: 20.82 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 5.961e-06/0.6282, allocations: 0 / 0.9892 GB, free: 20.82 MB / 0.698 GB Notification: Performance of FrontEnd: time 2.044e-06/0.6282, allocations: 0 / 0.9892 GB, free: 20.82 MB / 0.698 GB Notification: Performance of Transformations before backend: time 2.591e-05/0.6282, allocations: 0 / 0.9892 GB, free: 20.82 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.00136/0.6296, allocations: 1.331 MB / 0.9905 GB, free: 19.96 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 4.306e-05/0.6296, allocations: 13.58 kB / 0.9905 GB, free: 19.96 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001038/0.6297, allocations: 93.42 kB / 0.9906 GB, free: 19.91 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004225/0.6301, allocations: 463.5 kB / 0.9911 GB, free: 19.69 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.775e-05/0.6302, allocations: 44.5 kB / 0.9911 GB, free: 19.69 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 7.995e-05/0.6302, allocations: 76.44 kB / 0.9912 GB, free: 19.69 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0008186/0.6311, allocations: 0.8464 MB / 0.992 GB, free: 19.4 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.714e-05/0.6311, allocations: 10.72 kB / 0.992 GB, free: 19.4 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.9e-05/0.6311, allocations: 25.17 kB / 0.992 GB, free: 19.4 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.082e-05/0.6311, allocations: 12.75 kB / 0.9921 GB, free: 19.4 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008011/0.6319, allocations: 0.7432 MB / 0.9928 GB, free: 19.21 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0015/0.6334, allocations: 1.752 MB / 0.9945 GB, free: 18.51 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0009603/0.6344, allocations: 0.81 MB / 0.9953 GB, free: 18.25 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0004344/0.6348, allocations: 482.3 kB / 0.9957 GB, free: 18.04 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 3.611e-05/0.6349, allocations: 10.09 kB / 0.9958 GB, free: 18.04 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0007868/0.6357, allocations: 1.107 MB / 0.9968 GB, free: 17.39 MB / 0.698 GB Notification: Performance of pre-optimization done (n=99): time 2.284e-06/0.6357, allocations: 1.594 kB / 0.9968 GB, free: 17.39 MB / 0.698 GB Notification: Performance of matching and sorting (n=105): time 0.003269/0.6389, allocations: 3.543 MB / 1 GB, free: 15.71 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001017/0.639, allocations: 0.5998 MB / 1.001 GB, free: 15.03 MB / 0.698 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004616/0.6395, allocations: 0.5339 MB / 1.001 GB, free: 14.9 MB / 0.698 GB Notification: Performance of collectPreVariables (initialization): time 5.053e-05/0.6395, allocations: 62.3 kB / 1.001 GB, free: 14.87 MB / 0.698 GB Notification: Performance of collectInitialEqns (initialization): time 0.000139/0.6397, allocations: 299.9 kB / 1.002 GB, free: 14.72 MB / 0.698 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001578/0.6398, allocations: 350.6 kB / 1.002 GB, free: 14.51 MB / 0.698 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001889/0.64, allocations: 191 kB / 1.002 GB, free: 14.49 MB / 0.698 GB Notification: Performance of setup shared object (initialization): time 9.355e-05/0.6401, allocations: 397.4 kB / 1.003 GB, free: 14.18 MB / 0.698 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005546/0.6407, allocations: 0.6373 MB / 1.003 GB, free: 13.88 MB / 0.698 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006576/0.6413, allocations: 0.964 MB / 1.004 GB, free: 13.18 MB / 0.698 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002382/0.6437, allocations: 2.488 MB / 1.007 GB, free: 11.46 MB / 0.698 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.482e-06/0.6437, allocations: 2.594 kB / 1.007 GB, free: 11.46 MB / 0.698 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.00189/0.6456, allocations: 1.742 MB / 1.008 GB, free: 10.41 MB / 0.698 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001236/0.6457, allocations: 269.4 kB / 1.009 GB, free: 10.11 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.424e-05/0.6458, allocations: 7.812 kB / 1.009 GB, free: 10.11 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.901e-05/0.6458, allocations: 15.16 kB / 1.009 GB, free: 10.11 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005483/0.6463, allocations: 243.3 kB / 1.009 