Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001573/0.001573, allocations: 100.3 kB / 19.7 MB, free: 2.012 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00193/0.00193, allocations: 218.1 kB / 22.99 MB, free: 4.914 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.433/1.433, allocations: 230.6 MB / 256.8 MB, free: 7.797 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.14/0.14, allocations: 23.88 MB / 337.1 MB, free: 10.96 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002084/0.002084, allocations: 63.91 kB / 472.4 MB, free: 7.008 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.3148/0.3169, allocations: 59.86 MB / 0.5198 GB, free: 9.793 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.1246/0.4415, allocations: 74.38 MB / 0.5924 GB, free: 15.41 MB / 446.1 MB
Notification: Performance of NFInst.instExpressions: time 0.5628/1.004, allocations: 191.2 MB / 0.7792 GB, free: 16.24 MB / 0.5606 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01473/1.019, allocations: 231.8 kB / 0.7794 GB, free: 16.24 MB / 0.5606 GB
Notification: Performance of NFTyping.typeComponents: time 0.01648/1.035, allocations: 4.446 MB / 0.7837 GB, free: 16.21 MB / 0.5606 GB
Notification: Performance of NFTyping.typeBindings: time 0.05612/1.092, allocations: 17.87 MB / 0.8012 GB, free: 15.64 MB / 0.5606 GB
Notification: Performance of NFTyping.typeClassSections: time 0.08319/1.175, allocations: 32.65 MB / 0.8331 GB, free: 40 kB / 0.5606 GB
Notification: Performance of NFFlatten.flatten: time 0.1029/1.278, allocations: 89.11 MB / 0.9201 GB, free: 2.191 MB / 0.6387 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.08365/1.361, allocations: 51.85 MB / 0.9707 GB, free: 220 kB / 0.6856 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.8062/2.167, allocations: 56.58 MB / 1.026 GB, free: 43.5 MB / 0.7169 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.1007/2.268, allocations: 54.22 MB / 1.079 GB, free: 40.67 MB / 0.7169 GB
Notification: Performance of NFPackage.collectConstants: time 0.04343/2.312, allocations: 12.2 MB / 1.091 GB, free: 40.67 MB / 0.7169 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.1171/2.429, allocations: 33.89 MB / 1.124 GB, free: 31.2 MB / 0.7169 GB
Notification: Performance of NFScalarize.scalarize: time 0.04743/2.476, allocations: 24.03 MB / 1.147 GB, free: 11.65 MB / 0.7169 GB
Notification: Performance of NFVerifyModel.verify: time 0.1311/2.607, allocations: 39.36 MB / 1.186 GB, free: 12.65 MB / 0.7325 GB
Notification: Performance of NFConvertDAE.convert: time 1.006/3.613, allocations: 159.6 MB / 1.342 GB, free: 107.5 MB / 0.8264 GB
Notification: Performance of FrontEnd - DAE generated: time 6.382e-06/3.613, allocations: 0 / 1.342 GB, free: 107.5 MB / 0.8264 GB
Notification: Performance of FrontEnd: time 1.804e-06/3.613, allocations: 0 / 1.342 GB, free: 107.5 MB / 0.8264 GB
Notification: Performance of Transformations before backend: time 0.003103/3.616, allocations: 0 / 1.342 GB, free: 107.5 MB / 0.8264 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.2877/3.904, allocations: 71.68 MB / 1.412 GB, free: 87.08 MB / 0.8264 GB
Notification: Performance of prepare preOptimizeDAE: time 4.728e-05/3.904, allocations: 7.75 kB / 1.412 GB, free: 87.08 MB / 0.8264 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.08898/3.993, allocations: 11.94 MB / 1.423 GB, free: 83.12 MB / 0.8264 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.1119/4.105, allocations: 42.62 MB / 1.465 GB, free: 65.64 MB / 0.8264 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.007214/4.112, allocations: 9.243 MB / 1.474 GB, free: 56.32 MB / 0.8264 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.03982/4.152, allocations: 4.594 MB / 1.479 GB, free: 51.73 MB / 0.8264 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.3285/4.481, allocations: 112.9 MB / 1.589 GB, free: 2.168 MB / 0.8889 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002004/4.483, allocations: 28.03 kB / 1.589 GB, free: 2.156 MB / 0.8889 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.03418/4.517, allocations: 