Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo", uses=false) Using package BioChem with version 1.1.2 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo) Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo) Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo) Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo) Running command: translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel") translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel") Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.008925/0.008925, allocations: 96.72 kB / 15.73 MB, free: 6.004 MB / 14.72 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001407/0.001407, allocations: 194.5 kB / 16.67 MB, free: 5.934 MB / 14.72 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.358/1.358, allocations: 222.9 MB / 240.4 MB, free: 4.32 MB / 190.1 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo): time 0.186/0.186, allocations: 12.26 MB / 302.8 MB, free: 1.301 MB / 238.1 MB Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl" Notification: Performance of FrontEnd - loaded program: time 0.001187/0.001187, allocations: 55.91 kB / 419.2 MB, free: 4.328 MB / 350.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.2965/0.2977, allocations: 52.08 MB / 471.3 MB, free: 16.82 MB / 350.1 MB Notification: Performance of NFInst.instantiate(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel): time 0.01088/0.3086, allocations: 8.737 MB / 480 MB, free: 10.95 MB / 350.1 MB Notification: Performance of NFInst.instExpressions: time 0.005801/0.3144, allocations: 2.37 MB / 482.4 MB, free: 8.875 MB / 350.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.002012/0.3165, allocations: 113.2 kB / 482.5 MB, free: 8.875 MB / 350.1 MB Notification: Performance of NFTyping.typeComponents: time 0.001137/0.3176, allocations: 380.8 kB / 482.9 MB, free: 8.535 MB / 350.1 MB Notification: Performance of NFTyping.typeBindings: time 0.001863/0.3196, allocations: 0.526 MB / 483.4 MB, free: 8.062 MB / 350.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.0009947/0.3206, allocations: 0.5749 MB / 484 MB, free: 7.527 MB / 350.1 MB Notification: Performance of NFFlatten.flatten: time 0.002466/0.323, allocations: 2.333 MB / 486.3 MB, free: 6.062 MB / 350.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.001699/0.3247, allocations: 1.281 MB / 487.6 MB, free: 5.305 MB / 350.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.001654/0.3264, allocations: 0.9548 MB / 488.5 MB, free: 4.691 MB / 350.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.001085/0.3275, allocations: 1.079 MB / 489.6 MB, free: 3.863 MB / 350.1 MB Notification: Performance of NFPackage.collectConstants: time 0.0003978/0.3279, allocations: 317.6 kB / 489.9 MB, free: 3.863 MB / 350.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.0004997/0.3284, allocations: 316.6 kB / 490.2 MB, free: 3.863 MB / 350.1 MB Notification: Performance of NFScalarize.scalarize: time 0.0003196/0.3287, allocations: 0.5817 MB / 490.8 MB, free: 3.344 MB / 350.1 MB Notification: Performance of NFVerifyModel.verify: time 0.0008898/0.3296, allocations: 1.256 MB / 492.1 MB, free: 2.422 MB / 350.1 MB Notification: Performance of NFConvertDAE.convert: time 0.002887/0.3325, allocations: 3.441 MB / 495.5 MB, free: 15.67 MB / 366.1 MB Notification: Performance of FrontEnd - DAE generated: time 6.041e-06/0.3326, allocations: 0 / 495.5 MB, free: 15.67 MB / 366.1 MB Notification: Performance of FrontEnd: time 1.853e-06/0.3326, allocations: 5.375 kB / 495.5 MB, free: 15.67 MB / 366.1 MB Notification: Performance of Transformations before backend: time 7.335e-05/0.3326, allocations: 0 / 495.5 MB, free: 15.67 MB / 366.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 687 * Number of variables: 687 Notification: Performance of Generate backend data structure: time 0.004294/0.3369, allocations: 2.387 MB / 497.9 MB, free: 13.76 MB / 366.1 MB Notification: Performance of prepare preOptimizeDAE: time 5.305e-05/0.337, allocations: 12.03 kB / 497.9 MB, free: 13.75 MB / 366.1 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004389/0.3375, allocations: 251.3 kB / 498.2 MB, free: 13.5 MB / 366.1 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004786/0.3379, allocations: 417.4 kB / 498.6 MB, free: 13.05 MB / 366.1 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002482/0.3382, allocations: 261.4 kB / 498.8 MB, free: 12.79 MB / 366.1 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.000347/0.3386, allocations: 280.3 kB / 499.1 MB, free: 12.51 MB / 366.1 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003897/0.3425, allocations: 2.397 MB / 0.4898 GB, free: 10.03 MB / 366.1 MB Notification: Performance of preOpt findStateOrder (simulation): time 6.834e-05/0.3426, allocations: 11.89 kB / 0.4898 GB, free: 10.02 MB / 366.1 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001779/0.3427, allocations: 112 kB / 0.4899 GB, free: 9.906 MB / 366.1 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.802e-05/0.3428, allocations: 64 kB / 0.4899 GB, free: 9.844 MB / 366.1 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003049/0.3458, allocations: 1.687 MB / 0.4916 GB, free: 8.145 MB / 366.1 MB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01218/0.358, allocations: 8.379 MB / 0.4998 GB, free: 15.46 MB / 382.1 MB Notification: Performance of preOpt comSubExp (simulation): time 0.002181/0.3603, allocations: 1.579 MB / 0.5013 GB, free: 13.76 MB / 382.1 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.0008747/0.3611, allocations: 0.5502 MB / 0.5018 GB, free: 13.2 MB / 382.1 MB Notification: Performance of preOpt evalFunc (simulation): time 6.805e-05/0.3612, allocations: 13.31 kB / 0.5019 GB, free: 13.18 MB / 382.1 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.286e-05/0.3613, allocations: 55.81 kB / 0.5019 GB, free: 13.12 MB / 382.1 MB Notification: Performance of pre-optimization done (n=139): time 3.567e-06/0.3613, allocations: 4 kB / 0.5019 GB, free: 13.12 MB / 382.1 MB Notification: Performance of matching and sorting (n=171): time 0.02515/0.3864, allocations: 9.233 MB / 0.5109 GB, free: 3.828 MB / 382.1 MB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001173/0.3866, allocations: 179.6 kB / 0.5111 GB, free: 3.617 MB / 382.1 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005845/0.3872, allocations: 493.7 kB / 0.5116 GB, free: 3.129 MB / 382.1 MB Notification: Performance of collectPreVariables (initialization): time 8.683e-05/0.3873, allocations: 49.7 kB / 0.5116 GB, free: 3.074 MB / 382.1 MB Notification: Performance of collectInitialEqns (initialization): time 0.0005521/0.3879, allocations: 0.9837 MB / 0.5126 GB, free: 2.078 MB / 382.1 MB Notification: Performance of collectInitialBindings (initialization): time 0.0004801/0.3883, allocations: 0.6546 MB / 0.5132 GB, free: 1.418 MB / 382.1 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004765/0.3888, allocations: 348.1 kB / 0.5135 GB, free: 1.074 MB / 382.1 MB Notification: Performance of setup shared object (initialization): time 0.0001317/0.389, allocations: 326 kB / 0.5139 GB, free: 0.75 MB / 382.1 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001162/0.3901, allocations: 0.6693 MB / 0.5145 GB, free: 76 kB / 382.1 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001477/0.3916, allocations: 1.184 MB / 0.5157 GB, free: 14.62 MB / 398.1 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.01485/0.4065, allocations: 4.729 MB / 0.5203 GB, free: 9.625 MB / 398.1 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.303e-05/0.4065, allocations: 4 kB / 0.5203 GB, free: 9.621 MB / 398.1 MB Notification: Performance of matching and sorting (n=291) (initialization): time 0.003597/0.4101, allocations: 2.118 MB / 0.5224 GB, free: 7.496 MB / 398.1 MB Notification: Performance of prepare postOptimizeDAE: time 3.161e-05/0.4102, allocations: 15.94 kB / 0.5224 GB, free: 7.48 MB / 398.1 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.524e-05/0.4102, allocations: 24 kB / 0.5224 GB, free: 7.457 MB / 398.1 MB Notification: Performance of postOpt tearingSystem (initialization): time 3.849e-05/0.4103, allocations: 32 kB / 0.5224 GB, free: 7.426 MB / 398.1 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.002396/0.4127, allocations: 0.6437 MB / 0.5231 GB, free: 6.781 MB / 398.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 4.501e-05/0.4127, allocations: 39.86 kB / 0.5231 GB, free: 6.742 MB / 398.1 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001059/0.4138, allocations: 79.94 kB / 0.5232 GB, free: 6.664 MB / 398.1 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.000134/0.4139, allocations: 96 kB / 0.5233 GB, free: 6.57 MB / 398.1 MB Warning: Assuming fixed start value for the following 41 variables: V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real adiposeTissue1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real GlucoseRenalExcretion.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real GlucoseRenalExcretion.E.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real UtilizationMuscleTissue.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real UtilizationMuscleTissue.U_idm.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real GastroIntestinalTract.