Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009986/0.0009986, allocations: 100.3 kB / 19.7 MB, free: 444 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001217/0.001217, allocations: 209.8 kB / 23 MB, free: 2.988 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.093/1.093, allocations: 230.6 MB / 256.8 MB, free: 9.602 MB / 202.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.665/1.665, allocations: 334.2 MB / 0.6323 GB, free: 7.98 MB / 442.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine")
translateModel(Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine") [Timeout 660]
"Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.004959/0.004959, allocations: 79.81 kB / 0.867 GB, free: 8.016 MB / 0.573 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.2213/0.2263, allocations: 112.8 MB / 0.9772 GB, free: 6.938 MB / 0.6824 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine): time 0.005126/0.2314, allocations: 6.222 MB / 0.9833 GB, free: 0.6836 MB / 0.6824 GB
Notification: Performance of NFInst.instExpressions: time 0.0014/0.2328, allocations: 1.287 MB / 0.9845 GB, free: 15.39 MB / 0.698 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001839/0.233, allocations: 7.938 kB / 0.9846 GB, free: 15.39 MB / 0.698 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002077/0.2332, allocations: 114.8 kB / 0.9847 GB, free: 15.27 MB / 0.698 GB
Notification: Performance of NFTyping.typeBindings: time 0.0003801/0.2336, allocations: 325.3 kB / 0.985 GB, free: 14.95 MB / 0.698 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0004154/0.234, allocations: 283.6 kB / 0.9852 GB, free: 14.68 MB / 0.698 GB
Notification: Performance of NFFlatten.flatten: time 0.0007114/0.2347, allocations: 1.179 MB / 0.9864 GB, free: 13.49 MB / 0.698 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002543/0.235, allocations: 175.9 kB / 0.9866 GB, free: 13.3 MB / 0.698 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002753/0.2352, allocations: 414.6 kB / 0.987 GB, free: 12.9 MB / 0.698 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003974/0.2356, allocations: 418 kB / 0.9874 GB, free: 12.49 MB / 0.698 GB
Notification: Performance of NFPackage.collectConstants: time 8.971e-05/0.2357, allocations: 108 kB / 0.9875 GB, free: 12.38 MB / 0.698 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0001018/0.2358, allocations: 112 kB / 0.9876 GB, free: 12.27 MB / 0.698 GB
Notification: Performance of NFScalarize.scalarize: time 9.632e-05/0.2359, allocations: 195.4 kB / 0.9877 GB, free: 12.08 MB / 0.698 GB
Notification: Performance of NFVerifyModel.verify: time 0.0002617/0.2362, allocations: 418.2 kB / 0.9881 GB, free: 11.67 MB / 0.698 GB
Notification: Performance of NFConvertDAE.convert: time 0.4374/0.6736, allocations: 1.158 MB / 0.9893 GB, free: 20.84 MB / 0.698 GB
Notification: Performance of FrontEnd - DAE generated: time 5.601e-06/0.6736, allocations: 2.625 kB / 0.9893 GB, free: 20.84 MB / 0.698 GB
Notification: Performance of FrontEnd: time 1.643e-06/0.6736, allocations: 1.812 kB / 0.9893 GB, free: 20.84 MB / 0.698 GB
Notification: Performance of Transformations before backend: time 3.004e-05/0.6736, allocations: 0.5312 kB / 0.9893 GB, free: 20.84 MB / 0.698 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 146
 * Number of variables: 146
Notification: Performance of Generate backend data structure: time 0.001613/0.6752, allocations: 1.339 MB / 0.9906 GB, free: 19.98 MB / 0.698 GB
Notification: Performance of prepare preOptimizeDAE: time 4.678e-05/0.6753, allocations: 12.23 kB / 0.9906 GB, free: 19.98 MB / 0.698 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001171/0.6754, allocations: 93.72 kB / 0.9907 GB, free: 19.93 MB / 0.698 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004713/0.6758, allocations: 453 kB / 0.9911 GB, free: 19.71 MB / 0.698 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.241e-05/0.6759, allocations: 46.16 kB / 0.9912 GB, free: 19.71 MB / 0.698 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 8.818e-05/0.676, allocations: 74.27 kB / 0.9912 GB, free: 19.71 MB / 0.698 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0009088/0.6769, allocations: 0.8632 MB / 0.9921 GB, free: 19.4 MB / 0.698 GB
