Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries/ --ompython_omhome=/usr BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo", uses=false)
Using package BioChem with version 1.1.2 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Running command: translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel")
translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel")
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.0007011/0.0007011, allocations: 87.42 kB / 15.07 MB, free: 1.082 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.0008577/0.0008578, allocations: 168.7 kB / 15.95 MB, free: 200 kB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.46/1.46, allocations: 223.3 MB / 240 MB, free: 5.422 MB / 190.1 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo): time 0.2214/0.2214, allocations: 12.26 MB / 303.3 MB, free: 2.051 MB / 238.1 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - loaded program: time 0.0003135/0.0003136, allocations: 12 kB / 366.9 MB, free: 9.801 MB / 302.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1262/0.1265, allocations: 53.08 MB / 420 MB, free: 4.609 MB / 350.1 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel): time 0.2589/0.3855, allocations: 7.759 MB / 427.8 MB, free: 34.63 MB / 350.1 MB
Notification: Performance of NFInst.instExpressions: time 0.006923/0.3925, allocations: 2.362 MB / 430.1 MB, free: 34.16 MB / 350.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00186/0.3944, allocations: 120.4 kB / 430.3 MB, free: 34.16 MB / 350.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.001282/0.3957, allocations: 303.6 kB / 430.6 MB, free: 34.06 MB / 350.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.001989/0.3977, allocations: 438.6 kB / 431 MB, free: 33.88 MB / 350.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001388/0.3991, allocations: 336.9 kB / 431.3 MB, free: 33.87 MB / 350.1 MB
Notification: Performance of NFFlatten.flatten: time 0.003449/0.4025, allocations: 2.118 MB / 433.4 MB, free: 33.37 MB / 350.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001828/0.4044, allocations: 0.9788 MB / 434.4 MB, free: 33.26 MB / 350.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.00116/0.4055, allocations: 0.6624 MB / 435.1 MB, free: 33.03 MB / 350.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0007599/0.4063, allocations: 0.7976 MB / 435.9 MB, free: 32.64 MB / 350.1 MB
Notification: Performance of NFPackage.collectConstants: time 0.000158/0.4065, allocations: 112.7 kB / 436 MB, free: 32.64 MB / 350.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0002153/0.4067, allocations: 113.8 kB / 436.1 MB, free: 32.64 MB / 350.1 MB
Notification: Performance of NFScalarize.scalarize: time 0.0002321/0.4069, allocations: 351.2 kB / 436.4 MB, free: 32.43 MB / 350.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.0003704/0.4073, allocations: 447 kB / 436.9 MB, free: 32.17 MB / 350.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.00198/0.4093, allocations: 2.685 MB / 439.6 MB, free: 31.67 MB / 350.1 MB
Notification: Performance of FrontEnd - DAE generated: time 1.433e-05/0.4093, allocations: 7.875 kB / 439.6 MB, free: 31.66 MB / 350.1 MB
Notification: Performance of FrontEnd: time 4.779e-06/0.4093, allocations: 0 / 439.6 MB, free: 31.66 MB / 350.1 MB
Notification: Performance of Transformations before backend: time 6.27e-05/0.4094, allocations: 1.281 kB / 439.6 MB, free: 31.66 MB / 350.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 687
 * Number of variables: 687
Notification: Performance of Generate backend data structure: time 0.003165/0.4126, allocations: 1.933 MB / 441.5 MB, free: 30.58 MB / 350.1 MB
Notification: Performance of prepare preOptimizeDAE: time 4.28e-05/0.4126, allocations: 11.12 kB / 441.5 MB, free: 30.58 MB / 350.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003076/0.4129, allocations: 234.9 kB / 441.7 MB, free: 30.46 MB / 350.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003417/0.4133, allocations: 409.1 kB / 442.1 MB, free: 30.09 MB / 350.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003035/0.4136, allocations: 257.9 kB / 442.4 MB, free: 29.94 MB / 350.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003239/0.4139, allocations: 283.1 kB / 442.7 MB, free: 29.84 MB / 350.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.004126/0.4181, allocations: 2.383 MB / 445 MB, free: 28.76 MB / 350.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 8.525e-05/0.4182, allocations: 3.344 kB / 445.1 MB, free: 28.76 MB / 350.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001777/0.4184, allocations: 108 kB / 445.2 MB, free: 28.68 MB / 350.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.088e-05/0.4184, allocations: 67.69 kB / 445.2 MB, free: 28.68 MB / 350.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00312/0.4216, allocations: 1.681 MB / 446.9 MB, free: 28.06 MB / 350.1 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01138/0.433, allocations: 8.442 MB / 455.3 MB, free: 22.99 MB / 350.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001984/0.435, allocations: 1.588 MB / 456.9 MB, free: 21.96 MB / 350.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0008377/0.4358, allocations: 0.5577 MB / 457.5 MB, free: 21.71 MB / 350.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 7.571e-05/0.4359, allocations: 17.78 kB / 457.5 MB, free: 21.71 MB / 350.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.686e-05/0.436, allocations: 46.03 kB / 457.6 MB, free: 21.66 MB / 350.1 MB
