Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001575/0.001575, allocations: 117.2 kB / 17.13 MB, free: 5.945 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001699/0.001699, allocations: 210.5 kB / 20.09 MB, free: 2.996 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.482/1.482, allocations: 230.6 MB / 253.5 MB, free: 15.11 MB / 206.1 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1392/0.1392, allocations: 23.9 MB / 333.4 MB, free: 1.242 MB / 254.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation") translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation") [Timeout 660] "Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.002039/0.002039, allocations: 65.47 kB / 467.3 MB, free: 30.38 MB / 350.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.09678/0.09882, allocations: 59.84 MB / 0.5147 GB, free: 12.35 MB / 382.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation): time 0.05663/0.1554, allocations: 42.99 MB / 0.5567 GB, free: 1.34 MB / 414.1 MB Notification: Performance of NFInst.instExpressions: time 0.31/0.4655, allocations: 73.02 MB / 0.628 GB, free: 17.09 MB / 446.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.003472/0.4689, allocations: 84.53 kB / 0.6281 GB, free: 17.05 MB / 446.1 MB Notification: Performance of NFTyping.typeComponents: time 0.004332/0.4733, allocations: 1.634 MB / 0.6297 GB, free: 16.27 MB / 446.1 MB Notification: Performance of NFTyping.typeBindings: time 0.01588/0.4892, allocations: 5.977 MB / 0.6356 GB, free: 12.52 MB / 446.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.02389/0.513, allocations: 10.29 MB / 0.6456 GB, free: 4.539 MB / 446.1 MB Notification: Performance of NFFlatten.flatten: time 0.02645/0.5395, allocations: 26.71 MB / 0.6717 GB, free: 15.56 MB / 478.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.02503/0.5645, allocations: 19.1 MB / 0.6903 GB, free: 12.8 MB / 494.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.02714/0.5917, allocations: 17.8 MB / 0.7077 GB, free: 10.96 MB / 0.4981 GB Notification: Performance of NFSimplifyModel.simplify: time 0.03101/0.6227, allocations: 16.73 MB / 0.7241 GB, free: 10.19 MB / 0.5137 GB Notification: Performance of NFPackage.collectConstants: time 0.009957/0.6326, allocations: 3.129 MB / 0.7271 GB, free: 7.062 MB / 0.5137 GB Notification: Performance of NFFlatten.collectFunctions: time 0.03694/0.6696, allocations: 10.83 MB / 0.7377 GB, free: 12.21 MB / 0.5294 GB Notification: Performance of NFScalarize.scalarize: time 0.01324/0.6828, allocations: 7.062 MB / 0.7446 GB, free: 5.137 MB / 0.5294 GB Notification: Performance of NFVerifyModel.verify: time 0.02497/0.7078, allocations: 12.24 MB / 0.7565 GB, free: 8.848 MB / 0.545 GB Notification: Performance of NFConvertDAE.convert: time 0.07358/0.7813, allocations: 44.86 MB / 0.8003 GB, free: 11.85 MB / 0.5919 GB Notification: Performance of FrontEnd - DAE generated: time 6.101e-06/0.7814, allocations: 0 / 0.8003 GB, free: 11.85 MB / 0.5919 GB Notification: Performance of FrontEnd: time 1.453e-06/0.7814, allocations: 0 / 0.8003 GB, free: 11.85 MB / 0.5919 GB Notification: Performance of Transformations before backend: time 0.0008826/0.7822, allocations: 0 / 0.8003 GB, free: 11.85 MB / 0.5919 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3808 * Number of variables: 3808 Notification: Performance of Generate backend data structure: time 0.07881/0.861, allocations: 23.76 MB / 0.8235 GB, free: 3.938 MB / 0.6075 GB Notification: Performance of prepare preOptimizeDAE: time 4.081e-05/0.8611, allocations: 8.031 kB / 0.8236 GB, free: 3.93 MB / 0.6075 