Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.001726/0.001726, allocations: 107.5 kB / 16.45 MB, free: 6.504 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001513/0.001513, allocations: 191.7 kB / 19.41 MB, free: 3.68 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.477/1.477, allocations: 225.6 MB / 247.8 MB, free: 13.95 MB / 206.1 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo): time 0.07489/0.07489, allocations: 12.42 MB / 315.1 MB, free: 14.13 MB / 254.1 MB " [Timeout remaining time 180] Using package BioChem with version 1.1.2 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo) Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo) Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo) Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo) Running command: "" <> buildModelFMU(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,fileNamePrefix="BioChem_BioChem_Examples_GlucoseInsulinModel_GlucoseInsulinModel",fmuType="me",version="2.0",platforms={"static"}) "" <> buildModelFMU(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,fileNamePrefix="BioChem_BioChem_Examples_GlucoseInsulinModel_GlucoseInsulinModel",fmuType="me",version="2.0",platforms={"static"}) [Timeout 660] "Warning: Ignoring unknown experiment annotation option: Algorithm = \"dassl\" Notification: Performance of FrontEnd - loaded program: time 0.0019/0.0019, allocations: 64.48 kB / 438.6 MB, free: 9.055 MB / 302.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1043/0.1062, allocations: 54.92 MB / 493.5 MB, free: 2.066 MB / 350.1 MB Notification: Performance of NFInst.instantiate(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel): time 0.01285/0.119, allocations: 8.754 MB / 0.4905 GB, free: 9.285 MB / 366.1 MB Notification: Performance of NFInst.instExpressions: time 0.006173/0.1252, allocations: 2.375 MB / 0.4928 GB, free: 6.902 MB / 366.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.001387/0.1266, allocations: 120 kB / 0.493 GB, free: 6.785 MB / 366.1 MB Notification: Performance of NFTyping.typeComponents: time 0.00109/0.1277, allocations: 377 kB / 0.4933 GB, free: 6.414 MB / 366.1 MB Notification: Performance of NFTyping.typeBindings: time 0.001577/0.1292, allocations: 0.5301 MB / 0.4938 GB, free: 5.879 MB / 366.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.001127/0.1304, allocations: 0.5736 MB / 0.4944 GB, free: 5.305 MB / 366.1 MB Notification: Performance of NFFlatten.flatten: time 0.002626/0.133, allocations: 2.332 MB / 0.4967 GB, free: 2.965 MB / 366.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.001373/0.1344, allocations: 0.8658 MB / 0.4975 GB, free: 2.047 MB / 366.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.001207/0.1356, allocations: 0.9501 MB / 0.4984 GB, free: 1.094 MB / 366.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.001325/0.1369, allocations: 1.077 MB / 0.4995 GB, free: 12 kB / 366.1 MB Notification: Performance of NFPackage.collectConstants: time 0.0004251/0.1373, allocations: 316 kB / 0.4998 GB, free: 15.7 MB / 382.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.000402/0.1377, allocations: 320 kB / 0.5001 GB, free: 15.39 MB / 382.1 MB Notification: Performance of NFScalarize.scalarize: time 0.000494/0.1382, allocations: 0.5842 MB / 0.5007 GB, free: 14.8 MB / 382.1 MB Notification: Performance of NFVerifyModel.verify: time 0.001192/0.1394, allocations: 1.26 MB / 0.5019 GB, free: 13.54 MB / 382.1 MB Notification: Performance of NFConvertDAE.convert: time 0.003687/0.1431, allocations: 3.433 MB / 0.5053 GB, free: 10.09 MB / 382.1 MB Notification: Performance of FrontEnd - DAE generated: time 5.741e-06/0.1431, allocations: 3.938 kB / 0.5053 GB, free: 10.09 MB / 382.1 MB Notification: Performance of FrontEnd: time 1.934e-06/0.1431, allocations: 0 / 0.5053 GB, free: 10.09 MB / 382.1 MB Notification: Performance of Transformations before backend: time 9.25e-05/0.1432, allocations: 0 / 0.5053 GB, free: 10.09 MB / 382.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 687 * Number of variables: 687 Notification: Performance of Generate backend data structure: time 0.004483/0.1477, allocations: 2.393 MB / 0.5076 GB, free: 7.637 MB / 382.1 MB Notification: Performance of prepare preOptimizeDAE: time 3.985e-05/0.1477, allocations: 8.031 kB / 0.5076 GB, free: 7.629 MB / 382.1 MB Notification: Performance of preOpt introduceOutputAliases (simulation): time 0.0004207/0.1481, allocations: 367.7 kB / 0.508 GB, free: 7.262 MB / 382.1 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003437/0.1485, allocations: 247.4 kB / 0.5082 GB, free: 7.02 MB / 382.1 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004522/0.1489, allocations: 425.3 kB / 0.5086 GB, free: 6.566 MB / 382.1 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002669/0.1492, allocations: 