Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001388/0.001388, allocations: 100.4 kB / 19.71 MB, free: 440 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009649/0.0009649, allocations: 216.2 kB / 22.99 MB, free: 2.977 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.068/1.068, allocations: 230.6 MB / 256.8 MB, free: 9.605 MB / 202.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.716/1.716, allocations: 334.3 MB / 0.6323 GB, free: 7.957 MB / 442.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Pharmacolibrary requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.001717/0.001717, allocations: 71.89 kB / 0.867 GB, free: 8.121 MB / 0.573 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1923/0.1941, allocations: 112.8 MB / 0.9772 GB, free: 7.043 MB / 0.6824 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001721/0.1958, allocations: 1.27 MB / 0.9784 GB, free: 5.766 MB / 0.6824 GB
Notification: Performance of NFInst.instExpressions: time 0.0001985/0.196, allocations: 43.81 kB / 0.9785 GB, free: 5.723 MB / 0.6824 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.669e-05/0.196, allocations: 0 / 0.9785 GB, free: 5.723 MB / 0.6824 GB
Notification: Performance of NFTyping.typeComponents: time 8.337e-05/0.1961, allocations: 3.984 kB / 0.9785 GB, free: 5.719 MB / 0.6824 GB
Notification: Performance of NFTyping.typeBindings: time 4.06e-05/0.1961, allocations: 15.88 kB / 0.9785 GB, free: 5.703 MB / 0.6824 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001706/0.1963, allocations: 19.91 kB / 0.9785 GB, free: 5.684 MB / 0.6824 GB
Notification: Performance of NFFlatten.flatten: time 0.0001453/0.1965, allocations: 143.8 kB / 0.9786 GB, free: 5.543 MB / 0.6824 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.757e-05/0.1965, allocations: 4 kB / 0.9786 GB, free: 5.539 MB / 0.6824 GB
Notification: Performance of NFEvalConstants.evaluate: time 9.202e-05/0.1966, allocations: 67.86 kB / 0.9787 GB, free: 5.473 MB / 0.6824 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001379/0.1967, allocations: 75.81 kB / 0.9788 GB, free: 5.398 MB / 0.6824 GB
Notification: Performance of NFPackage.collectConstants: time 2.532e-05/0.1968, allocations: 8 kB / 0.9788 GB, free: 5.391 MB / 0.6824 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.784e-05/0.1968, allocations: 8 kB / 0.9788 GB, free: 5.383 MB / 0.6824 GB
Notification: Performance of NFScalarize.scalarize: time 3.739e-05/0.1968, allocations: 39.94 kB / 0.9788 GB, free: 5.344 MB / 0.6824 GB
Notification: Performance of NFVerifyModel.verify: time 4.696e-05/0.1969, allocations: 31.83 kB / 0.9789 GB, free: 5.312 MB / 0.6824 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001059/0.197, allocations: 79.72 kB / 0.9789 GB, free: 5.234 MB / 0.6824 GB
Notification: Performance of FrontEnd - DAE generated: time 4.077e-06/0.197, allocations: 0 / 0.9789 GB, free: 5.234 MB / 0.6824 GB
Notification: Performance of FrontEnd: time 1.753e-06/0.197, allocations: 0 / 0.9789 GB, free: 5.234 MB / 0.6824 GB
Notification: Performance of Transformations before backend: time 5.741e-06/0.197, allocations: 0 / 0.9789 GB, free: 5.234 MB / 0.6824 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.0009631/0.1979, allocations: 0.4901 MB / 0.9794 GB, free: 4.711 MB / 0.6824 GB
Notification: Performance of prepare preOptimizeDAE: time 3.819e-05/0.198, allocations: 10.11 kB / 0.9794 GB, free: 4.703 MB / 0.6824 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 3.516e-05/0.198, allocations: 8.891 kB / 0.9794 GB, free: 4.695 MB / 0.6824 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001337/0.1982, allocations: 122.5 kB / 0.9796 GB, free: 4.551 MB / 0.6824 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.578e-06/0.1982, allocations: 12.38 kB / 0.9796 GB, free: 4.539 MB / 0.6824 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.913e-05/0.1982, allocations: 4.375 kB / 0.9796 GB, free: 4.535 MB / 0.6824 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002922/0.1985, allocations: 143.8 kB / 0.9797 GB, free: 4.383 MB / 0.6824 GB
