Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009505/0.0009505, allocations: 96.36 kB / 19.7 MB, free: 444 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009374/0.0009374, allocations: 216.3 kB / 23 MB, free: 2.957 MB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9664/0.9664, allocations: 230.6 MB / 256.8 MB, free: 9.59 MB / 202.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo): time 0.05675/0.05675, allocations: 17.16 MB / 330.3 MB, free: 0.7227 MB / 250.7 MB
"
[Timeout remaining time 180]
Using package Bodylight with version 1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC")
translateModel(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") [Timeout 660]
"Notification: Bodylight requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.001432/0.001432, allocations: 79.88 kB / 460.7 MB, free: 27.14 MB / 330.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.09064/0.09208, allocations: 57.77 MB / 0.5063 GB, free: 1.277 MB / 362.7 MB
Notification: Performance of NFInst.instantiate(Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC): time 0.004937/0.09701, allocations: 5.268 MB / 0.5115 GB, free: 11.98 MB / 378.7 MB
Notification: Performance of NFInst.instExpressions: time 0.00673/0.1037, allocations: 5.594 MB / 0.5169 GB, free: 6.367 MB / 378.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0005692/0.1043, allocations: 47.5 kB / 0.517 GB, free: 6.32 MB / 378.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0003714/0.1047, allocations: 186.3 kB / 0.5171 GB, free: 6.137 MB / 378.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.readReal' contains a call to impure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.002145/0.1068, allocations: 1.01 MB / 0.5181 GB, free: 5.121 MB / 378.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.001933/0.1088, allocations: 1.023 MB / 0.5191 GB, free: 4.109 MB / 378.7 MB
Notification: Performance of NFFlatten.flatten: time 0.00246/0.1112, allocations: 3.14 MB / 0.5222 GB, free: 0.957 MB / 378.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0006135/0.1118, allocations: 0.5585 MB / 0.5227 GB, free: 372 kB / 378.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0007986/0.1126, allocations: 1.21 MB / 0.5239 GB, free: 15.14 MB / 394.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001263/0.1139, allocations: 1.626 MB / 0.5255 GB, free: 13.51 MB / 394.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002266/0.1141, allocations: 168 kB / 0.5257 GB, free: 13.35 MB / 394.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0003225/0.1144, allocations: 180 kB / 0.5258 GB, free: 13.17 MB / 394.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0003903/0.1148, allocations: 0.6499 MB / 0.5265 GB, free: 12.52 MB / 394.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001152/0.116, allocations: 1.057 MB / 0.5275 GB, free: 11.46 MB / 394.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001875/0.1179, allocations: 3.252 MB / 0.5307 GB, free: 8.191 MB / 394.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.167e-06/0.1179, allocations: 0 / 0.5307 GB, free: 8.191 MB / 394.7 MB
Notification: Performance of FrontEnd: time 3.026e-06/0.1179, allocations: 0 / 0.5307 GB, free: 8.191 MB / 394.7 MB
Notification: Performance of Transformations before backend: time 3.092e-05/0.1179, allocations: 0 / 0.5307 GB, free: 8.191 MB / 394.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 387
 * Number of variables: 387
Notification: Performance of Generate backend data structure: time 0.004244/0.1221, allocations: 3.5 MB / 0.5341 GB, free: 4.641 MB / 394.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.994e-05/0.1222, allocations: 8.031 kB / 0.5341 GB, free: 4.633 MB / 394.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0006092/0.1228, allocations: 382.9 kB / 0.5345 GB, free: 4.258 MB / 394.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001978/0.1248, allocations: 1.784 MB / 0.5362 GB, free: 2.41 MB / 394.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.66e-05/0.1248, allocations: 127.4 kB / 0.5363 GB, free: 2.285 MB / 394.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.00016/0.125, allocations: 168.1 kB / 0.5365 GB, free: 2.121 MB / 394.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.00215/0.1271, allocations: 2.217 MB / 0.5387 GB, free: 15.85 MB / 410.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.579e-05/0.1272, allocations: 0 / 0.5387 GB, free: 15.85 MB / 410.