261.4 kB / 0.5088 GB, free: 6.297 MB / 382.1 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003529/0.1496, allocations: 288 kB / 0.5091 GB, free: 6.016 MB / 382.1 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.004021/0.1536, allocations: 2.39 MB / 0.5115 GB, free: 3.539 MB / 382.1 MB Notification: Performance of preOpt findStateOrder (simulation): time 6.585e-05/0.1536, allocations: 11.95 kB / 0.5115 GB, free: 3.527 MB / 382.1 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001871/0.1538, allocations: 108 kB / 0.5116 GB, free: 3.422 MB / 382.1 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.255e-05/0.1539, allocations: 68 kB / 0.5116 GB, free: 3.355 MB / 382.1 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003246/0.1571, allocations: 1.683 MB / 0.5133 GB, free: 1.66 MB / 382.1 MB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.2282/0.3854, allocations: 8.37 MB / 0.5215 GB, free: 25.94 MB / 382.1 MB Notification: Performance of preOpt comSubExp (simulation): time 0.002293/0.3877, allocations: 1.543 MB / 0.523 GB, free: 25.42 MB / 382.1 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.0009373/0.3886, allocations: 0.5096 MB / 0.5235 GB, free: 25.37 MB / 382.1 MB Notification: Performance of preOpt evalFunc (simulation): time 6.46e-05/0.3887, allocations: 21.39 kB / 0.5235 GB, free: 25.37 MB / 382.1 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.941e-05/0.3887, allocations: 55.05 kB / 0.5235 GB, free: 25.33 MB / 382.1 MB Notification: Performance of pre-optimization done (n=139): time 3.667e-06/0.3887, allocations: 4.281 kB / 0.5235 GB, free: 25.33 MB / 382.1 MB Notification: Performance of matching and sorting (n=171): time 0.02507/0.4138, allocations: 9.229 MB / 0.5325 GB, free: 22 MB / 382.1 MB Notification: Performance of inlineWhenForInitialization (initialization): time 7.245e-05/0.4139, allocations: 172.7 kB / 0.5327 GB, free: 21.82 MB / 382.1 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0006522/0.4145, allocations: 493.5 kB / 0.5332 GB, free: 21.57 MB / 382.1 MB Notification: Performance of collectPreVariables (initialization): time 0.0001045/0.4146, allocations: 55.77 kB / 0.5332 GB, free: 21.52 MB / 382.1 MB Notification: Performance of collectInitialEqns (initialization): time 0.0005235/0.4151, allocations: 0.9794 MB / 0.5342 GB, free: 20.86 MB / 382.1 MB Notification: Performance of collectInitialBindings (initialization): time 0.0004566/0.4156, allocations: 0.658 MB / 0.5348 GB, free: 20.35 MB / 382.1 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004616/0.4161, allocations: 356 kB / 0.5352 GB, free: 20.17 MB / 382.1 MB Notification: Performance of setup shared object (initialization): time 6.658e-05/0.4161, allocations: 327.8 kB / 0.5355 GB, free: 19.85 MB / 382.1 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001145/0.4173, allocations: 0.6639 MB / 0.5361 GB, free: 19.58 MB / 382.1 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001217/0.4185, allocations: 1.188 MB / 0.5373 GB, free: 18.58 MB / 382.1 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.01489/0.4334, allocations: 4.732 MB / 0.5419 GB, free: 15.89 MB / 382.1 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.432e-05/0.4334, allocations: 5.531 kB / 0.5419 GB, free: 15.89 MB / 382.1 MB Notification: Performance of matching and sorting (n=291) (initialization): time 0.003153/0.4366, allocations: 2.123 MB / 0.544 GB, free: 14.83 MB / 382.1 MB Notification: Performance of prepare postOptimizeDAE: time 2.823e-05/0.4366, allocations: 11.88 kB / 0.544 GB, free: 14.83 MB / 382.1 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.988e-05/0.4366, allocations: 19.78 kB / 0.544 GB, free: 14.83 MB / 382.1 MB Notification: Performance of postOpt tearingSystem (initialization): time 3.703e-05/0.4366, allocations: 32.41 kB / 0.5441 GB, free: 14.83 MB / 382.1 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.002221/0.4389, allocations: 0.6368 MB / 0.5447 GB, free: 14.68 MB / 382.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.75e-05/0.4389, allocations: 47.55 kB / 0.5447 GB, free: 14.67 MB / 382.1 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0009281/0.4398, allocations: 83.53 kB / 0.5448 GB, free: 14.62 MB / 382.1 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.897e-05/0.4399, allocations: 91.19 kB / 0.5449 GB, free: 14.6 MB / 382.1 MB Warning: Assuming fixed start value for the following 41 variables: V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real adiposeTissue1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GlucoseRenalExcretion.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GlucoseRenalExcretion.E.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real UtilizationMuscleTissue.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real UtilizationMuscleTissue.U_idm.