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.4755/1.337, allocations: 3.968 MB / 0.8274 GB, free: 184.3 MB / 0.6075 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0288/1.365, allocations: 12.24 MB / 0.8394 GB, free: 181.8 MB / 0.6075 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.001863/1.367, allocations: 2.139 MB / 0.8415 GB, free: 180.1 MB / 0.6075 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.008898/1.376, allocations: 1.531 MB / 0.843 GB, free: 179.6 MB / 0.6075 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.07322/1.449, allocations: 35.21 MB / 0.8774 GB, free: 163.6 MB / 0.6075 GB Notification: Performance of preOpt findStateOrder (simulation): time 0.0004974/1.45, allocations: 12.47 kB / 0.8774 GB, free: 163.6 MB / 0.6075 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.00721/1.457, allocations: 0.5926 MB / 0.8779 GB, free: 163.1 MB / 0.6075 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0002404/1.457, allocations: 361.3 kB / 0.8783 GB, free: 163.1 MB / 0.6075 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.07861/1.536, allocations: 47.7 MB / 0.9249 GB, free: 119.6 MB / 0.6075 GB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.2342/1.77, allocations: 130.6 MB / 1.052 GB, free: 4.195 MB / 0.6232 GB Notification: Performance of preOpt comSubExp (simulation): time 1.041/2.811, allocations: 275 MB / 1.321 GB, free: 8.082 MB / 0.6545 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.2738/3.085, allocations: 18.5 MB / 1.339 GB, free: 213.1 MB / 0.6545 GB Notification: Performance of preOpt evalFunc (simulation): time 0.1225/3.208, allocations: 90.03 MB / 1.427 GB, free: 160.1 MB / 0.6545 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 6.137e-05/3.208, allocations: 140 kB / 1.427 GB, free: 160 MB / 0.6545 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.02412/3.232, allocations: 6.355 MB / 1.433 GB, free: 156.8 MB / 0.6545 GB Notification: Performance of pre-optimization done (n=995): time 2.774e-05/3.232, allocations: 0 / 1.433 GB, free: 156.8 MB / 0.6545 GB Notification: Performance of matching and sorting (n=1129): time 0.6944/3.926, allocations: 135.9 MB / 1.566 GB, free: 21.54 MB / 0.6545 GB Notification: Performance of inlineWhenForInitialization (initialization): time 9.115e-05/3.926, allocations: 172.2 kB / 1.566 GB, free: 21.36 MB / 0.6545 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.2611/4.187, allocations: 10.16 MB / 1.576 GB, free: 204.3 MB / 0.6545 GB Notification: Performance of collectPreVariables (initialization): time 0.003415/4.191, allocations: 211.2 kB / 1.576 GB, free: 204.2 MB / 0.6545 GB Notification: Performance of collectInitialEqns (initialization): time 0.004203/4.195, allocations: 7.098 MB / 1.583 GB, free: 201.2 MB / 0.6545 GB Notification: Performance of collectInitialBindings (initialization): time 0.005923/4.201, allocations: 4.096 MB / 1.587 GB, free: 198.5 MB / 0.6545 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.006937/4.208, allocations: 3.277 MB / 1.591 GB, free: 197.3 MB / 0.6545 GB Notification: Performance of setup shared object (initialization): time 3.566e-05/4.208, allocations: 301.1 kB / 1.591 GB, free: 197 MB / 0.6545 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.01629/4.224, allocations: 11.82 MB / 1.602 GB, free: 192.7 MB / 0.6545 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.01842/4.243, allocations: 16.56 MB / 1.619 GB, free: 182.5 MB / 0.6545 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.04207/4.285, allocations: 29.74 MB / 1.648 GB, free: 166.2 MB / 0.6545 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0002105/4.285, allocations: 50.28 kB / 1.648 