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 9.364e-05/0.1273, allocations: 60 kB / 0.5387 GB, free: 15.79 MB / 410.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.378e-05/0.1273, allocations: 66.92 kB / 0.5388 GB, free: 15.73 MB / 410.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002099/0.1294, allocations: 2.018 MB / 0.5408 GB, free: 13.7 MB / 410.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.007406/0.1368, allocations: 6.6 MB / 0.5472 GB, free: 6.961 MB / 410.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001755/0.1386, allocations: 1.553 MB / 0.5487 GB, free: 5.34 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0008566/0.1394, allocations: 0.9255 MB / 0.5496 GB, free: 4.391 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 5.787e-05/0.1395, allocations: 17 kB / 0.5496 GB, free: 4.371 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.773e-05/0.1395, allocations: 55.5 kB / 0.5497 GB, free: 4.309 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=118): time 2.585e-06/0.1395, allocations: 0 / 0.5497 GB, free: 4.309 MB / 410.7 MB
Notification: Performance of matching and sorting (n=183): time 0.2554/0.3949, allocations: 28.79 MB / 0.5778 GB, free: 34.88 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 7.058e-05/0.395, allocations: 257.3 kB / 0.578 GB, free: 34.57 MB / 410.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002255/0.3973, allocations: 2.34 MB / 0.5803 GB, free: 32.23 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0002504/0.3975, allocations: 65.7 kB / 0.5804 GB, free: 32.16 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.000435/0.398, allocations: 1.088 MB / 0.5815 GB, free: 31.15 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003488/0.3983, allocations: 0.6632 MB / 0.5821 GB, free: 30.58 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004137/0.3987, allocations: 448.3 kB / 0.5825 GB, free: 30.13 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 2.671e-05/0.3987, allocations: 301.1 kB / 0.5828 GB, free: 29.84 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.001417/0.4002, allocations: 1.733 MB / 0.5845 GB, free: 28.1 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.00152/0.4017, allocations: 2.382 MB / 0.5868 GB, free: 25.44 MB / 410.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.002934/0.4046, allocations: 4.262 MB / 0.591 GB, free: 20.91 MB / 410.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.444e-06/0.4046, allocations: 4 kB / 0.591 GB, free: 20.9 MB / 410.7 MB
Notification: Performance of matching and sorting (n=291) (initialization): time 0.01138/0.416, allocations: 8.607 MB / 0.5994 GB, free: 12.28 MB / 410.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.591e-05/0.416, allocations: 19.16 kB / 0.5994 GB, free: 12.26 MB / 410.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.189e-05/0.416, allocations: 20 kB / 0.5994 GB, free: 12.24 MB / 410.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.00876/0.4248, allocations: 5.246 MB / 0.6046 GB, free: 7 MB / 410.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0008781/0.4257, allocations: 451.3 kB / 0.605 GB, free: 6.559 MB / 410.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.03081/0.4565, allocations: 24.71 MB / 0.6291 GB, free: 13.68 MB / 442.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.002015/0.4585, allocations: 256.1 kB / 0.6294 GB, free: 13.44 MB / 442.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001719/0.4587, allocations: 100 kB / 0.6295 GB, free: 13.34 MB / 442.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 89
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (205):
 * Single equations (assignments): 203
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(8,36,34.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of prepare postOptimizeDAE: time 0.00121/0.4599, allocations: 0.8573 MB / 0.6303 GB, free: 12.48 MB / 442.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004102/0.4603, allocations: 262.3 kB / 0.6306 GB, free: 12.23 MB / 442.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0004933/0.4608, allocations: 420.6 kB / 0.631 GB, free: 11.8 MB / 442.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.418e-05/0.4608, allocations: 20.19 kB / 0.631 GB, free: 11.79 MB / 442.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.987e-05/0.4608, allocations: 8 kB / 0.631 GB, free: 11.78 MB / 442.