Notification: Performance of pre-optimization done (n=139): time 4.198e-06/0.436, allocations: 3 kB / 457.6 MB, free: 21.66 MB / 350.1 MB
Notification: Performance of matching and sorting (n=171): time 0.02204/0.458, allocations: 9.231 MB / 466.8 MB, free: 18.24 MB / 350.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 7.489e-05/0.4581, allocations: 178.9 kB / 467 MB, free: 18.05 MB / 350.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005865/0.4587, allocations: 488.1 kB / 467.4 MB, free: 17.8 MB / 350.1 MB
Notification: Performance of collectPreVariables (initialization): time 7.065e-05/0.4588, allocations: 51.33 kB / 467.5 MB, free: 17.75 MB / 350.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0005359/0.4594, allocations: 0.9474 MB / 468.4 MB, free: 17.02 MB / 350.1 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0004818/0.4598, allocations: 0.6272 MB / 469.1 MB, free: 16.53 MB / 350.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 7.795e-05/0.4599, allocations: 39.72 kB / 469.1 MB, free: 16.5 MB / 350.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001986/0.4601, allocations: 412.3 kB / 469.5 MB, free: 16.14 MB / 350.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.001393/0.4615, allocations: 0.663 MB / 470.2 MB, free: 15.87 MB / 350.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001495/0.463, allocations: 1.181 MB / 471.3 MB, free: 14.87 MB / 350.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001467/0.4645, allocations: 0.8647 MB / 472.2 MB, free: 14.4 MB / 350.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.367e-05/0.4645, allocations: 7.984 kB / 472.2 MB, free: 14.4 MB / 350.1 MB
Notification: Performance of matching and sorting (n=291) (initialization): time 0.004153/0.4687, allocations: 2.107 MB / 474.3 MB, free: 13.48 MB / 350.1 MB
Notification: Performance of prepare postOptimizeDAE: time 3.697e-05/0.4688, allocations: 13.75 kB / 474.3 MB, free: 13.48 MB / 350.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.825e-05/0.4688, allocations: 19.25 kB / 474.4 MB, free: 13.48 MB / 350.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 5.599e-05/0.4689, allocations: 33.8 kB / 474.4 MB, free: 13.48 MB / 350.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.002625/0.4715, allocations: 0.6512 MB / 475 MB, free: 13.42 MB / 350.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.759e-05/0.4716, allocations: 46.95 kB / 475.1 MB, free: 13.41 MB / 350.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.001319/0.4729, allocations: 158.3 kB / 475.2 MB, free: 13.35 MB / 350.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001551/0.4731, allocations: 97.17 kB / 475.3 MB, free: 13.32 MB / 350.1 MB
Warning: Assuming fixed start value for the following 41 variables:
         adiposeTissue1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         GlucoseRenalExcretion.E.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         GlucoseRenalExcretion.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         UtilizationMuscleTissue.U_idm.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         UtilizationMuscleTissue.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         adiposeTissue1.adipocyte1.IR_insulin.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c:VARIABLE(min = max(0.0, max(0.0, 0.0)) start = 580000000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         adiposeTissue1.adipocyte1.GlucoseUtilization.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         adiposeTissue1.adipocyte1.PKB_P.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         adiposeTissue1.adipocyte1.PKB.c:VARIABLE(min = max(0.0, max(0.0, 0.0)) start = 16800000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         adiposeTissue1.adipocyte1.IRS1_P.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         adiposeTissue1.adipocyte1.IRS1.c:VARIABLE(min = max(0.0, max(0.0, 0.0)) start = 16100000000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         adiposeTissue1.adipocyte1.IR.c:VARIABLE(min = max(0.0, max(0.0, 0.0)) start = 2340000000000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         adiposeTissue1.adipocyte1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         BetaCell.Y.c:VARIABLE(min = max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, 0.0))))))) start = 0.