GB, free: 166.2 MB / 0.6545 GB Notification: Performance of matching and sorting (n=1889) (initialization): time 0.4423/4.727, allocations: 81.38 MB / 1.727 GB, free: 97.59 MB / 0.6545 GB Notification: Performance of prepare postOptimizeDAE: time 0.000161/4.727, allocations: 70.08 kB / 1.727 GB, free: 97.52 MB / 0.6545 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0002326/4.728, allocations: 152 kB / 1.727 GB, free: 97.37 MB / 0.6545 GB Notification: Performance of postOpt tearingSystem (initialization): time 0.05757/4.785, allocations: 22.37 MB / 1.749 GB, free: 75.14 MB / 0.6545 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.01613/4.801, allocations: 3.735 MB / 1.753 GB, free: 71.41 MB / 0.6545 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.4132/5.214, allocations: 93.91 MB / 1.844 GB, free: 166.8 MB / 0.6545 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.01681/5.231, allocations: 0.8296 MB / 1.845 GB, free: 166.6 MB / 0.6545 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.003688/5.235, allocations: 0.9316 MB / 1.846 GB, free: 166.4 MB / 0.6545 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 677 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (1841): * Single equations (assignments): 1838 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of prepare postOptimizeDAE: time 0.01035/5.245, allocations: 5.375 MB / 1.851 GB, free: 164.4 MB / 0.6545 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.00372/5.249, allocations: 1.111 MB / 1.853 GB, free: 164.4 MB / 0.6545 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.2594/5.508, allocations: 48.47 MB / 1.9 GB, free: 147.3 MB / 0.6545 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0001178/5.509, allocations: 128.8 kB / 1.9 GB, free: 147.3 MB / 0.6545 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 6.437e-05/5.509, allocations: 18.72 kB / 1.9 GB, free: 147.3 MB / 0.6545 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0003331/5.509, allocations: 59.77 kB / 1.9 GB, free: 147.3 MB / 0.6545 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.3009/5.81, allocations: 72.93 MB / 1.971 GB, free: 83.68 MB / 0.6545 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0001004/5.81, allocations: 15.91 kB / 1.971 GB, free: 83.67 MB / 0.6545 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.01328/5.823, allocations: 2.422 MB / 1.974 GB, free: 81.24 MB / 0.6545 GB Notification: Performance of postOpt tearingSystem (simulation): time 0.03052/5.854, allocations: 11.89 MB / 1.985 GB, free: 69.49 MB / 0.6545 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.003045/5.857, allocations: 475.5 kB / 1.986 GB, free: 69.03 MB / 0.6545 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.1006/5.957, allocations: 46.89 MB / 2.032 GB, free: 21.85 MB / 0.6545 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.308e-06/5.957, allocations: 8.625 kB / 2.032 GB, free: 21.84 MB / 0.6545 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.5465/6.504, allocations: 62.65 MB / 2.093 GB, free: 169.6 MB / 0.6545 GB Notification: Performance of postOpt removeConstants (simulation): time 0.009491/6.513, allocations: 3.356 MB / 2.096 GB, free: 168.7 MB / 0.6545 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.004968/6.518, allocations: 298.8 kB / 2.096 GB, free: 168.5 MB / 0.6545 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.01293/6.531, allocations: 0.5156 MB / 2.097 GB, free: 168.3 MB / 0.6545 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.005908/6.537, allocations: 1.515 MB / 2.098 GB, free: 168.1 MB / 0.6545 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.002272/6.539, allocations: 