Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001433/0.001433, allocations: 100.4 kB / 19.7 MB, free: 440 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001866/0.001866, allocations: 216.2 kB / 23 MB, free: 2.949 MB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.032/1.032, allocations: 230.6 MB / 256.8 MB, free: 9.617 MB / 202.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.771/1.771, allocations: 334.3 MB / 0.6323 GB, free: 7.941 MB / 442.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660] "Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.00172/0.00172, allocations: 67.91 kB / 0.8672 GB, free: 7.984 MB / 0.573 GB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1777/0.1794, allocations: 112.8 MB / 0.9773 GB, free: 6.898 MB / 0.6824 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.004151/0.1835, allocations: 5.111 MB / 0.9823 GB, free: 1.762 MB / 0.6824 GB Notification: Performance of NFInst.instExpressions: time 0.001707/0.1852, allocations: 1.282 MB / 0.9836 GB, free: 488 kB / 0.6824 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.000265/0.1855, allocations: 11.94 kB / 0.9836 GB, free: 476 kB / 0.6824 GB Notification: Performance of NFTyping.typeComponents: time 0.0002411/0.1857, allocations: 122.8 kB / 0.9837 GB, free: 352 kB / 0.6824 GB Notification: Performance of NFTyping.typeBindings: time 0.0004708/0.1862, allocations: 353.2 kB / 0.984 GB, free: 15.99 MB / 0.698 GB Notification: Performance of NFTyping.typeClassSections: time 0.0005784/0.1868, allocations: 255.6 kB / 0.9843 GB, free: 15.75 MB / 0.698 GB Notification: Performance of NFFlatten.flatten: time 0.0008674/0.1877, allocations: 1.233 MB / 0.9855 GB, free: 14.51 MB / 0.698 GB Notification: Performance of NFFlatten.resolveConnections: time 0.000277/0.1879, allocations: 203.5 kB / 0.9857 GB, free: 14.3 MB / 0.698 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0003588/0.1883, allocations: 446.6 kB / 0.9861 GB, free: 13.86 MB / 0.698 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004451/0.1887, allocations: 437.9 kB / 0.9865 GB, free: 13.43 MB / 0.698 GB Notification: Performance of NFPackage.collectConstants: time 9.935e-05/0.1888, allocations: 108 kB / 0.9866 GB, free: 13.32 MB / 0.698 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001088/0.189, allocations: 108 kB / 0.9867 GB, free: 13.22 MB / 0.698 GB Notification: Performance of NFScalarize.scalarize: time 9.837e-05/0.1891, allocations: 203.2 kB / 0.9869 GB, free: 13.02 MB / 0.698 GB Notification: Performance of NFVerifyModel.verify: time 0.0002673/0.1893, allocations: 442.2 kB / 0.9874 GB, free: 12.59 MB / 0.698 GB Notification: Performance of NFConvertDAE.convert: time 0.0006948/0.19, allocations: 1.152 MB / 0.9885 GB, free: 11.43 MB / 0.698 GB Notification: Performance of FrontEnd - DAE generated: time 3.837e-06/0.19, allocations: 0 / 0.9885 GB, free: 11.43 MB / 0.698 GB Notification: Performance of FrontEnd: time 1.914e-06/0.19, allocations: 0 / 0.9885 GB, free: 11.43 MB / 0.698 GB Notification: Performance of Transformations before backend: time 1.451e-05/0.19, allocations: 0 / 0.9885 GB, free: 11.43 MB / 0.698 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 165 * Number of variables: 165 Notification: Performance of Generate backend data structure: time 0.3798/0.5698, allocations: 1.395 MB / 0.9898 GB, free: 27.09 MB / 0.698 GB Notification: Performance of prepare preOptimizeDAE: time 3.937e-05/0.5699, allocations: 10.55 kB / 0.9898 GB, free: 27.09 MB / 0.698 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001292/0.57, allocations: 104.1 kB / 0.9899 GB, free: 27.04 MB / 0.698 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004664/0.5705, allocations: 453.2 kB / 0.9904 GB, free: 26.82 MB / 0.698 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.102e-05/0.5705, allocations: 53.59 kB / 0.9904 GB, free: 26.82 MB / 0.698 GB Notification: Performance of preOpt expandDerOperator (simulation): time 8.586e-05/0.5706, allocations: 76.08 kB / 0.9905 GB, free: 26.81 MB / 0.698 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0009363/0.5715, allocations: 0.8863 MB / 0.9914 GB, free: 26.54 MB / 0.698 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.95e-05/0.5715, allocations: 