1.762 MB / 1.591 GB, free: 404 kB / 0.8889 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001064/4.518, allocations: 1.055 MB / 1.592 GB, free: 15.34 MB / 0.9045 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.6472/5.165, allocations: 153 MB / 1.741 GB, free: 334.3 MB / 0.9358 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.203/6.368, allocations: 389 MB / 2.121 GB, free: 281.8 MB / 0.9358 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.077/8.445, allocations: 0.6474 GB / 2.768 GB, free: 200.7 MB / 0.9358 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.1054/8.55, allocations: 60.06 MB / 2.827 GB, free: 142.5 MB / 0.9358 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.9659/9.516, allocations: 254.6 MB / 3.076 GB, free: 273.6 MB / 0.9358 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003037/9.517, allocations: 342.3 kB / 3.076 GB, free: 273.4 MB / 0.9358 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.09496/9.612, allocations: 29.13 MB / 3.104 GB, free: 266.5 MB / 0.9358 GB
Notification: Performance of pre-optimization done (n=2985): time 0.0001672/9.612, allocations: 1.906 kB / 3.104 GB, free: 266.5 MB / 0.9358 GB
Notification: Performance of matching and sorting (n=3387): time 2.455/12.07, allocations: 423.7 MB / 3.518 GB, free: 260.9 MB / 0.9358 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0003358/12.07, allocations: 449.6 kB / 3.519 GB, free: 260.8 MB / 0.9358 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.05735/12.12, allocations: 30.72 MB / 3.549 GB, free: 245.6 MB / 0.9358 GB
Notification: Performance of collectPreVariables (initialization): time 0.0134/12.14, allocations: 0.5687 MB / 3.549 GB, free: 245.1 MB / 0.9358 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01589/12.15, allocations: 21.64 MB / 3.57 GB, free: 230 MB / 0.9358 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02132/12.18, allocations: 12.42 MB / 3.582 GB, free: 217.7 MB / 0.9358 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.05059/12.23, allocations: 9.934 MB / 3.592 GB, free: 207.8 MB / 0.9358 GB
Notification: Performance of setup shared object (initialization): time 4.757e-05/12.23, allocations: 303.5 kB / 3.592 GB, free: 207.5 MB / 0.9358 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.06751/12.29, allocations: 39.05 MB / 3.63 GB, free: 168.4 MB / 0.9358 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.07781/12.37, allocations: 53.24 MB / 3.682 GB, free: 108.9 MB / 0.9358 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.543/12.91, allocations: 96.37 MB / 3.777 GB, free: 273.6 MB / 0.9358 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.000656/12.92, allocations: 124.4 kB / 3.777 GB, free: 273.6 MB / 0.9358 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 1.355/14.27, allocations: 257.1 MB / 4.028 GB, free: 138 MB / 0.9358 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0008104/14.27, allocations: 202.8 kB / 4.028 GB, free: 137.8 MB / 0.9358 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.001034/14.27, allocations: 444 kB / 4.028 GB, free: 137.4 MB / 0.9358 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.1779/14.45, allocations: 73.71 MB / 4.1 GB, free: 63.93 MB / 0.9358 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.05245/14.5, allocations: 11.18 MB / 4.111 GB, free: 52.74 MB / 0.9358 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.074/15.58, allocations: 309.6 MB / 4.414 GB, free: 127.2 MB / 0.9358 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0568/15.63, allocations: 2.476 MB / 4.416 GB, free: 124.7 MB / 0.9358 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01845/15.65, allocations: 2.799 MB / 4.419 GB, free: 121.9 MB / 0.9358 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0528/15.7, allocations: 18.34 MB / 4.437 GB, free: 104.3 MB / 0.9358 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02355/15.73, allocations: 3.166 MB / 4.44 GB, free: 102.9 MB / 0.9358 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 