Notification: Performance of preOpt findStateOrder (simulation): time 8.125e-06/0.1985, allocations: 8.188 kB / 0.9797 GB, free: 4.375 MB / 0.6824 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.621e-05/0.1985, allocations: 7.938 kB / 0.9797 GB, free: 4.367 MB / 0.6824 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.629e-06/0.1985, allocations: 0 / 0.9797 GB, free: 4.367 MB / 0.6824 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003107/0.1988, allocations: 139.8 kB / 0.9799 GB, free: 4.23 MB / 0.6824 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002485/0.1991, allocations: 245.2 kB / 0.9801 GB, free: 3.957 MB / 0.6824 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0002049/0.1993, allocations: 86.5 kB / 0.9802 GB, free: 3.863 MB / 0.6824 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001885/0.1995, allocations: 100.8 kB / 0.9803 GB, free: 3.762 MB / 0.6824 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.566e-05/0.1995, allocations: 7.938 kB / 0.9803 GB, free: 3.754 MB / 0.6824 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.677e-05/0.1995, allocations: 38.56 kB / 0.9803 GB, free: 3.707 MB / 0.6824 GB
Notification: Performance of pre-optimization done (n=11): time 8.61e-07/0.1995, allocations: 0 / 0.9803 GB, free: 3.707 MB / 0.6824 GB
Notification: Performance of matching and sorting (n=11): time 0.0005984/0.2001, allocations: 289.6 kB / 0.9806 GB, free: 3.418 MB / 0.6824 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.97e-05/0.2001, allocations: 51.41 kB / 0.9806 GB, free: 3.355 MB / 0.6824 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 7.733e-05/0.2002, allocations: 113.8 kB / 0.9808 GB, free: 3.234 MB / 0.6824 GB
Notification: Performance of collectPreVariables (initialization): time 1.648e-05/0.2002, allocations: 29.7 kB / 0.9808 GB, free: 3.199 MB / 0.6824 GB
Notification: Performance of collectInitialEqns (initialization): time 4.388e-05/0.2003, allocations: 92.12 kB / 0.9809 GB, free: 3.105 MB / 0.6824 GB
Notification: Performance of collectInitialBindings (initialization): time 2.516e-05/0.2003, allocations: 35.66 kB / 0.9809 GB, free: 3.07 MB / 0.6824 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.325e-05/0.2003, allocations: 29.7 kB / 0.9809 GB, free: 3.035 MB / 0.6824 GB
Notification: Performance of setup shared object (initialization): time 7.868e-05/0.2004, allocations: 318.8 kB / 0.9812 GB, free: 2.715 MB / 0.6824 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001709/0.2006, allocations: 79.92 kB / 0.9813 GB, free: 2.637 MB / 0.6824 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.00017/0.2007, allocations: 93.64 kB / 0.9814 GB, free: 2.539 MB / 0.6824 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0003296/0.2011, allocations: 173.5 kB / 0.9816 GB, free: 2.363 MB / 0.6824 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.804e-06/0.2011, allocations: 0 / 0.9816 GB, free: 2.363 MB / 0.6824 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0003848/0.2015, allocations: 225.3 kB / 0.9818 GB, free: 2.137 MB / 0.6824 GB
Notification: Performance of prepare postOptimizeDAE: time 1.261e-05/0.2015, allocations: 4 kB / 0.9818 GB, free: 2.133 MB / 0.6824 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.899e-06/0.2015, allocations: 0 / 0.9818 GB, free: 2.133 MB / 0.6824 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.1e-05/0.2015, allocations: 0 / 0.9818 GB, free: 2.133 MB / 0.6824 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002141/0.2017, allocations: 75.97 kB / 0.9819 GB, free: 2.059 MB / 0.6824 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.352e-06/0.2017, allocations: 0 / 0.9819 GB, free: 2.059 MB / 0.6824 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001458/0.2019, allocations: 59.86 kB / 0.9819 GB, free: 2 MB / 0.6824 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.265e-05/0.2019, allocations: 4 kB / 0.9819 GB, free: 1.996 MB / 0.6824 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 7.003e-05/0.2019, allocations: 122.4 kB / 0.982 GB, free: 1.867 MB / 0.6824 