Notification: Performance of preOpt findStateOrder (simulation): time 3.324e-05/0.6769, allocations: 13.48 kB / 0.9921 GB, free: 19.4 MB / 0.698 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.3e-05/0.677, allocations: 26.23 kB / 0.9921 GB, free: 19.4 MB / 0.698 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.13e-05/0.677, allocations: 18.59 kB / 0.9921 GB, free: 19.4 MB / 0.698 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008743/0.6778, allocations: 0.7435 MB / 0.9929 GB, free: 19.21 MB / 0.698 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001731/0.6796, allocations: 1.921 MB / 0.9947 GB, free: 18.34 MB / 0.698 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.001048/0.6806, allocations: 0.8485 MB / 0.9956 GB, free: 18.03 MB / 0.698 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0004643/0.6811, allocations: 493.8 kB / 0.996 GB, free: 17.8 MB / 0.698 GB
Notification: Performance of preOpt evalFunc (simulation): time 3.699e-05/0.6811, allocations: 19.31 kB / 0.9961 GB, free: 17.8 MB / 0.698 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0008205/0.6819, allocations: 1.123 MB / 0.9972 GB, free: 17.13 MB / 0.698 GB
Notification: Performance of pre-optimization done (n=101): time 2.084e-06/0.6819, allocations: 0 / 0.9972 GB, free: 17.13 MB / 0.698 GB
Notification: Performance of matching and sorting (n=107): time 0.003657/0.6856, allocations: 3.744 MB / 1.001 GB, free: 15.32 MB / 0.698 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001113/0.6857, allocations: 0.6439 MB / 1.001 GB, free: 14.57 MB / 0.698 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004898/0.6862, allocations: 0.5282 MB / 1.002 GB, free: 14.45 MB / 0.698 GB
Notification: Performance of collectPreVariables (initialization): time 5.517e-05/0.6863, allocations: 59.39 kB / 1.002 GB, free: 14.41 MB / 0.698 GB
Notification: Performance of collectInitialEqns (initialization): time 0.000146/0.6864, allocations: 306.1 kB / 1.002 GB, free: 14.27 MB / 0.698 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0001706/0.6866, allocations: 364 kB / 1.003 GB, free: 14.04 MB / 0.698 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001916/0.6868, allocations: 187.8 kB / 1.003 GB, free: 14.03 MB / 0.698 GB
Notification: Performance of setup shared object (initialization): time 9.948e-05/0.6869, allocations: 396.1 kB / 1.003 GB, free: 13.71 MB / 0.698 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0005937/0.6875, allocations: 0.6389 MB / 1.004 GB, free: 13.41 MB / 0.698 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006945/0.6882, allocations: 0.9795 MB / 1.005 GB, free: 12.7 MB / 0.698 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.002714/0.6909, allocations: 2.503 MB / 1.007 GB, free: 10.97 MB / 0.698 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.628e-06/0.6909, allocations: 2.938 kB / 1.007 GB, free: 10.97 MB / 0.698 GB
Notification: Performance of matching and sorting (n=161) (initialization): time 0.002145/0.693, allocations: 1.753 MB / 1.009 GB, free: 9.914 MB / 0.698 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0002173/0.6932, allocations: 268.8 kB / 1.009 GB, free: 9.621 MB / 0.698 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.651e-05/0.6933, allocations: 9.047 kB / 1.009 GB, free: 9.621 MB / 0.698 GB
Notification: Performance of postOpt tearingSystem (initialization): time 3.458e-05/0.6933, allocations: 14.75 kB / 1.009 GB, free: 9.621 MB / 0.698 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005819/0.6939, allocations: 244.2 kB / 1.009 GB, free: 9.609 MB / 0.698 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.448e-05/0.6939, allocations: 20.36 kB / 1.009 GB, free: 9.609 MB / 0.698 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003983/0.6943, allocations: 69.94 kB / 1.01 GB, free: 9.586 MB / 0.698 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.784e-05/0.6944, allocations: 49.09 kB / 1.01 GB, free: 9.578 MB / 0.698 GB
Warning: Assuming fixed start value for the following 30 variables:
         green_tee_drinker.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         green_tee_drinker.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         green_tee_drinker.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         green_tee_drinker.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         black_tea_drinker.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         black_tea_drinker.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         black_tea_drinker.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         black_tea_drinker.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         coffee_drinker.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         coffee_drinker.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         coffee_drinker.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         coffee_drinker.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         coffee_drinker.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         coffee_drinker.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         coffee_drinker.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         coffee_drinker.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         black_tea_drinker.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         black_tea_drinker.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         black_tea_drinker.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         black_tea_drinker.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         green_tee_drinker.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         green_tee_drinker.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         green_tee_drinker.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         green_tee_drinker.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         coffee_drinker.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         coffee_drinker.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         black_tea_drinker.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         black_tea_drinker.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         green_tee_drinker.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         green_tee_drinker.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 38
 * Number of states: 0 ()
 * Number of discrete variables: 63 ($PRE.coffee_drinker.central.Cmin,coffee_drinker.central.Cmin,$PRE.coffee_drinker.central.Cmax,coffee_drinker.central.Cmax,$PRE.coffee_drinker.periodicDose.absorptionLumen.Cmin,coffee_drinker.periodicDose.absorptionLumen.Cmin,$PRE.coffee_drinker.periodicDose.absorptionLumen.Cmax,coffee_drinker.periodicDose.absorptionLumen.Cmax,$PRE.black_tea_drinker.central.Cmin,black_tea_drinker.central.Cmin,$PRE.black_tea_drinker.central.Cmax,black_tea_drinker.central.Cmax,$PRE.black_tea_drinker.periodicDose.absorptionLumen.Cmin,black_tea_drinker.periodicDose.absorptionLumen.Cmin,$PRE.black_tea_drinker.periodicDose.absorptionLumen.Cmax,black_tea_drinker.periodicDose.absorptionLumen.Cmax,$PRE.green_tee_drinker.central.Cmin,green_tee_drinker.central.Cmin,$PRE.green_tee_drinker.central.Cmax,green_tee_drinker.central.Cmax,$PRE.green_tee_drinker.periodicDose.absorptionLumen.Cmin,green_tee_drinker.periodicDose.absorptionLumen.Cmin,$PRE.green_tee_drinker.periodicDose.absorptionLumen.Cmax,green_tee_drinker.periodicDose.absorptionLumen.Cmax,$PRE.coffee_drinker.periodicDose.pulse.count,$PRE.coffee_drinker.periodicDose.pulse.T_start,$PRE.coffee_drinker.periodicDose.absorptionLumen.rising,$PRE.coffee_drinker.central.rising,coffee_drinker.periodicDose.pulse.count,coffee_drinker.periodicDose.pulse.T_start,coffee_drinker.periodicDose.absorptionLumen.rising,coffee_drinker.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.black_tea_drinker.periodicDose.pulse.count,$PRE.black_tea_drinker.periodicDose.pulse.T_start,$PRE.black_tea_drinker.periodicDose.absorptionLumen.rising,$PRE.black_tea_drinker.central.rising,black_tea_drinker.periodicDose.pulse.count,black_tea_drinker.periodicDose.pulse.T_start,black_tea_drinker.periodicDose.absorptionLumen.rising,black_tea_drinker.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.green_tee_drinker.periodicDose.pulse.count,$PRE.green_tee_drinker.periodicDose.pulse.T_start,$PRE.green_tee_drinker.periodicDose.absorptionLumen.rising,$PRE.green_tee_drinker.central.rising,green_tee_drinker.periodicDose.pulse.count,green_tee_drinker.periodicDose.pulse.T_start,green_tee_drinker.periodicDose.absorptionLumen.rising,green_tee_drinker.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (152):