GB, free: 10.1 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.265e-05/0.6464, allocations: 19.28 kB / 1.009 GB, free: 10.1 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000343/0.6467, allocations: 66.53 kB / 1.009 GB, free: 10.08 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.978e-05/0.6468, allocations: 46.67 kB / 1.009 GB, free: 10.07 MB / 0.698 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0005752/0.6473, allocations: 0.5837 MB / 1.01 GB, free: 9.625 MB / 0.698 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001187/0.6475, allocations: 91.84 kB / 1.01 GB, free: 9.578 MB / 0.698 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001094/0.6476, allocations: 84.69 kB / 1.01 GB, free: 9.516 MB / 0.698 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.182e-05/0.6476, allocations: 14.34 kB / 1.01 GB, free: 9.512 MB / 0.698 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.121e-05/0.6476, allocations: 0.75 kB / 1.01 GB, free: 9.512 MB / 0.698 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.212e-05/0.6476, allocations: 5.281 kB / 1.01 GB, free: 9.512 MB / 0.698 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002497/0.6501, allocations: 2.307 MB / 1.012 GB, free: 8.121 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.206e-06/0.6501, allocations: 0 / 1.012 GB, free: 8.121 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0004716/0.6506, allocations: 178 kB / 1.012 GB, free: 8.109 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (simulation): time 6.603e-06/0.6506, allocations: 4.672 kB / 1.012 GB, free: 8.109 MB / 0.698 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.501e-05/0.6506, allocations: 35.8 kB / 1.012 GB, free: 8.094 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.57e-06/0.6506, allocations: 8.891 kB / 1.012 GB, free: 8.09 MB / 0.698 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.934e-06/0.6506, allocations: 1.312 kB / 1.012 GB, free: 8.09 MB / 0.698 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002467/0.6531, allocations: 2.246 MB / 1.014 GB, free: 6.66 MB / 0.698 GB Notification: Performance of postOpt removeConstants (simulation): time 0.000281/0.6534, allocations: 172.2 kB / 1.015 GB, free: 6.555 MB / 0.698 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001179/0.6535, allocations: 42.17 kB / 1.015 GB, free: 6.535 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003035/0.6538, allocations: 50.55 kB / 1.015 GB, free: 6.523 MB / 0.698 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001971/0.654, allocations: 100.3 kB / 1.015 GB, free: 6.496 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.891e-05/0.6541, allocations: 41.28 kB / 1.015 GB, free: 6.484 MB / 0.698 GB Notification: Performance of sorting global known variables: time 0.0004195/0.6545, allocations: 367.8 kB / 1.015 GB, free: 6.312 MB / 0.698 GB Notification: Performance of sort global known variables: time 1.71e-07/0.6545, allocations: 0 / 1.015 GB, free: 6.312 MB / 0.698 GB Notification: Performance of remove unused functions: time 0.0006201/0.6551, allocations: 246.5 kB / 1.015 GB, free: 6.285 MB / 0.698 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001956/0.6553, allocations: 195.8 kB / 1.016 GB, free: 6.156 MB / 0.698 GB Notification: Performance of simCode: created initialization part: time 0.001839/0.6571, allocations: 1.833 MB / 1.017 GB, free: 4.797 MB / 0.698 GB Notification: Performance of simCode: created event and clocks part: time 1.683e-06/0.6571, allocations: 4.312 kB / 1.017 GB, free: 4.793 MB / 0.698 GB Notification: Performance of simCode: created simulation system equations: time 0.000881/0.658, allocations: 0.9473 MB / 1.018 GB, free: 4.07 MB / 0.698 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008912/0.6589, allocations: 265.2 kB / 1.019 GB, free: 3.98 MB / 0.698 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003356/0.6623, allocations: 2.81 MB / 1.021 GB, free: 2.035 MB / 0.698 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004217/0.6627, allocations: 370 kB / 1.022 GB, free: 1.918 MB / 0.698 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002086/0.6629, allocations: 70.39 kB / 1.022 GB, free: 1.906 MB / 0.698 GB Notification: Performance of SimCode: time 1.282e-06/0.6629, allocations: 2.516 kB / 1.022 GB, free: 1.906 MB / 0.698 GB Notification: Performance of Templates: time 0.01698/0.6799, allocations: 12.28 MB / 1.034 GB, free: 14.04 MB / 0.7137 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 8.006840724032372]