Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001612/0.001612, allocations: 114.8 kB / 17.16 MB, free: 5.895 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001968/0.001968, allocations: 210.2 kB / 20.13 MB, free: 2.949 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.497/1.497, allocations: 230.6 MB / 253.5 MB, free: 15.12 MB / 206.1 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1398/0.1398, allocations: 23.88 MB / 333.4 MB, free: 1.191 MB / 254.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: "" <> buildModelFMU(Chemical.Obsolete.Examples.Hemoglobin.Joels57,fileNamePrefix="Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57",fmuType="cs",version="2.0",platforms={"static"}) "" <> buildModelFMU(Chemical.Obsolete.Examples.Hemoglobin.Joels57,fileNamePrefix="Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57",fmuType="cs",version="2.0",platforms={"static"}) [Timeout 660] Thread is still alive. "Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.002178/0.002178, allocations: 64.62 kB / 466.7 MB, free: 30.73 MB / 350.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1104/0.1125, allocations: 59.84 MB / 0.5142 GB, free: 12.92 MB / 382.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.6197/0.7322, allocations: 83.15 MB / 0.5954 GB, free: 328 kB / 446.1 MB Notification: Performance of NFInst.instExpressions: time 0.2762/1.008, allocations: 217.7 MB / 0.808 GB, free: 15.17 MB / 0.6075 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.01848/1.027, allocations: 230.1 kB / 0.8082 GB, free: 14.95 MB / 0.6075 GB Notification: Performance of NFTyping.typeComponents: time 0.01691/1.044, allocations: 4.913 MB / 0.813 GB, free: 9.996 MB / 0.6075 GB Notification: Performance of NFTyping.typeBindings: time 0.438/1.482, allocations: 17.76 MB / 0.8304 GB, free: 8.797 MB / 0.6075 GB Notification: Performance of NFTyping.typeClassSections: time 0.08841/1.57, allocations: 32.38 MB / 0.862 GB, free: 8.629 MB / 0.6075 GB Notification: Performance of NFFlatten.flatten: time 0.09043/1.661, allocations: 89.24 MB / 0.9491 GB, free: 14.14 MB / 0.6544 GB Notification: Performance of NFFlatten.resolveConnections: time 0.09831/1.759, allocations: 61.24 MB / 1.009 GB, free: 3.344 MB / 0.7013 GB Notification: Performance of NFEvalConstants.evaluate: time 0.09106/1.85, allocations: 56.51 MB / 1.064 GB, free: 11.61 MB / 0.7638 GB Notification: Performance of NFSimplifyModel.simplify: time 0.8515/2.701, allocations: 52.02 MB / 1.115 GB, free: 75.72 MB / 0.7795 GB Notification: Performance of NFPackage.collectConstants: time 0.04015/2.742, allocations: 12.2 MB / 1.127 GB, free: 75.72 MB / 0.7795 GB Notification: Performance of NFFlatten.collectFunctions: time 0.1285/2.87, allocations: 35.44 MB / 1.161 GB, free: 75.72 MB / 0.7795 GB Notification: Performance of NFScalarize.scalarize: time 0.05135/2.921, allocations: 24.03 MB / 1.185 GB, free: 75.72 MB / 0.7795 GB Notification: Performance of NFVerifyModel.verify: time 0.08915/3.011, allocations: 40.57 MB / 1.225 GB, free: 56.54 MB / 0.7795 GB Notification: Performance of NFConvertDAE.convert: time 0.2387/3.249, allocations: 159.5 MB / 1.38 GB, free: 15.23 MB / 0.8733 GB Notification: Performance of FrontEnd - DAE generated: time 7.504e-06/3.249, allocations: 0 / 1.38 GB, free: 15.23 MB / 0.8733 GB Notification: Performance of FrontEnd: time 2.184e-06/3.249, allocations: 0 / 1.38 GB, free: 15.23 MB / 0.8733 GB Notification: Performance of Transformations before backend: time 0.003207/3.252, allocations: 0 / 1.38 GB, free: 15.23 MB / 0.8733 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 11424 * Number of variables: 11424 Notification: Performance of Generate backend data structure: time 0.8818/4.134, allocations: 71.8 MB / 1.45 GB, free: 317.3 MB / 0.8735 GB Notification: Performance of prepare preOptimizeDAE: time 4.095e-05/4.134, allocations: 11.84 kB / 1.45 GB, free: 317.3 MB / 0.8735 GB Notification: Performance of preOpt introduceOutputRealDerivatives (simulation): time 0.0007704/4.135, allocations: 1.135 MB / 1.452 GB, free: 317.3 MB / 0.8735 GB Notification: Performance of preOpt introduceOutputAliases (simulation): time 0.0299/4.165, allocations: 5.954 MB / 1.457 GB, free: 313 MB / 0.8735 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.07779/4.243, allocations: 11.94 MB / 1.469 GB, free: 307.7 MB / 0.8735 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.09257/4.335, allocations: 41.27 MB / 1.509 GB, free: 276.1 MB / 0.8735 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.005719/4.341, allocations: 