470.9 kB / 2.099 GB, free: 168 MB / 0.6545 GB Notification: Performance of sorting global known variables: time 0.01003/6.55, allocations: 6.968 MB / 2.106 GB, free: 165.7 MB / 0.6545 GB Notification: Performance of sort global known variables: time 1.7e-07/6.55, allocations: 0 / 2.106 GB, free: 165.7 MB / 0.6545 GB Notification: Performance of remove unused functions: time 0.0253/6.575, allocations: 6.719 MB / 2.112 GB, free: 165.1 MB / 0.6545 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 15 * Number of states: 60 (solution.temperature,O2_free.logn,H2O.logn,relaxed.OxyHm[1].logn,relaxed.OxyHm[2].logn,relaxed.OxyHm[3].logn,relaxed.OxyHm[4].logn,relaxed.DeoxyHm[1].logn,relaxed.DeoxyHm[2].logn,relaxed.DeoxyHm[3].logn,relaxed.DeoxyHm[4].logn,relaxed.HmAH[1].logn,relaxed.HmAH[2].logn,relaxed.HmAH[3].logn,relaxed.HmAH[4].logn,relaxed.HmA[1].logn,relaxed.HmA[2].logn,relaxed.HmA[3].logn,relaxed.HmA[4].logn,relaxed.HmNH3[1].logn,relaxed.HmNH3[2].logn,relaxed.HmNH3[3].logn,relaxed.HmNH3[4].logn,relaxed.HmNH2[1].logn,relaxed.HmNH2[2].logn,relaxed.HmNH2[3].logn,relaxed.HmNH2[4].logn,relaxed.HmNHCOO[1].logn,relaxed.HmNHCOO[2].logn,relaxed.HmNHCOO[3].logn,relaxed.HmNHCOO[4].logn,tensed.OxyHm[1].logn,tensed.OxyHm[2].logn,tensed.OxyHm[3].logn,tensed.OxyHm[4].logn,tensed.DeoxyHm[1].logn,tensed.DeoxyHm[2].logn,tensed.DeoxyHm[3].logn,tensed.DeoxyHm[4].logn,tensed.HmAH[1].logn,tensed.HmAH[2].logn,tensed.HmAH[3].logn,tensed.HmAH[4].logn,tensed.HmA[1].logn,tensed.HmA[2].logn,tensed.HmA[3].logn,tensed.HmA[4].logn,tensed.HmNH3[1].logn,tensed.HmNH3[2].logn,tensed.HmNH3[3].logn,tensed.HmNH3[4].logn,tensed.HmNH2[1].logn,tensed.HmNH2[2].logn,tensed.HmNH2[3].logn,tensed.HmNH2[4].logn,tensed.HmNHCOO[1].logn,tensed.HmNHCOO[2].logn,tensed.HmNHCOO[3].logn,tensed.HmNHCOO[4].logn,CO2_free.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (1234): * Single equations (assignments): 1231 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of Backend phase and start with SimCode phase: time 0.008183/6.583, allocations: 3.63 MB / 2.116 GB, free: 164.6 MB / 0.6545 GB Notification: Performance of simCode: created initialization part: time 0.06268/6.646, allocations: 26.37 MB / 2.141 GB, free: 155.3 MB / 0.6545 GB Notification: Performance of simCode: created event and clocks part: time 6.994e-06/6.646, allocations: 0 / 2.141 GB, free: 155.3 MB / 0.6545 GB Notification: Performance of simCode: created simulation system equations: time 0.03659/6.682, allocations: 13.61 MB / 2.155 GB, free: 146.8 MB / 0.6545 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.01692/6.699, allocations: 2.505 MB / 2.157 GB, free: 144.6 MB / 0.6545 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.07812/6.777, allocations: 37.98 MB / 2.194 GB, free: 106.7 MB / 0.6545 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.01042/6.788, allocations: 9.631 MB / 2.204 GB, free: 97.08 MB / 0.6545 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.007275/6.795, allocations: 1.565 MB / 2.205 GB, free: 95.51 MB / 0.6545 GB Notification: Performance of SimCode: time 1.393e-06/6.795, allocations: 0 / 2.205 GB, free: 95.51 MB / 0.6545 GB Notification: Performance of Templates: time 1.014/7.809, allocations: 0.5144 GB / 2.72 GB, free: 111.8 MB / 0.7014 GB " [Timeout remaining time 652] make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.makefile [Timeout 660] (rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.pipe 2>&1) [Timeout 480] [Calling sys.exit(0), Time elapsed: 32.224794745008694] Failed to read output from testmodel.py, exit status != 0: 7.817834579007467 7.826867789 7.043028061 Calling exit ...