Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001532/0.001532, allocations: 114.3 kB / 18.94 MB, free: 2.934 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001714/0.001714, allocations: 215.4 kB / 22.25 MB, free: 5.082 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.383/1.383, allocations: 230.6 MB / 256 MB, free: 8.031 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1301/0.1301, allocations: 23.86 MB / 336.3 MB, free: 11.32 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.00198/0.00198, allocations: 67.89 kB / 471.7 MB, free: 7.238 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.2847/0.2867, allocations: 59.86 MB / 0.5191 GB, free: 9.832 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.09112/0.3779, allocations: 83.61 MB / 0.6007 GB, free: 6.402 MB / 446.1 MB
Notification: Performance of NFInst.instExpressions: time 0.4716/0.8494, allocations: 218.1 MB / 0.8137 GB, free: 15.88 MB / 0.5606 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01219/0.8616, allocations: 232.2 kB / 0.814 GB, free: 15.88 MB / 0.5606 GB
Notification: Performance of NFTyping.typeComponents: time 0.01269/0.8743, allocations: 4.914 MB / 0.8188 GB, free: 14.71 MB / 0.5606 GB
Notification: Performance of NFTyping.typeBindings: time 0.04764/0.922, allocations: 17.9 MB / 0.8362 GB, free: 7.266 MB / 0.5606 GB
Notification: Performance of NFTyping.typeClassSections: time 0.08104/1.003, allocations: 32.64 MB / 0.8681 GB, free: 1.574 MB / 0.5762 GB
Notification: Performance of NFFlatten.flatten: time 0.09611/1.099, allocations: 89.19 MB / 0.9552 GB, free: 9.008 MB / 0.67 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.692/1.791, allocations: 52.3 MB / 1.006 GB, free: 11.09 MB / 0.7013 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.07959/1.871, allocations: 56.52 MB / 1.061 GB, free: 8.133 MB / 0.7013 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.08851/1.959, allocations: 52.03 MB / 1.112 GB, free: 2.703 MB / 0.7013 GB
Notification: Performance of NFPackage.collectConstants: time 0.05571/2.015, allocations: 13.99 MB / 1.126 GB, free: 12.95 MB / 0.7169 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.1101/2.125, allocations: 35.45 MB / 1.161 GB, free: 124 kB / 0.7325 GB
Notification: Performance of NFScalarize.scalarize: time 0.04662/2.172, allocations: 24.02 MB / 1.184 GB, free: 10.68 MB / 0.7638 GB
Notification: Performance of NFVerifyModel.verify: time 0.07637/2.248, allocations: 40.58 MB / 1.224 GB, free: 2.809 MB / 0.795 GB
Notification: Performance of NFConvertDAE.convert: time 0.8475/3.096, allocations: 159.5 MB / 1.379 GB, free: 146.4 MB / 0.8577 GB
Notification: Performance of FrontEnd - DAE generated: time 6.973e-06/3.096, allocations: 4.328 kB / 1.379 GB, free: 146.4 MB / 0.8577 GB
Notification: Performance of FrontEnd: time 1.543e-06/3.096, allocations: 0 / 1.379 GB, free: 146.4 MB / 0.8577 GB
Notification: Performance of Transformations before backend: time 0.004024/3.1, allocations: 0 / 1.379 GB, free: 146.4 MB / 0.8577 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.2595/3.359, allocations: 71.73 MB / 1.449 GB, free: 114.5 MB / 0.8577 GB
Notification: Performance of prepare preOptimizeDAE: time 3.96e-05/3.359, allocations: 11.92 kB / 1.449 GB, free: 114.5 MB / 0.8577 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.08331/3.442, allocations: 11.93 MB / 1.461 GB, free: 109.8 MB / 0.8577 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.1079/3.55, allocations: 42.62 MB / 1.503 GB, free: 82.75 MB / 0.8577 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005883/3.556, allocations: 9.237 MB / 1.512 GB, free: 72.18 MB / 0.8577 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.03826/3.594, allocations: 4.593 MB / 1.516 GB, free: 67.59 MB / 0.8577 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.6378/4.232, allocations: 112.9 MB / 1.627 GB, free: 282.4 MB / 0.8733 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.002541/4.235, allocations: 27.84 kB / 1.627 GB, free: 282.4 MB / 0.8733 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.03334/4.268, allocations: 1.759 MB / 1.628 GB, free: 282.4 MB / 0.8733 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001379/4.27, allocations: 