6.435 MB / 1.516 GB, free: 269 MB / 0.8735 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.03319/4.374, allocations: 4.597 MB / 1.52 GB, free: 264.4 MB / 0.8735 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.2638/4.638, allocations: 112.8 MB / 1.63 GB, free: 151 MB / 0.8735 GB Notification: Performance of preOpt findStateOrder (simulation): time 0.002005/4.64, allocations: 31.69 kB / 1.63 GB, free: 150.9 MB / 0.8735 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.02677/4.667, allocations: 1.758 MB / 1.632 GB, free: 149.2 MB / 0.8735 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0006289/4.667, allocations: 1.059 MB / 1.633 GB, free: 148.1 MB / 0.8735 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.6951/5.363, allocations: 153.7 MB / 1.783 GB, free: 280.5 MB / 0.8735 GB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 1.267/6.63, allocations: 436.4 MB / 2.209 GB, free: 210.4 MB / 0.8735 GB Notification: Performance of preOpt comSubExp (simulation): time 2.736/9.365, allocations: 0.8136 GB / 3.023 GB, free: 176.8 MB / 0.8735 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.1071/9.473, allocations: 60.08 MB / 3.082 GB, free: 131.8 MB / 0.8735 GB Notification: Performance of preOpt evalFunc (simulation): time 1.014/10.49, allocations: 298.5 MB / 3.373 GB, free: 191.9 MB / 0.8735 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002239/10.49, allocations: 340.4 kB / 3.373 GB, free: 191.7 MB / 0.8735 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.09921/10.59, allocations: 29.34 MB / 3.402 GB, free: 175.9 MB / 0.8735 GB Notification: Performance of pre-optimization done (n=2985): time 0.0002085/10.59, allocations: 0 / 3.402 GB, free: 175.9 MB / 0.8735 GB Notification: Performance of matching and sorting (n=3387): time 2.532/13.12, allocations: 424.5 MB / 3.817 GB, free: 65.91 MB / 0.8735 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0002432/13.12, allocations: 449.3 kB / 3.817 GB, free: 65.44 MB / 0.8735 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.4787/13.6, allocations: 32.15 MB / 3.848 GB, free: 254.1 MB / 0.8735 GB Notification: Performance of collectPreVariables (initialization): time 0.01176/13.61, allocations: 0.5686 MB / 3.849 GB, free: 253.6 MB / 0.8735 GB Notification: Performance of collectInitialEqns (initialization): time 0.01993/13.63, allocations: 21.74 MB / 3.87 GB, free: 241.3 MB / 0.8735 GB Notification: Performance of collectInitialBindings (initialization): time 0.02439/13.65, allocations: 12.41 MB / 3.882 GB, free: 231.6 MB / 0.8735 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0511/13.7, allocations: 9.93 MB / 3.892 GB, free: 227.9 MB / 0.8735 GB Notification: Performance of setup shared object (initialization): time 5.593e-05/13.7, allocations: 305.1 kB / 3.892 GB, free: 227.6 MB / 0.8735 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0685/13.77, allocations: 38.99 MB / 3.93 GB, free: 211.8 MB / 0.8735 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0867/13.86, allocations: 53.19 MB / 3.982 GB, free: 178.5 MB / 0.8735 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.1566/14.02, allocations: 96.32 MB / 4.076 GB, free: 98.75 MB / 0.8735 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0005484/14.02, allocations: 128 kB / 4.076 GB, free: 98.63 MB / 0.8735 GB Notification: Performance of matching and sorting (n=5667) (initialization): time 1.82/15.84, allocations: 257.2 MB / 4.328 GB, free: 140.8 MB / 0.8735 GB Notification: Performance of prepare postOptimizeDAE: time 0.0003966/15.84, allocations: 198.5 kB / 4.328 GB, free: 140.6 MB / 0.8735 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0007816/15.84, allocations: 447.9 kB / 4.328 GB, free: 140.1 MB / 0.8735 GB Notification: Performance of postOpt tearingSystem (initialization): time 0.1875/16.03, allocations: 73.73 MB / 4.4 GB, free: 66.66 MB / 0.8735 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0658/16.09, allocations: 11.17 MB / 4.411 GB, free: 56.19 MB / 0.8735 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.042/17.13, allocations: 315.1 MB / 4.719 GB, free: 69.23 MB / 0.8735 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.05644/17.19, allocations: 2.477 MB / 4.721 GB, free: 66.75 MB / 0.8735 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0175/17.21, allocations: 2.799 MB / 4.724 GB, free: 63.95 MB / 0.8735 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 2031 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (5523): * Single equations (assignments): 5514 