13.88 kB / 0.9914 GB, free: 26.54 MB / 0.698 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.875e-05/0.5716, allocations: 29.25 kB / 0.9914 GB, free: 26.54 MB / 0.698 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.242e-05/0.5716, allocations: 16.88 kB / 0.9914 GB, free: 26.54 MB / 0.698 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0008065/0.5724, allocations: 0.7756 MB / 0.9922 GB, free: 26.34 MB / 0.698 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002029/0.5744, allocations: 1.918 MB / 0.9941 GB, free: 25.75 MB / 0.698 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0008209/0.5752, allocations: 0.7323 MB / 0.9948 GB, free: 25.54 MB / 0.698 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.00044/0.5757, allocations: 482.6 kB / 0.9952 GB, free: 25.34 MB / 0.698 GB Notification: Performance of preOpt evalFunc (simulation): time 2.544e-05/0.5757, allocations: 12.53 kB / 0.9952 GB, free: 25.34 MB / 0.698 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.000758/0.5765, allocations: 1.036 MB / 0.9963 GB, free: 24.7 MB / 0.698 GB Notification: Performance of pre-optimization done (n=99): time 2.234e-06/0.5765, allocations: 0 / 0.9963 GB, free: 24.7 MB / 0.698 GB Notification: Performance of matching and sorting (n=105): time 0.003212/0.5797, allocations: 3.218 MB / 0.9994 GB, free: 22.84 MB / 0.698 GB Notification: Performance of inlineWhenForInitialization (initialization): time 8.788e-05/0.5798, allocations: 0.5456 MB / 0.9999 GB, free: 22.21 MB / 0.698 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000415/0.5802, allocations: 0.5124 MB / 1 GB, free: 21.96 MB / 0.698 GB Notification: Performance of collectPreVariables (initialization): time 5.23e-05/0.5802, allocations: 60.31 kB / 1 GB, free: 21.91 MB / 0.698 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001389/0.5804, allocations: 326.1 kB / 1.001 GB, free: 21.65 MB / 0.698 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001451/0.5805, allocations: 351.7 kB / 1.001 GB, free: 21.39 MB / 0.698 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001695/0.5807, allocations: 184.5 kB / 1.001 GB, free: 21.3 MB / 0.698 GB Notification: Performance of setup shared object (initialization): time 8.522e-05/0.5808, allocations: 397.8 kB / 1.002 GB, free: 20.95 MB / 0.698 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.000525/0.5813, allocations: 0.627 MB / 1.002 GB, free: 20.5 MB / 0.698 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0006024/0.5819, allocations: 0.9279 MB / 1.003 GB, free: 19.69 MB / 0.698 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.002515/0.5844, allocations: 2.473 MB / 1.006 GB, free: 17.8 MB / 0.698 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.1e-05/0.5844, allocations: 5.125 kB / 1.006 GB, free: 17.8 MB / 0.698 GB Notification: Performance of matching and sorting (n=157) (initialization): time 0.001718/0.5861, allocations: 1.711 MB / 1.007 GB, free: 16.72 MB / 0.698 GB Notification: Performance of prepare postOptimizeDAE: time 7.058e-05/0.5862, allocations: 265.5 kB / 1.008 GB, free: 16.43 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.239e-05/0.5862, allocations: 8.188 kB / 1.008 GB, free: 16.43 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.929e-05/0.5863, allocations: 13.78 kB / 1.008 GB, free: 16.43 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000562/0.5868, allocations: 236.5 kB / 1.008 GB, free: 16.4 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.259e-05/0.5868, allocations: 18.67 kB / 1.008 GB, free: 16.4 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000321/0.5872, allocations: 64.58 kB / 1.008 GB, free: 16.38 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 6.068e-05/0.5872, allocations: 55.39 kB / 1.008 GB, free: 16.36 MB / 0.698 GB Warning: Assuming fixed start value for the following 30 variables: remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_441524.