1.061 MB / 1.629 GB, free: 282.4 MB / 0.8733 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.3014/4.571, allocations: 153.9 MB / 1.78 GB, free: 197.4 MB / 0.8733 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.222/5.793, allocations: 438.7 MB / 2.208 GB, free: 137.9 MB / 0.8733 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.428/8.221, allocations: 0.6704 GB / 2.878 GB, free: 202.6 MB / 0.8733 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.09263/8.313, allocations: 60.08 MB / 2.937 GB, free: 157.8 MB / 0.8733 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.8515/9.165, allocations: 270 MB / 3.201 GB, free: 219.9 MB / 0.8733 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002063/9.165, allocations: 345.1 kB / 3.201 GB, free: 219.7 MB / 0.8733 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.08975/9.255, allocations: 29.34 MB / 3.23 GB, free: 209.4 MB / 0.8733 GB
Notification: Performance of pre-optimization done (n=2985): time 0.000135/9.255, allocations: 0 / 3.23 GB, free: 209.4 MB / 0.8733 GB
Notification: Performance of matching and sorting (n=3387): time 2.298/11.55, allocations: 423.8 MB / 3.644 GB, free: 136.5 MB / 0.8733 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002628/11.55, allocations: 449.3 kB / 3.644 GB, free: 136 MB / 0.8733 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.05469/11.61, allocations: 32.26 MB / 3.676 GB, free: 104.2 MB / 0.8733 GB
Notification: Performance of collectPreVariables (initialization): time 0.01814/11.63, allocations: 0.572 MB / 3.676 GB, free: 103.7 MB / 0.8733 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01725/11.64, allocations: 21.73 MB / 3.697 GB, free: 81.96 MB / 0.8733 GB
Notification: Performance of collectInitialBindings (initialization): time 0.02431/11.67, allocations: 12.42 MB / 3.709 GB, free: 69.7 MB / 0.8733 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.05601/11.72, allocations: 9.922 MB / 3.719 GB, free: 59.75 MB / 0.8733 GB
Notification: Performance of setup shared object (initialization): time 4.278e-05/11.72, allocations: 305.1 kB / 3.719 GB, free: 59.45 MB / 0.8733 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.4585/12.18, allocations: 39.05 MB / 3.758 GB, free: 244.1 MB / 0.8733 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0771/12.26, allocations: 53.24 MB / 3.81 GB, free: 222.5 MB / 0.8733 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.1466/12.41, allocations: 96.37 MB / 3.904 GB, free: 168 MB / 0.8733 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0006601/12.41, allocations: 128.1 kB / 3.904 GB, free: 168 MB / 0.8733 GB
Notification: Performance of matching and sorting (n=5667) (initialization): time 1.611/14.02, allocations: 257.3 MB / 4.155 GB, free: 201.3 MB / 0.8733 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0003289/14.02, allocations: 197.6 kB / 4.155 GB, free: 201.3 MB / 0.8733 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0007366/14.02, allocations: 446.3 kB / 4.156 GB, free: 201.3 MB / 0.8733 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.1751/14.19, allocations: 73.73 MB / 4.228 GB, free: 168.6 MB / 0.8733 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.052/14.25, allocations: 11.18 MB / 4.239 GB, free: 164.9 MB / 0.8733 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.8883/15.13, allocations: 314.2 MB / 4.545 GB, free: 157.6 MB / 0.8733 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.05351/15.19, allocations: 2.473 MB / 4.548 GB, free: 156.9 MB / 0.8733 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01696/15.21, allocations: 2.804 MB / 4.551 GB, free: 156.6 MB / 0.8733 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2031
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5523):
 * Single equations (assignments): 5514