1.303/17.03, allocations: 152.3 MB / 4.589 GB, free: 254.6 MB / 0.9358 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003643/17.03, allocations: 364.1 kB / 4.589 GB, free: 254.6 MB / 0.9358 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0005764/17.03, allocations: 52.72 kB / 4.589 GB, free: 254.6 MB / 0.9358 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001244/17.03, allocations: 184.2 kB / 4.589 GB, free: 254.6 MB / 0.9358 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.9731/18.01, allocations: 223.2 MB / 4.807 GB, free: 121 MB / 0.9358 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0003751/18.01, allocations: 13.97 kB / 4.807 GB, free: 121 MB / 0.9358 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04426/18.05, allocations: 7.252 MB / 4.814 GB, free: 113.8 MB / 0.9358 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.09704/18.15, allocations: 39.74 MB / 4.853 GB, free: 74.31 MB / 0.9358 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01286/18.16, allocations: 1.444 MB / 4.854 GB, free: 72.86 MB / 0.9358 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.7874/18.95, allocations: 155.6 MB / 5.006 GB, free: 238 MB / 0.9358 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.147e-05/18.95, allocations: 22.66 kB / 5.006 GB, free: 238 MB / 0.9358 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.9005/19.85, allocations: 200.2 MB / 5.202 GB, free: 104.2 MB / 0.9358 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.04139/19.89, allocations: 11.32 MB / 5.213 GB, free: 94.75 MB / 0.9358 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01888/19.91, allocations: 0.9177 MB / 5.214 GB, free: 93.83 MB / 0.9358 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.04104/19.95, allocations: 1.545 MB / 5.215 GB, free: 92.29 MB / 0.9358 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.02574/19.98, allocations: 4.684 MB / 5.22 GB, free: 87.59 MB / 0.9358 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01319/19.99, allocations: 1.382 MB / 5.221 GB, free: 86.2 MB / 0.9358 GB
Notification: Performance of sorting global known variables: time 0.03959/20.03, allocations: 20.81 MB / 5.242 GB, free: 65.54 MB / 0.9358 GB
Notification: Performance of sort global known variables: time 2.01e-07/20.03, allocations: 0 / 5.242 GB, free: 65.54 MB / 0.9358 GB
Notification: Performance of remove unused functions: time 0.09203/20.12, allocations: 20.21 MB / 5.261 GB, free: 45.53 MB / 0.9358 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.03248/20.15, allocations: 10.8 MB / 5.272 GB, free: 36.01 MB / 0.9358 GB
Notification: Performance of simCode: created initialization part: time 0.648/20.8, allocations: 85.28 MB / 5.355 GB, free: 260.4 MB / 0.9358 GB
Notification: Performance of simCode: created event and clocks part: time 1.904e-05/20.8, allocations: 1.938 kB / 5.355 GB, free: 260.4 MB / 0.9358 GB
Notification: Performance of simCode: created simulation system equations: time 0.1384/20.94, allocations: 54.5 MB / 5.408 GB, free: 238.8 MB / 0.9358 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.07325/21.01, allocations: 7.702 MB / 5.416 GB, free: 235.9 MB / 0.9358 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.3014/21.31, allocations: 121.8 MB / 5.535 GB, free: 154.7 MB / 0.9358 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.05979/21.37, allocations: 29.65 MB / 5.564 GB, free: 132.8 MB / 0.9358 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.03219/21.41, allocations: 4.613 MB / 5.568 GB, free: 128.9 MB / 0.9358 GB
Notification: Performance of SimCode: time 1.433e-06/21.41, allocations: 0 / 5.568 GB, free: 128.9 MB / 0.9358 GB
Notification: Performance of Templates: time 7.665/29.07, allocations: 3.31 GB / 8.879 GB, free: 52.57 MB / 0.9827 GB
"
[Timeout remaining time 631]
make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 101.98854830116034]
Failed to read output from testmodel.py, exit status != 0:
29.081902171019465 29.091711546 25.47571105
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7fda5c3f2fe0>