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real GastroIntestinalTract.GlucoseIntake.c:VARIABLE(min = 0.0 start = 78000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer ) "Current concentration of substance (mM)" type: Real TissueGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real PlasmaGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real PlasmaInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real LiverInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real EndogenousGlucoseProduction.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real EndogenousGlucoseProduction.I_po.c:VARIABLE(min = 0.0 start = 3.6 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer ) "Current concentration of substance (mM)" type: Real BetaCell.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real BetaCell.Y.c:VARIABLE(min = 0.0 start = 0.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer ) "Current concentration of substance (mM)" type: Real adiposeTissue1.adipocyte1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer ) "Compartment volume" type: Real adiposeTissue1.adipocyte1.IR.c:VARIABLE(min = 0.0 start = 2.34e12 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer ) "Current concentration of substance (mM)" type: Real adiposeTissue1.adipocyte1.IRS1.c:VARIABLE(min = 0.0 start = 1.61e10 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer ) "Current concentration of substance (mM)" type: Real adiposeTissue1.adipocyte1.PKB.c:VARIABLE(min = 0.0 start = 1.68e7 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer ) "Current concentration of substance (mM)" type: Real adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c:VARIABLE(min = 0.0 start = 5.8e8 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer ) "Current concentration of substance (mM)" type: Real adiposeTissue1.adipocyte1.IR_insulin.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real adiposeTissue1.adipocyte1.GlucoseUtilization.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real adiposeTissue1.adipocyte1.PKB_P.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real adiposeTissue1.adipocyte1.IRS1_P.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real BetaCell.G_p.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real EndogenousGlucoseProduction.End.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real EndogenousGlucoseProduction.I_d.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real EndogenousGlucoseProduction.I_1.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real LiverInsulin.Deg.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real LiverInsulin.I_l.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real UtilizationMuscleTissue.UtilizationReaction.X:VARIABLE(min = 0.0 unit = "mol/l" fixed = true ) type: Real PlasmaInsulin.Deg.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real PlasmaInsulin.I_p.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real PlasmaGlucose.U_ii.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real TissueGlucose.G_t.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real GastroIntestinalTract.End.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real GastroIntestinalTract.Q_sto1.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real GastroIntestinalTract.Q_gut.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real GastroIntestinalTract.Q_sto2.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 86 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (291): * Single equations (assignments): 291 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.001212/0.4152, allocations: 0.6038 MB / 0.5239 GB, free: 5.98 MB / 398.1 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002484/0.4154, allocations: 99.33 kB / 0.5239 GB, free: 5.883 MB / 398.1 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002555/0.418, allocations: 1.432 MB / 0.5253 GB, free: 4.445 MB / 398.1 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.637e-05/0.418, allocations: 19.94 kB / 0.5254 GB, free: 4.426 MB / 398.1 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.039e-05/0.418, allocations: 4 kB / 0.5254 GB, free: 4.422 MB / 398.1 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.771e-05/0.418, allocations: 15.95 kB / 0.5254 GB, free: 4.406 MB / 398.1 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.006068/0.4241, allocations: 3.57 MB / 0.5289 GB, free: 0.7656 MB / 398.1 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.993e-06/0.4241, allocations: 0 / 0.5289 GB, free: 0.7656 MB / 398.1 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.002327/0.4265, allocations: 491.4 kB / 0.5293 GB, free: 292 kB / 398.1 MB Notification: Performance of postOpt tearingSystem (simulation): time 1.526e-05/0.4265, allocations: 8 kB / 0.5293 GB, free: 284 kB / 398.1 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001344/0.4266, allocations: 63.89 kB / 0.5294 GB, free: 220 kB / 398.