 * Single equations (assignments): 143
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0006407/0.695, allocations: 0.5833 MB / 1.01 GB, free: 9.125 MB / 0.698 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001218/0.6952, allocations: 93.78 kB / 1.01 GB, free: 9.078 MB / 0.698 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001063/0.6953, allocations: 85.83 kB / 1.01 GB, free: 9.02 MB / 0.698 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.432e-05/0.6953, allocations: 11.53 kB / 1.01 GB, free: 9.02 MB / 0.698 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.73e-05/0.6953, allocations: 1.812 kB / 1.01 GB, free: 9.02 MB / 0.698 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.292e-05/0.6953, allocations: 10.44 kB / 1.01 GB, free: 9.016 MB / 0.698 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002673/0.698, allocations: 2.319 MB / 1.013 GB, free: 7.621 MB / 0.698 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.23e-06/0.698, allocations: 5.578 kB / 1.013 GB, free: 7.621 MB / 0.698 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005057/0.6985, allocations: 177.6 kB / 1.013 GB, free: 7.609 MB / 0.698 GB
Notification: Performance of postOpt tearingSystem (simulation): time 7.905e-06/0.6985, allocations: 4.188 kB / 1.013 GB, free: 7.609 MB / 0.698 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.806e-05/0.6986, allocations: 37.59 kB / 1.013 GB, free: 7.594 MB / 0.698 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.055e-06/0.6986, allocations: 4.344 kB / 1.013 GB, free: 7.594 MB / 0.698 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 5.019e-06/0.6986, allocations: 4.562 kB / 1.013 GB, free: 7.594 MB / 0.698 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002802/0.7014, allocations: 2.27 MB / 1.015 GB, free: 6.137 MB / 0.698 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0003002/0.7017, allocations: 173.8 kB / 1.015 GB, free: 6.031 MB / 0.698 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001275/0.7018, allocations: 41.88 kB / 1.015 GB, free: 6.012 MB / 0.698 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003212/0.7021, allocations: 51.47 kB / 1.015 GB, free: 6 MB / 0.698 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002112/0.7023, allocations: 106.1 kB / 1.015 GB, free: 5.973 MB / 0.698 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.218e-05/0.7024, allocations: 37.91 kB / 1.015 GB, free: 5.965 MB / 0.698 GB
Notification: Performance of sorting global known variables: time 0.0004457/0.7028, allocations: 370.9 kB / 1.016 GB, free: 5.785 MB / 0.698 GB
Notification: Performance of sort global known variables: time 1.9e-07/0.7028, allocations: 0 / 1.016 GB, free: 5.785 MB / 0.698 GB
Notification: Performance of remove unused functions: time 0.0006916/0.7035, allocations: 246.7 kB / 1.016 GB, free: 5.758 MB / 0.698 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 21 (green_tee_drinker.central.C,green_tee_drinker.central.AUC,green_tee_drinker.elim.MExc,green_tee_drinker.periodicDose.TotalCumulativeMass,green_tee_drinker.periodicDose.absorptionLumen.C,green_tee_drinker.periodicDose.absorptionLumen.AUC,green_tee_drinker.periodicDose.variableDose.TotalCumulativeMass,black_tea_drinker.central.C,black_tea_drinker.central.AUC,black_tea_drinker.elim.MExc,black_tea_drinker.periodicDose.TotalCumulativeMass,black_tea_drinker.periodicDose.absorptionLumen.C,black_tea_drinker.periodicDose.absorptionLumen.AUC,black_tea_drinker.periodicDose.variableDose.TotalCumulativeMass,coffee_drinker.central.C,coffee_drinker.central.AUC,coffee_drinker.elim.MExc,coffee_drinker.periodicDose.TotalCumulativeMass,coffee_drinker.periodicDose.absorptionLumen.C,coffee_drinker.periodicDose.absorptionLumen.AUC,coffee_drinker.periodicDose.variableDose.TotalCumulativeMass)
 * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,green_tee_drinker.central.Cmax,green_tee_drinker.central.Cmin,green_tee_drinker.central.rising,green_tee_drinker.periodicDose.absorptionLumen.Cmax,green_tee_drinker.periodicDose.absorptionLumen.Cmin,green_tee_drinker.periodicDose.absorptionLumen.rising,green_tee_drinker.periodicDose.pulse.T_start,green_tee_drinker.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,black_tea_drinker.central.Cmax,black_tea_drinker.central.Cmin,black_tea_drinker.central.rising,black_tea_drinker.periodicDose.absorptionLumen.Cmax,black_tea_drinker.periodicDose.absorptionLumen.Cmin,black_tea_drinker.periodicDose.absorptionLumen.rising,black_tea_drinker.periodicDose.pulse.T_start,black_tea_drinker.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,coffee_drinker.central.Cmax,coffee_drinker.central.Cmin,coffee_drinker.central.rising,coffee_drinker.periodicDose.absorptionLumen.Cmax,coffee_drinker.periodicDose.absorptionLumen.Cmin,coffee_drinker.periodicDose.absorptionLumen.rising,coffee_drinker.periodicDose.pulse.T_start,coffee_drinker.periodicDose.pulse.count)
 * Number of discrete states: 33 (coffee_drinker.periodicDose.pulse.count,coffee_drinker.central.Cmin,$whenCondition15,coffee_drinker.central.Cmax,$whenCondition14,coffee_drinker.central.rising,coffee_drinker.periodicDose.absorptionLumen.Cmin,$whenCondition13,coffee_drinker.periodicDose.absorptionLumen.Cmax,$whenCondition12,coffee_drinker.periodicDose.absorptionLumen.rising,black_tea_drinker.periodicDose.pulse.count,black_tea_drinker.central.Cmin,$whenCondition10,black_tea_drinker.central.Cmax,$whenCondition9,black_tea_drinker.central.rising,black_tea_drinker.periodicDose.absorptionLumen.Cmin,$whenCondition8,black_tea_drinker.periodicDose.absorptionLumen.Cmax,$whenCondition7,black_tea_drinker.periodicDose.absorptionLumen.rising,green_tee_drinker.periodicDose.pulse.count,green_tee_drinker.central.Cmin,$whenCondition5,green_tee_drinker.central.Cmax,$whenCondition4,green_tee_drinker.central.rising,green_tee_drinker.periodicDose.absorptionLumen.Cmin,$whenCondition3,green_tee_drinker.periodicDose.absorptionLumen.Cmax,$whenCondition2,green_tee_drinker.periodicDose.absorptionLumen.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (89):
 * Single equations (assignments): 77
 * Array equations: 0
 * Algorithm blocks: 6
 * Record equations: 0
 * When equations: 6
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0002102/0.7037, allocations: 191.7 kB / 1.016 GB, free: 5.633 MB / 0.698 GB
Notification: Performance of simCode: created initialization part: time 0.001926/0.7057, allocations: 1.843 MB / 1.018 GB, free: 4.277 MB / 0.698 GB
Notification: Performance of simCode: created event and clocks part: time 2.295e-06/0.7057, allocations: 4.594 kB / 1.018 GB, free: 4.273 MB / 0.698 GB
Notification: Performance of simCode: created simulation system equations: time 0.000908/0.7066, allocations: 0.9692 MB / 1.019 GB, free: 3.539 MB / 0.698 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008996/0.7075, allocations: 268.6 kB / 1.019 GB, free: 3.453 MB / 0.698 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003528/0.711, allocations: 2.834 MB / 1.022 GB, free: 1.477 MB / 0.698 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004398/0.7115, allocations: 368.5 kB / 1.022 GB, free: 1.363 MB / 0.698 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002113/0.7117, allocations: 73.33 kB / 1.022 GB, free: 1.352 MB / 0.698 GB
Notification: Performance of SimCode: time 6.31e-07/0.7117, allocations: 0 / 1.022 GB, free: 1.352 MB / 0.698 GB
Notification: Performance of Templates: time 0.01618/0.7278, allocations: 12.38 MB / 1.035 GB, free: 13.42 MB / 0.7137 GB
"
[Timeout remaining time 659]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine > Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 7.781865267083049]