Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001003/0.001003, allocations: 100.4 kB / 19.7 MB, free: 440 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00121/0.00121, allocations: 215.3 kB / 23 MB, free: 2.945 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.06/1.06, allocations: 230.6 MB / 256.8 MB, free: 9.582 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.818/1.818, allocations: 334.3 MB / 0.6323 GB, free: 7.914 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.00155/0.00155, allocations: 63.89 kB / 0.867 GB, free: 8.094 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.2029/0.2044, allocations: 112.8 MB / 0.9772 GB, free: 7.012 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.00827/0.2127, allocations: 9.849 MB / 0.9868 GB, free: 13.12 MB / 0.698 GB Notification: Performance of NFInst.instExpressions: time 0.3997/0.6124, allocations: 2.232 MB / 0.989 GB, free: 18.8 MB / 0.698 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.001115/0.6135, allocations: 19.59 kB / 0.989 GB, free: 18.8 MB / 0.698 GB Notification: Performance of NFTyping.typeComponents: time 0.0004222/0.6139, allocations: 226.5 kB / 0.9892 GB, free: 18.8 MB / 0.698 GB Notification: Performance of NFTyping.typeBindings: time 0.0009419/0.6149, allocations: 0.6635 MB / 0.9899 GB, free: 18.8 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.0008896/0.6158, allocations: 0.6128 MB / 0.9905 GB, free: 18.8 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.001677/0.6174, allocations: 2.596 MB / 0.993 GB, free: 18.34 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005052/0.6179, allocations: 359.2 kB / 0.9933 GB, free: 18.25 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001413/0.6194, allocations: 0.8783 MB / 0.9942 GB, free: 18.12 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.001511/0.6209, allocations: 0.831 MB / 0.995 GB, free: 17.92 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 0.0003561/0.6212, allocations: 278.6 kB / 0.9953 GB, free: 17.92 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003379/0.6216, allocations: 282.1 kB / 0.9955 GB, free: 17.92 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 0.0001935/0.6218, allocations: 438.8 kB / 0.996 GB, free: 17.85 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.0006967/0.6224, allocations: 0.8797 MB / 0.9968 GB, free: 17.65 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.002511/0.625, allocations: 2.825 MB / 0.9996 GB, free: 17.09 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 4.628e-06/0.625, allocations: 1.312 kB / 0.9996 GB, free: 17.09 MB / 0.698 GB Notification: Performance of FrontEnd: time 2.555e-06/0.625, allocations: 1.531 kB / 0.9996 GB, free: 17.09 MB / 0.698 GB Notification: Performance of Transformations before backend: time 6.179e-05/0.625, allocations: 0 / 0.9996 GB, free: 17.09 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.003593/0.6286, allocations: 2.498 MB / 1.002 GB, free: 15.27 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 4.324e-05/0.6287, allocations: 11.83 kB / 1.002 GB, free: 15.27 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003078/0.629, allocations: 186.6 kB / 1.002 GB, free: 15.17 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001118/0.6301, allocations: 0.869 MB / 1.003 GB, free: 14.55 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.142e-05/0.6302, allocations: 95.25 kB / 1.003 GB, free: 14.5 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002295/0.6304, allocations: 147.7 kB / 1.003 GB, free: 14.45 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.002417/0.6328, allocations: 1.765 MB / 1.005 GB, free: 13.39 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 6.8e-05/0.6329, allocations: 21.31 kB / 1.005 GB, free: 13.38 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.998e-05/0.633, allocations: 48.27 kB / 1.005 GB, free: 13.34 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.332e-05/0.633, allocations: 27.06 kB / 1.005 GB, free: 13.34 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002203/0.6352, allocations: 1.588 MB / 1.007 GB, free: 12.52 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004924/0.6401, allocations: 3.909 MB / 1.01 GB, free: 9.898 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.002343/0.6425, allocations: 1.727 MB / 1.012 GB, free: 8.887 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.001214/0.6437, allocations: 1.011 MB / 1.013 GB, free: 8.188 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 6.888e-05/0.6437, allocations: 22.19 kB / 1.013 GB, free: 8.184 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.002248/0.646, allocations: 2.267 MB / 1.015 GB, free: 6.531 MB / 0.698 GB Notification: Performance of pre-optimization done (n=198): time 5.911e-06/0.646, allocations: 0.5 kB / 1.015 GB, free: 6.531 MB / 0.698 GB Notification: Performance of matching and sorting (n=210): time 0.01065/0.6566, allocations: 7.86 MB / 1.023 GB, free: 1.195 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0003905/0.657, allocations: 1.174 MB / 1.024 GB, free: 15.82 MB / 0.7137 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001404/0.6584, allocations: 1.03 MB / 1.025 GB, free: 15.36 MB / 0.7137 GB Notification: Performance of collectPreVariables (initialization): time 0.0002231/0.6587, allocations: 102 kB / 1.025 GB, free: 15.28 MB / 0.7137 GB Notification: Performance of collectInitialEqns (initialization): time 0.0004269/0.6591, allocations: 0.533 MB / 1.026 GB, free: 14.86 MB / 0.7137 GB Notification: Performance of collectInitialBindings (initialization): time 0.0005352/0.6596, allocations: 0.6829 MB / 1.027 GB, free: 14.33 MB / 0.7137 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004838/0.6601, allocations: 364.6 kB / 1.027 GB, free: 14.17 MB / 0.7137 GB Notification: Performance of setup shared object (initialization): time 6.964e-05/0.6602, allocations: 303.2 kB / 1.027 GB, free: 13.88 MB / 0.7137 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001445/0.6616, allocations: 1.346 MB / 1.028 GB, free: 12.93 MB / 0.7137 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.002006/0.6636, allocations: 2.003 MB / 1.03 GB, free: 11.14 MB / 0.7137 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.00552/0.6692, allocations: 5.241 MB / 1.036 GB, free: 7.102 MB / 0.7137 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.728e-05/0.6692, allocations: 4.844 kB / 1.036 GB, free: 7.102 MB / 0.7137 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.004467/0.6736, allocations: 3.637 MB / 1.039 GB, free: 4.816 MB / 0.7137 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001929/0.6738, allocations: 0.5135 MB / 1.04 GB, free: 4.234 MB / 0.7137 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.472e-05/0.6739, allocations: 15.5 kB / 1.04 GB, free: 4.234 MB / 0.7137 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.625e-05/0.6739, allocations: 28.91 kB / 1.04 GB, free: 4.234 MB / 0.7137 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0009916/0.6749, allocations: 485.2 kB / 1.04 GB, free: 4.176 MB / 0.7137 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.21e-05/0.6749, allocations: 41.03 kB / 1.04 GB, free: 4.164 MB / 0.7137 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001273/0.6762, allocations: 130.5 kB / 1.04 GB, free: 4.125 MB / 0.7137 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001246/0.6763, allocations: 98.7 kB / 1.04 GB, free: 4.105 MB / 0.7137 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001429/0.6778, allocations: 1.131 MB / 1.041 GB, free: 3.234 MB / 0.7137 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003315/0.6781, allocations: 174.4 kB / 1.042 GB, free: 3.148 MB / 0.7137 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001931/0.6783, allocations: 159.2 kB / 1.042 GB, free: 3.039 MB / 0.7137 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.473e-05/0.6783, allocations: 18.31 kB / 1.042 GB, free: 3.039 MB / 0.7137 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 3.092e-05/0.6783, allocations: 1.5 kB / 1.042 GB, free: 3.039 MB / 0.7137 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.158e-05/0.6783, allocations: 9.562 kB / 1.042 GB, free: 3.039 MB / 0.7137 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00544/0.6838, allocations: 4.974 MB / 1.047 GB, free: 15.89 MB / 0.7293 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.312e-06/0.6838, allocations: 9.281 kB / 1.047 GB, free: 15.88 MB / 0.7293 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008907/0.6847, allocations: 333.1 kB / 1.047 GB, free: 15.8 MB / 0.7293 GB Notification: Performance of postOpt tearingSystem (simulation): time 1.059e-05/0.6847, allocations: 7.062 kB / 1.047 GB, free: 15.8 MB / 0.7293 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001291/0.6848, allocations: 84.39 kB / 1.047 GB, free: 15.75 MB / 0.7293 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.086e-06/0.6848, allocations: 6.938 kB / 1.047 GB, free: 15.75 MB / 0.7293 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.607e-06/0.6848, allocations: 9.406 kB / 1.047 GB, free: 15.75 MB / 0.7293 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004699/0.6895, allocations: 4.671 MB / 1.052 GB, free: 12.47 MB / 0.7293 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0008972/0.6904, allocations: 387.2 kB / 1.052 GB, free: 12.16 MB / 0.7293 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002877/0.6907, allocations: 102.1 kB / 1.052 GB, free: 12.11 MB / 0.7293 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0006253/0.6913, allocations: 102.1 kB / 1.052 GB, free: 12.06 MB / 0.7293 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003126/0.6917, allocations: 217.9 kB / 1.052 GB, free: 11.91 MB / 0.7293 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.342e-05/0.6917, allocations: 71.78 kB / 1.052 GB, free: 11.89 MB / 0.7293 GB Notification: Performance of sorting global known variables: time 0.0007642/0.6925, allocations: 0.6839 MB / 1.053 GB, free: 11.49 MB / 0.7293 GB Notification: Performance of sort global known variables: time 2e-07/0.6925, allocations: 0 / 1.053 GB, free: 11.49 MB / 0.7293 GB Notification: Performance of remove unused functions: time 0.001372/0.6939, allocations: 489.8 kB / 1.054 GB, free: 11.44 MB / 0.7293 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002913/0.6942, allocations: 318.6 kB / 1.054 GB, free: 11.21 MB / 0.7293 GB Notification: Performance of simCode: created initialization part: time 0.003745/0.6979, allocations: 3.824 MB / 1.058 GB, free: 8.094 MB / 0.7293 GB Notification: Performance of simCode: created event and clocks part: time 5.3e-06/0.6979, allocations: 3.094 kB / 1.058 GB, free: 8.094 MB / 0.7293 GB Notification: Performance of simCode: created simulation system equations: time 0.001851/0.6998, allocations: 2.042 MB / 1.06 GB, free: 6.387 MB / 0.7293 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.002146/0.7019, allocations: 0.5396 MB / 1.06 GB, free: 6.133 MB / 0.7293 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006933/0.7089, allocations: 5.602 MB / 1.066 GB, free: 1.973 MB / 0.7293 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0006647/0.7095, allocations: 0.6626 MB / 1.066 GB, free: 1.625 MB / 0.7293 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005885/0.7101, allocations: 136.8 kB / 1.066 GB, free: 1.602 MB / 0.7293 GB Notification: Performance of SimCode: time 1.382e-06/0.7101, allocations: 0 / 1.066 GB, free: 1.602 MB / 0.7293 GB Notification: Performance of Templates: time 0.03191/0.742, allocations: 26.34 MB / 1.092 GB, free: 11.27 MB / 0.7605 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 9.096981651848182]