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.05269/15.26, allocations: 18.34 MB / 4.568 GB, free: 146.6 MB / 0.8733 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02124/15.28, allocations: 3.321 MB / 4.572 GB, free: 146.6 MB / 0.8733 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 1.225/16.5, allocations: 152.4 MB / 4.721 GB, free: 187.7 MB / 0.8733 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003459/16.5, allocations: 359.3 kB / 4.721 GB, free: 187.7 MB / 0.8733 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0004005/16.5, allocations: 56.12 kB / 4.721 GB, free: 187.7 MB / 0.8733 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0009787/16.51, allocations: 184.5 kB / 4.721 GB, free: 187.7 MB / 0.8733 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.8951/17.4, allocations: 239 MB / 4.955 GB, free: 85.62 MB / 0.8733 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0003849/17.4, allocations: 8 kB / 4.955 GB, free: 85.62 MB / 0.8733 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04091/17.44, allocations: 7.251 MB / 4.962 GB, free: 78.36 MB / 0.8733 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.09161/17.53, allocations: 39.76 MB / 5 GB, free: 38.86 MB / 0.8733 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01264/17.55, allocations: 1.452 MB / 5.002 GB, free: 37.41 MB / 0.8733 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.7343/18.28, allocations: 158.7 MB / 5.157 GB, free: 171.3 MB / 0.8733 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 9.097e-06/18.28, allocations: 15.84 kB / 5.157 GB, free: 171.3 MB / 0.8733 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 1.205/19.49, allocations: 200.4 MB / 5.353 GB, free: 175.8 MB / 0.8733 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.03727/19.52, allocations: 11.55 MB / 5.364 GB, free: 175.8 MB / 0.8733 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01592/19.54, allocations: 0.9194 MB / 5.365 GB, free: 175.8 MB / 0.8733 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.04228/19.58, allocations: 1.542 MB / 5.366 GB, free: 175.8 MB / 0.8733 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.02341/19.6, allocations: 4.688 MB / 5.371 GB, free: 175.7 MB / 0.8733 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01149/19.62, allocations: 1.378 MB / 5.372 GB, free: 175.7 MB / 0.8733 GB
Notification: Performance of sorting global known variables: time 0.03785/19.65, allocations: 22.46 MB / 5.394 GB, free: 175 MB / 0.8733 GB
Notification: Performance of sort global known variables: time 1.8e-07/19.65, allocations: 0 / 5.394 GB, free: 175 MB / 0.8733 GB
Notification: Performance of remove unused functions: time 0.09401/19.75, allocations: 20.25 MB / 5.414 GB, free: 173.5 MB / 0.8733 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3702):
 * Single equations (assignments): 3693
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.03236/19.78, allocations: 10.81 MB / 5.424 GB, free: 171.4 MB / 0.8733 GB
Notification: Performance of simCode: created initialization part: time 0.2058/19.99, allocations: 85.3 MB / 5.508 GB, free: 139.7 MB / 0.8733 GB
Notification: Performance of simCode: created event and clocks part: time 1.275e-05/19.99, allocations: 1.844 kB / 5.508 GB, free: 139.7 MB / 0.8733 GB
Notification: Performance of simCode: created simulation system equations: time 0.1321/20.12, allocations: 54.54 MB / 5.561 GB, free: 94.39 MB / 0.8733 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.05662/20.17, allocations: 7.82 MB / 5.569 GB, free: 88.16 MB / 0.8733 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.6273/20.8, allocations: 123.4 MB / 5.689 GB, free: 177.6 MB / 0.8733 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.05677/20.86, allocations: 30.6 MB / 5.719 GB, free: 175.3 MB / 0.8733 GB
Notification: Performance of simCode: alias equations: time 0.05105/20.91, allocations: 15.63 MB / 5.734 GB, free: 174.2 MB / 0.8733 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0212/20.93, allocations: 4.321 MB / 5.738 GB, free: 174.2 MB / 0.8733 GB
Notification: Performance of SimCode: time 1.383e-06/20.93, allocations: 0 / 5.738 GB, free: 174.2 MB / 0.8733 GB
Notification: Performance of Templates: time 2.525/23.46, allocations: 1.036 GB / 6.775 GB, free: 261.3 MB / 0.967 GB
"
[Timeout remaining time 637]
make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 69.14114625100046]
Failed to read output from testmodel.py, exit status != 0:
23.46450549410656 23.475119751 20.376823625
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f6a6be52ce0>