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real GastroIntestinalTract.GlucoseIntake.c:VARIABLE(min = 0.0 start = 78000.0 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real TissueGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real PlasmaGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real PlasmaInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real LiverInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real EndogenousGlucoseProduction.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real EndogenousGlucoseProduction.I_po.c:VARIABLE(min = 0.0 start = 3.6 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real BetaCell.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real BetaCell.Y.c:VARIABLE(min = 0.0 start = 0.0 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) \"Compartment volume\" type: Real adiposeTissue1.adipocyte1.IR.c:VARIABLE(min = 0.0 start = 2.34e12 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.IRS1.c:VARIABLE(min = 0.0 start = 1.61e10 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.PKB.c:VARIABLE(min = 0.0 start = 1.68e7 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c:VARIABLE(min = 0.0 start = 5.8e8 unit = \"mol/l\" fixed = true stateSelect=StateSelect.prefer ) \"Current concentration of substance (mM)\" type: Real adiposeTissue1.adipocyte1.IR_insulin.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.GlucoseUtilization.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.PKB_P.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real adiposeTissue1.adipocyte1.IRS1_P.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real BetaCell.G_p.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.End.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.I_d.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real EndogenousGlucoseProduction.I_1.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real LiverInsulin.Deg.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real LiverInsulin.I_l.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real UtilizationMuscleTissue.UtilizationReaction.X:VARIABLE(min = 0.0 unit = \"mol/l\" fixed = true ) type: Real PlasmaInsulin.Deg.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real PlasmaInsulin.I_p.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real PlasmaGlucose.U_ii.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real TissueGlucose.G_t.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.End.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_sto1.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_gut.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real GastroIntestinalTract.Q_sto2.n:VARIABLE(min = 0.0 unit = \"mol\" fixed = true stateSelect=StateSelect.prefer ) \"Number of moles of substance in pool (mol)\" type: Real Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 86 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (291): * Single equations (assignments): 291 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001036/0.441, allocations: 0.6094 MB / 0.5455 GB, free: 14.17 MB / 382.1 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002307/0.4412, allocations: 102.8 kB / 0.5456 GB, free: 14.12 MB / 382.1 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002096/0.4433, allocations: 1.431 MB / 0.547 GB, free: 13.3 MB / 382.1 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.205e-05/0.4433, allocations: 17.44 kB / 0.547 GB, free: 13.3 MB / 382.1 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 8.025e-06/0.4433, allocations: 3.469 kB / 0.547 GB, free: 13.3 MB / 382.1 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.32e-05/0.4433, allocations: 7.969 kB / 0.547 GB, free: 13.29 MB / 382.1 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.005608/0.4489, allocations: 3.58 MB / 0.5505 GB, free: 10.29 MB / 382.1 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.586e-06/0.4489, allocations: 4.062 kB / 0.5505 GB, free: 10.29 MB / 382.1 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.002207/0.4511, allocations: 479.4 kB / 0.551 GB, free: 9.82 MB / 382.1 MB Notification: Performance of postOpt tearingSystem (simulation): time 1.251e-05/0.4512, allocations: 8 kB / 0.551 GB, free: 9.812 MB / 382.1 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001117/0.4513, allocations: 59.95 kB / 0.551 GB, free: 9.754 MB / 382.