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 32 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (148): * Single equations (assignments): 139 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0004418/0.5877, allocations: 0.5575 MB / 1.008 GB, free: 15.92 MB / 0.698 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001064/0.5878, allocations: 86.81 kB / 1.009 GB, free: 15.88 MB / 0.698 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.556e-05/0.5879, allocations: 84.98 kB / 1.009 GB, free: 15.81 MB / 0.698 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.173e-05/0.5879, allocations: 8.656 kB / 1.009 GB, free: 15.81 MB / 0.698 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.15e-05/0.5879, allocations: 1.672 kB / 1.009 GB, free: 15.81 MB / 0.698 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.717e-06/0.5879, allocations: 3.609 kB / 1.009 GB, free: 15.81 MB / 0.698 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002511/0.5904, allocations: 2.138 MB / 1.011 GB, free: 14.57 MB / 0.698 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.116e-06/0.5904, allocations: 0 / 1.011 GB, free: 14.57 MB / 0.698 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005067/0.5909, allocations: 167.4 kB / 1.011 GB, free: 14.56 MB / 0.698 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.854e-06/0.5909, allocations: 7 kB / 1.011 GB, free: 14.56 MB / 0.698 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.681e-05/0.591, allocations: 37.91 kB / 1.011 GB, free: 14.54 MB / 0.698 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 6.171e-06/0.591, allocations: 4.516 kB / 1.011 GB, free: 14.54 MB / 0.698 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.813e-06/0.591, allocations: 0 / 1.011 GB, free: 14.54 MB / 0.698 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002611/0.5936, allocations: 2.088 MB / 1.013 GB, free: 13.27 MB / 0.698 GB Notification: Performance of postOpt removeConstants (simulation): time 9.983e-05/0.5937, allocations: 78.03 kB / 1.013 GB, free: 13.21 MB / 0.698 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001314/0.5938, allocations: 45.09 kB / 1.013 GB, free: 13.19 MB / 0.698 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002844/0.5941, allocations: 54.2 kB / 1.013 GB, free: 13.18 MB / 0.698 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002501/0.5944, allocations: 95.14 kB / 1.013 GB, free: 13.15 MB / 0.698 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.046e-05/0.5944, allocations: 35.98 kB / 1.013 GB, free: 13.14 MB / 0.698 GB Notification: Performance of sorting global known variables: time 0.00046/0.5949, allocations: 356.9 kB / 1.014 GB, free: 12.97 MB / 0.698 GB Notification: Performance of sort global known variables: time 8e-08/0.5949, allocations: 0 / 1.014 GB, free: 12.97 MB / 0.698 GB Notification: Performance of remove unused functions: time 0.0006935/0.5956, allocations: 257.4 kB / 1.014 GB, free: 12.95 MB / 0.698 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC) * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising) * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0002233/0.5958, allocations: 189.8 kB / 1.014 GB, free: 12.82 MB / 0.698 GB Notification: Performance of simCode: created initialization part: time 0.001741/0.5976, allocations: 1.809 MB / 1.016 GB, free: 11.44 MB / 0.698 GB Notification: Performance of simCode: created event and clocks part: time 1.713e-06/0.5976, allocations: 0.6875 kB / 1.016 GB, free: 11.44 MB / 0.698 GB Notification: Performance of simCode: created simulation system equations: time 0.0008705/0.5984, allocations: 0.9395 MB / 1.017 GB, free: 10.71 MB / 0.698 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0007758/0.5992, allocations: 250.8 kB / 1.017 GB, free: 10.62 MB / 0.698 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003495/0.6027, allocations: 2.862 MB / 1.02 GB, free: 8.656 MB / 0.698 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004512/0.6032, allocations: 379.4 kB / 1.02 GB, free: 8.547 MB / 0.698 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001897/0.6033, allocations: 66.81 kB / 1.02 GB, free: 8.539 MB / 0.698 GB Notification: Performance of SimCode: time 7.11e-07/0.6033, allocations: 3.938 kB / 1.02 GB, free: 8.535 MB / 0.698 GB Notification: Performance of Templates: time 0.01686/0.6202, allocations: 12.16 MB / 1.032 GB, free: 4.445 MB / 0.698 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 8.575884419959038]