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 9 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 6 systems {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 3 systems {(1,3), (1,3), (1,3)} Notification: Performance of prepare postOptimizeDAE: time 0.04724/17.25, allocations: 18.34 MB / 4.742 GB, free: 46.02 MB / 0.8735 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.02312/17.28, allocations: 3.32 MB / 4.745 GB, free: 44.54 MB / 0.8735 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 1.304/18.58, allocations: 152.4 MB / 4.894 GB, free: 186.6 MB / 0.8735 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003127/18.58, allocations: 359.4 kB / 4.894 GB, free: 186.6 MB / 0.8735 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0004392/18.58, allocations: 53.44 kB / 4.894 GB, free: 186.6 MB / 0.8735 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.001151/18.58, allocations: 181.7 kB / 4.895 GB, free: 186.6 MB / 0.8735 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 1.369/19.95, allocations: 238 MB / 5.127 GB, free: 172.3 MB / 0.8735 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0004155/19.95, allocations: 11.53 kB / 5.127 GB, free: 172.3 MB / 0.8735 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.04295/20, allocations: 7.258 MB / 5.134 GB, free: 172 MB / 0.8735 GB Notification: Performance of postOpt tearingSystem (simulation): time 0.09786/20.09, allocations: 39.75 MB / 5.173 GB, free: 170.6 MB / 0.8735 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.01196/20.11, allocations: 1.447 MB / 5.174 GB, free: 170.6 MB / 0.8735 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.3377/20.44, allocations: 159.6 MB / 5.33 GB, free: 103.8 MB / 0.8735 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 9.388e-06/20.44, allocations: 24 kB / 5.33 GB, free: 103.8 MB / 0.8735 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 1.295/21.74, allocations: 200.4 MB / 5.526 GB, free: 155.1 MB / 0.8735 GB Notification: Performance of postOpt removeConstants (simulation): time 0.03228/21.77, allocations: 11.14 MB / 5.537 GB, free: 151.2 MB / 0.8735 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0176/21.79, allocations: 0.9164 MB / 5.538 GB, free: 150.6 MB / 0.8735 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.03988/21.83, allocations: 1.549 MB / 5.539 GB, free: 150.2 MB / 0.8735 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.02414/21.85, allocations: 4.549 MB / 5.544 GB, free: 149.5 MB / 0.8735 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01028/21.86, allocations: 1.382 MB / 5.545 GB, free: 149.2 MB / 0.8735 GB Notification: Performance of sorting global known variables: time 0.03814/21.9, allocations: 22.38 MB / 5.567 GB, free: 141 MB / 0.8735 GB Notification: Performance of sort global known variables: time 2.7e-07/21.9, allocations: 0 / 5.567 GB, free: 141 MB / 0.8735 GB Notification: Performance of remove unused functions: time 0.09342/21.99, allocations: 20.25 MB / 5.587 GB, free: 137.7 MB / 0.8735 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 45 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (3702): * Single equations (assignments): 3693 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 9 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 6 systems {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 3 systems {(1,3), (1,3), (1,3)} Notification: Performance of Backend phase and start with SimCode phase: time 1.315/23.31, allocations: 211.9 MB / 5.794 GB, free: 200.1 MB / 0.8892 GB Notification: Performance of simCode: created initialization part: time 0.2027/23.51, allocations: 85.25 MB / 5.877 GB, free: 175.2 MB / 0.8892 GB Notification: Performance of simCode: created event and clocks part: time 1.469e-05/23.51, allocations: 4.031 kB / 5.877 GB, free: 175.2 MB / 0.8892 GB Notification: Performance of simCode: created simulation system equations: time 0.1321/23.64, allocations: 54.52 MB / 5.93 GB, free: 153.6 MB / 0.8892 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.06971/23.71, allocations: 7.834 MB / 5.938 GB, free: 150.5 MB / 0.8892 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 4.649/28.36, allocations: 0.8504 GB / 6.788 GB, free: 224.1 MB / 0.9204 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.05916/28.42, allocations: 30.6 MB / 6.818 GB, free: 221.9 MB / 0.9204 GB Notification: Performance of simCode: alias equations: time 0.05854/28.48, allocations: 15.63 MB / 6.833 GB, free: 221.4 MB / 0.9204 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.05053/28.53, allocations: 