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.016e-05/0.4267, allocations: 8 kB / 0.5294 GB, free: 212 kB / 398.1 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.964e-06/0.4267, allocations: 4 kB / 0.5294 GB, free: 208 kB / 398.1 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003481/0.4302, allocations: 2.514 MB / 0.5319 GB, free: 13.66 MB / 414.1 MB Notification: Performance of postOpt removeConstants (simulation): time 0.000241/0.4304, allocations: 164.4 kB / 0.532 GB, free: 13.48 MB / 414.1 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001596/0.4306, allocations: 47.94 kB / 0.5321 GB, free: 13.44 MB / 414.1 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0007483/0.4313, allocations: 43.98 kB / 0.5321 GB, free: 13.39 MB / 414.1 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002054/0.4316, allocations: 109.1 kB / 0.5322 GB, free: 13.29 MB / 414.1 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.812e-05/0.4317, allocations: 55.95 kB / 0.5323 GB, free: 13.23 MB / 414.1 MB Notification: Performance of sorting global known variables: time 0.0003276/0.432, allocations: 294.9 kB / 0.5326 GB, free: 12.94 MB / 414.1 MB Notification: Performance of sort global known variables: time 1.31e-07/0.432, allocations: 0 / 0.5326 GB, free: 12.94 MB / 414.1 MB Notification: Performance of remove unused functions: time 0.001409/0.4334, allocations: 428 kB / 0.533 GB, free: 12.52 MB / 414.1 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 7 * Number of states: 41 (GastroIntestinalTract.V,GastroIntestinalTract.Q_sto2.n,GastroIntestinalTract.Q_gut.n,GastroIntestinalTract.Q_sto1.n,GastroIntestinalTract.GlucoseIntake.c,GastroIntestinalTract.End.n,TissueGlucose.V,TissueGlucose.G_t.n,PlasmaGlucose.V,PlasmaGlucose.U_ii.n,PlasmaInsulin.V,PlasmaInsulin.I_p.n,PlasmaInsulin.Deg.n,UtilizationMuscleTissue.UtilizationReaction.X,LiverInsulin.V,LiverInsulin.I_l.n,LiverInsulin.Deg.n,EndogenousGlucoseProduction.V,EndogenousGlucoseProduction.I_1.n,EndogenousGlucoseProduction.I_d.n,EndogenousGlucoseProduction.End.n,EndogenousGlucoseProduction.I_po.c,BetaCell.V,BetaCell.G_p.n,BetaCell.Y.c,adiposeTissue1.adipocyte1.V,adiposeTissue1.adipocyte1.IR.c,adiposeTissue1.adipocyte1.IRS1.c,adiposeTissue1.adipocyte1.IRS1_P.n,adiposeTissue1.adipocyte1.PKB.c,adiposeTissue1.adipocyte1.PKB_P.n,adiposeTissue1.adipocyte1.GlucoseUtilization.n,adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n,adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c,adiposeTissue1.adipocyte1.IR_insulin.n,V,adiposeTissue1.V,UtilizationMuscleTissue.V,UtilizationMuscleTissue.U_idm.n,GlucoseRenalExcretion.V,GlucoseRenalExcretion.E.n) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (173): * Single equations (assignments): 173 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001977/0.4336, allocations: 164.7 kB / 0.5331 GB, free: 12.36 MB / 414.1 MB Notification: Performance of simCode: created initialization part: time 0.002632/0.4363, allocations: 1.656 MB / 0.5347 GB, free: 10.71 MB / 414.1 MB Notification: Performance of simCode: created event and clocks part: time 2.765e-06/0.4363, allocations: 4 kB / 0.5347 GB, free: 10.7 MB / 414.1 MB Notification: Performance of simCode: created simulation system equations: time 0.00112/0.4374, allocations: 0.7491 MB / 0.5355 GB, free: 9.953 MB / 414.1 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001106/0.4385, allocations: 227.1 kB / 0.5357 GB, free: 9.73 MB / 414.1 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.007355/0.4459, allocations: 4.927 MB / 0.5405 GB, free: 4.75 MB / 414.1 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0009137/0.4468, allocations: 1.362 MB / 0.5418 GB, free: 3.352 MB / 414.1 MB Notification: Performance of simCode: alias equations: time 0.0008283/0.4477, allocations: 165.5 kB / 0.542 GB, free: 3.188 MB / 414.1 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003585/0.448, allocations: 107.4 kB / 0.5421 GB, free: 3.082 MB / 414.1 MB Notification: Performance of SimCode: time 1.462e-06/0.448, allocations: 0 / 0.5421 GB, free: 3.082 MB / 414.1 MB Notification: Performance of Templates: time 0.02655/0.4746, allocations: 16.5 MB / 0.5582 GB, free: 2.719 MB / 430.1 MB make -j1 -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.makefile (rm -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; mkfifo BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; head -c 1048576 < BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe >> ../files/BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.sim & ./BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel -abortSlowSimulation -alarm=480 -lv LOG_STATS > BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe 2>&1)