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.27e-05/0.4608, allocations: 11.91 kB / 0.631 GB, free: 11.77 MB / 442.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.02174/0.4826, allocations: 11.71 MB / 0.6424 GB, free: 15.86 MB / 458.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.651e-05/0.4826, allocations: 16 kB / 0.6424 GB, free: 15.84 MB / 458.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006024/0.4832, allocations: 235.5 kB / 0.6427 GB, free: 15.61 MB / 458.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.01212/0.4953, allocations: 4.997 MB / 0.6476 GB, free: 10.62 MB / 458.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.000394/0.4957, allocations: 52 kB / 0.6476 GB, free: 10.57 MB / 458.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.02674/0.5224, allocations: 23.72 MB / 0.6708 GB, free: 2.633 MB / 474.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.081e-05/0.5225, allocations: 23.88 kB / 0.6708 GB, free: 2.609 MB / 474.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.01405/0.5365, allocations: 10.8 MB / 0.6813 GB, free: 7.582 MB / 490.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.001025/0.5375, allocations: 0.6272 MB / 0.6819 GB, free: 6.953 MB / 490.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002112/0.5377, allocations: 59.97 kB / 0.682 GB, free: 6.895 MB / 490.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.001076/0.5388, allocations: 209.9 kB / 0.6822 GB, free: 6.691 MB / 490.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000515/0.5393, allocations: 256.2 kB / 0.6824 GB, free: 6.441 MB / 490.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 8.675e-05/0.5394, allocations: 64 kB / 0.6825 GB, free: 6.379 MB / 490.7 MB
Notification: Performance of sorting global known variables: time 0.001776/0.5412, allocations: 1.583 MB / 0.6841 GB, free: 4.781 MB / 490.7 MB
Notification: Performance of sort global known variables: time 4.91e-07/0.5412, allocations: 4 kB / 0.6841 GB, free: 4.777 MB / 490.7 MB
Notification: Performance of remove unused functions: time 0.002029/0.5432, allocations: 1.004 MB / 0.685 GB, free: 3.773 MB / 490.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 72
 * Number of states: 7 (totalHb.state[1],T0_in_T.state[3],T0_in_T.state[2],T0_in_T.state[1],R0_in_R.state[3],R0_in_R.state[2],R0_in_R.state[1])
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (111):
 * Single equations (assignments): 109
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(8,36,34.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(10,34)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001963/0.5434, allocations: 176.8 kB / 0.6852 GB, free: 3.598 MB / 490.7 MB
Notification: Performance of simCode: created initialization part: time 0.006478/0.5499, allocations: 5.332 MB / 0.6904 GB, free: 14.24 MB / 0.4948 GB
Notification: Performance of simCode: created event and clocks part: time 6.422e-06/0.5499, allocations: 8.125 kB / 0.6904 GB, free: 14.23 MB / 0.4948 GB
Notification: Performance of simCode: created simulation system equations: time 0.004417/0.5543, allocations: 3.277 MB / 0.6936 GB, free: 10.94 MB / 0.4948 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.00186/0.5562, allocations: 0.5626 MB / 0.6942 GB, free: 10.4 MB / 0.4948 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.006031/0.5622, allocations: 6.325 MB / 0.7003 GB, free: 3.852 MB / 0.4948 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.001176/0.5634, allocations: 1.518 MB / 0.7018 GB, free: 2.293 MB / 0.4948 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0002748/0.5637, allocations: 139.4 kB / 0.702 GB, free: 2.156 MB / 0.4948 GB
Notification: Performance of SimCode: time 6.41e-07/0.5637, allocations: 0 / 0.702 GB, free: 2.156 MB / 0.4948 GB
Notification: Performance of Templates: time 0.04392/0.6076, allocations: 63.61 MB / 0.7641 GB, free: 2.605 MB / 0.5573 GB
"
[Timeout remaining time 659]
make -j1 -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.makefile [Timeout 660]
(rm -f Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; mkfifo Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; head -c 1048576 < Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe >> ../files/Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.sim & ./Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC > Bodylight_Bodylight.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 8.133008071687073]