22.84 MB / 6.856 GB, free: 215 MB / 0.9204 GB Notification: Performance of SimCode: time 1.203e-06/28.53, allocations: 0 / 6.856 GB, free: 215 MB / 0.9204 GB Notification: Performance of buildModelFMU: Generate the FMI files: time 3.235/31.77, allocations: 1.387 GB / 8.243 GB, free: 124.5 MB / 0.936 GB Error: Error building simulator. Build log: cmd: cd 'Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.fmutmp/sources/' && mkdir build_cmake_static && cd build_cmake_static && cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER='clang' .. && cmake --build . --parallel -j1 --target install && cd .. && rm -rf build_cmake_static -- The C compiler identification is Clang 14.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang - skipped -- Detecting C compile features -- Detecting C compile features - done -- FMI2 include directory: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/c/fmi -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Building for FMI platform linux64 -- Install directory: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.fmutmp/sources/../binaries/linux64 -- CVODE_DIRECTORY: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../lib/x86_64-linux-gnu/omc -- SUNDIALS_CVODE_LIBRARY: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_cvode.so -- SUNDIALS_NVECSERIAL_LIBRARY: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_nvecserial.so -- CVODE: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_nvecserial.so /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_cvode.so -- Not using FMI2_FUNCTION_PREFIX -- Installing dynamic dependencies from list: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_cvode.so;/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/x86_64-linux-gnu/omc/libsundials_nvecserial.so -- Configuring done -- Generating done -- Build files have been written to: /var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.fmutmp/sources/build_cmake_static [ 0%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/external_solvers/dgemm.c.o [ 1%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/external_solvers/dger.c.o [ 2%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/external_solvers/dgesv.c.o 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CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part19.c.o [ 87%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part20.c.o [ 88%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_08bnd_part21.c.o [ 88%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_09alg.c.o [ 89%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_10asr.c.o [ 90%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_11mix.c.o [ 91%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_12jac.c.o [ 92%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_13opt.c.o [ 92%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_14lnz.c.o [ 93%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_15syn.c.o [ 94%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_16dae.c.o [ 95%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_17inl.c.o [ 96%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_18spd.c.o [ 96%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_FMU.c.o [ 97%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_functions.c.o [ 98%] Building C object CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_init_fmu.c.o gmake[2]: *** [CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/build.make:1812: CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57_init_fmu.c.o] Interrupt gmake[1]: *** [CMakeFiles/Makefile2:84: CMakeFiles/Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57.dir/all] Interrupt gmake: *** [Makefile:136: all] Interrupt " [Timeout remaining time 0] Timeout error for cmd: "" <> buildModelFMU(Chemical.Obsolete.Examples.Hemoglobin.Joels57,fileNamePrefix="Chemical_master_Chemical_Obsolete_Examples_Hemoglobin_Joels57",fmuType="cs",version="2.0",platforms={"static"}) Failed to read output from testmodel.py, exit status != 0: Traceback (most recent call last): File "/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/./testmodel.py", line 410, in res=sendExpressionTimeout(omc, cmd, conf["ulimitOmc"]) File "/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/./testmodel.py", line 144, in sendExpressionTimeout raise TimeoutError(res[1]) __main__.TimeoutError During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelicaLibraryTesting/./testmodel.py", line 424, in writeResultAndExit(0, omc, omc_new) NameError: name 'omc' is not defined