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.343e-05/0.202, allocations: 11.89 kB / 0.982 GB, free: 1.855 MB / 0.6824 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0007349/0.2027, allocations: 305.7 kB / 0.9823 GB, free: 1.547 MB / 0.6824 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.616e-06/0.2027, allocations: 4 kB / 0.9823 GB, free: 1.543 MB / 0.6824 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 4.628e-06/0.2027, allocations: 0 / 0.9823 GB, free: 1.543 MB / 0.6824 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.186e-06/0.2027, allocations: 0 / 0.9823 GB, free: 1.543 MB / 0.6824 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001207/0.2028, allocations: 153.6 kB / 0.9825 GB, free: 1.363 MB / 0.6824 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.943e-06/0.2028, allocations: 0 / 0.9825 GB, free: 1.363 MB / 0.6824 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002017/0.203, allocations: 87.86 kB / 0.9826 GB, free: 1.277 MB / 0.6824 GB
Notification: Performance of postOpt tearingSystem (simulation): time 4.318e-06/0.203, allocations: 3.938 kB / 0.9826 GB, free: 1.273 MB / 0.6824 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.363e-05/0.203, allocations: 11.88 kB / 0.9826 GB, free: 1.262 MB / 0.6824 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.743e-06/0.203, allocations: 0 / 0.9826 GB, free: 1.262 MB / 0.6824 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.663e-06/0.203, allocations: 4 kB / 0.9826 GB, free: 1.258 MB / 0.6824 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.000413/0.2035, allocations: 282.3 kB / 0.9829 GB, free: 0.9648 MB / 0.6824 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.234e-05/0.2035, allocations: 7.953 kB / 0.9829 GB, free: 0.957 MB / 0.6824 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.778e-05/0.2035, allocations: 3.938 kB / 0.9829 GB, free: 0.9531 MB / 0.6824 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000143/0.2036, allocations: 55.94 kB / 0.9829 GB, free: 0.8984 MB / 0.6824 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 6.561e-05/0.2037, allocations: 23.95 kB / 0.9829 GB, free: 0.875 MB / 0.6824 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.398e-06/0.2037, allocations: 8 kB / 0.983 GB, free: 0.8672 MB / 0.6824 GB
Notification: Performance of sorting global known variables: time 3.221e-05/0.2037, allocations: 95.27 kB / 0.983 GB, free: 0.7734 MB / 0.6824 GB
Notification: Performance of sort global known variables: time 5e-08/0.2037, allocations: 0 / 0.983 GB, free: 0.7734 MB / 0.6824 GB
Notification: Performance of remove unused functions: time 0.0001407/0.2039, allocations: 28 kB / 0.9831 GB, free: 0.7461 MB / 0.6824 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 6.966e-05/0.2039, allocations: 99.19 kB / 0.9832 GB, free: 0.6406 MB / 0.6824 GB
Notification: Performance of simCode: created initialization part: time 0.000406/0.2044, allocations: 203.5 kB / 0.9834 GB, free: 456 kB / 0.6824 GB
Notification: Performance of simCode: created event and clocks part: time 1.473e-06/0.2044, allocations: 0 / 0.9834 GB, free: 456 kB / 0.6824 GB
Notification: Performance of simCode: created simulation system equations: time 0.0001883/0.2045, allocations: 107.9 kB / 0.9835 GB, free: 348 kB / 0.6824 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001519/0.2047, allocations: 11.94 kB / 0.9835 GB, free: 336 kB / 0.6824 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0003971/0.2051, allocations: 275.6 kB / 0.9837 GB, free: 28 kB / 0.6824 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 6.513e-05/0.2052, allocations: 87.28 kB / 0.9838 GB, free: 15.92 MB / 0.698 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 8.809e-05/0.2052, allocations: 23.42 kB / 0.9838 GB, free: 15.9 MB / 0.698 GB
Notification: Performance of SimCode: time 5.51e-07/0.2052, allocations: 4 kB / 0.9838 GB, free: 15.89 MB / 0.698 GB
Notification: Performance of Templates: time 0.002387/0.2076, allocations: 1.918 MB / 0.9857 GB, free: 13.98 MB / 0.698 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 7.382510907948017]