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 8.295e-06/0.4513, allocations: 8 kB / 0.551 GB, free: 9.746 MB / 382.1 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.826e-06/0.4513, allocations: 4 kB / 0.551 GB, free: 9.742 MB / 382.1 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002932/0.4542, allocations: 2.519 MB / 0.5535 GB, free: 7.199 MB / 382.1 MB Notification: Performance of postOpt removeConstants (simulation): time 0.0002295/0.4544, allocations: 152.5 kB / 0.5536 GB, free: 7.031 MB / 382.1 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001438/0.4546, allocations: 48 kB / 0.5537 GB, free: 6.984 MB / 382.1 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000717/0.4553, allocations: 39.98 kB / 0.5537 GB, free: 6.945 MB / 382.1 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001626/0.4555, allocations: 113 kB / 0.5538 GB, free: 6.836 MB / 382.1 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.546e-05/0.4555, allocations: 59.95 kB / 0.5539 GB, free: 6.777 MB / 382.1 MB Notification: Performance of sorting global known variables: time 0.0002749/0.4558, allocations: 298.9 kB / 0.5542 GB, free: 6.484 MB / 382.1 MB Notification: Performance of sort global known variables: time 7e-08/0.4558, allocations: 7.938 kB / 0.5542 GB, free: 6.477 MB / 382.1 MB Notification: Performance of remove unused functions: time 0.001568/0.4574, allocations: 424 kB / 0.5546 GB, free: 6.062 MB / 382.1 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 7 * Number of states: 41 (GastroIntestinalTract.V,GastroIntestinalTract.Q_sto2.n,GastroIntestinalTract.Q_gut.n,GastroIntestinalTract.Q_sto1.n,GastroIntestinalTract.GlucoseIntake.c,GastroIntestinalTract.End.n,TissueGlucose.V,TissueGlucose.G_t.n,PlasmaGlucose.V,PlasmaGlucose.U_ii.n,PlasmaInsulin.V,PlasmaInsulin.I_p.n,PlasmaInsulin.Deg.n,UtilizationMuscleTissue.UtilizationReaction.X,LiverInsulin.V,LiverInsulin.I_l.n,LiverInsulin.Deg.n,EndogenousGlucoseProduction.V,EndogenousGlucoseProduction.I_1.n,EndogenousGlucoseProduction.I_d.n,EndogenousGlucoseProduction.End.n,EndogenousGlucoseProduction.I_po.c,BetaCell.V,BetaCell.G_p.n,BetaCell.Y.c,adiposeTissue1.adipocyte1.V,adiposeTissue1.adipocyte1.IR.c,adiposeTissue1.adipocyte1.IRS1.c,adiposeTissue1.adipocyte1.IRS1_P.n,adiposeTissue1.adipocyte1.PKB.c,adiposeTissue1.adipocyte1.PKB_P.n,adiposeTissue1.adipocyte1.GlucoseUtilization.n,adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n,adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c,adiposeTissue1.adipocyte1.IR_insulin.n,V,adiposeTissue1.V,UtilizationMuscleTissue.V,UtilizationMuscleTissue.U_idm.n,GlucoseRenalExcretion.V,GlucoseRenalExcretion.E.n) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (173): * Single equations (assignments): 173 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.003169/0.4605, allocations: 3.118 MB / 0.5576 GB, free: 2.918 MB / 382.1 MB Notification: Performance of simCode: created initialization part: time 0.002576/0.4631, allocations: 1.547 MB / 0.5591 GB, free: 1.375 MB / 382.1 MB Notification: Performance of simCode: created event and clocks part: time 5.52e-06/0.4631, allocations: 0 / 0.5591 GB, free: 1.375 MB / 382.1 MB Notification: Performance of simCode: created simulation system equations: time 0.0009704/0.4641, allocations: 0.7217 MB / 0.5599 GB, free: 0.6523 MB / 382.1 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.00127/0.4654, allocations: 224.6 kB / 0.5601 GB, free: 452 kB / 382.1 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0226/0.488, allocations: 13.14 MB / 0.5729 GB, free: 2.5 MB / 398.1 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.001261/0.4892, allocations: 1.37 MB / 0.5742 GB, free: 1.094 MB / 398.1 MB Notification: Performance of simCode: alias equations: time 0.0008667/0.4901, allocations: 157.5 kB / 0.5744 GB, free: 0.9375 MB / 398.1 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.001129/0.4912, allocations: 0.7843 MB / 0.5752 GB, free: 156 kB / 398.1 MB Notification: Performance of SimCode: time 9.92e-07/0.4912, allocations: 0 / 0.5752 GB, free: 156 kB / 398.1 MB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.07226/0.5635, allocations: 29.16 MB / 0.6036 GB, free: 3.266 MB / 430.1 MB Notification: Performance of buildModelFMU: Generate platform static: time 11.16/11.72, allocations: 11.81 kB / 0.6036 GB, free: 3.258 MB / 430.1 MB " [Timeout remaining time 648] (rm -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; mkfifo BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; head -c 1048576 < BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe >> ../files/BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.sim & /home/hudson/saved_omc/OMSimulator/install/bin/OMSimulator --tempDir=temp_BioChem_BioChem_Examples_GlucoseInsulinModel_GlucoseInsulinModel_fmu --startTime=0 --stopTime=420 --stepSize=420 --timeout=50 --tolerance=1e-06 BioChem_BioChem_Examples_GlucoseInsulinModel_GlucoseInsulinModel.fmu > BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe 2>&1) [Timeout 52.5] [Calling os._exit(0), Time elapsed: 14.364781711716205] Failed to read output from testmodel.py, exit status != 0: 11.81100594997406 11.826877916 11.680779396 Calling exit ...