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         BetaCell.G_p.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         BetaCell.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         EndogenousGlucoseProduction.I_po.c:VARIABLE(min = max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, 0.0))))))))) start = 3.6 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         EndogenousGlucoseProduction.End.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         EndogenousGlucoseProduction.I_d.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         EndogenousGlucoseProduction.I_1.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         EndogenousGlucoseProduction.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         LiverInsulin.Deg.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         LiverInsulin.I_l.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         LiverInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         GastroIntestinalTract.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         GastroIntestinalTract.Q_sto2.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         GastroIntestinalTract.Q_gut.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         GastroIntestinalTract.Q_sto1.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         GastroIntestinalTract.GlucoseIntake.c:VARIABLE(min = max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, 0.0)))))) start = 78000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         GastroIntestinalTract.End.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         TissueGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         TissueGlucose.G_t.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         PlasmaGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         PlasmaGlucose.U_ii.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         PlasmaInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         PlasmaInsulin.I_p.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         PlasmaInsulin.Deg.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         UtilizationMuscleTissue.UtilizationReaction.X:VARIABLE(min = 0.0 unit = "mol/l" fixed = true )  type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 86
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (291):
 * Single equations (assignments): 291
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (linear and non-linear blocks): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.001544/0.4746, allocations: 0.6396 MB / 476 MB, free: 12.91 MB / 350.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004225/0.475, allocations: 94.31 kB / 476.1 MB, free: 12.87 MB / 350.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002737/0.4778, allocations: 1.45 MB / 477.5 MB, free: 12.22 MB / 350.1 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.924e-05/0.4778, allocations: 17.47 kB / 477.5 MB, free: 12.22 MB / 350.1 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.18e-05/0.4778, allocations: 2.062 kB / 477.5 MB, free: 12.22 MB / 350.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.49e-05/0.4779, allocations: 17.52 kB / 477.6 MB, free: 12.21 MB / 350.1 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.007119/0.485, allocations: 3.606 MB / 481.2 MB, free: 10.58 MB / 350.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 9.278e-06/0.485, allocations: 2.062 kB / 481.2 MB, free: 10.58 MB / 350.1 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.002404/0.4874, allocations: 487.1 kB / 481.6 MB, free: 10.55 MB / 350.1 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.198e-05/0.4875, allocations: 10.42 kB / 481.7 MB, free: 10.54 MB / 350.1 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001504/0.4876, allocations: 58.7 kB / 481.7 MB, free: 10.51 MB / 350.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.682e-05/0.4876, allocations: 8.047 kB / 481.7 MB, free: 10.51 MB / 350.1 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.008e-06/0.4877, allocations: 2.156 kB / 481.7 MB, free: 10.51 MB / 350.1 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00375/0.4914, allocations: 2.528 MB / 484.2 MB, free: 9.188 MB / 350.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0003564/0.4918, allocations: 156 kB / 484.4 MB, free: 9.043 MB / 350.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001693/0.492, allocations: 44.3 kB / 484.4 MB, free: 9.016 MB / 350.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0009108/0.4929, allocations: 113.7 kB / 484.6 MB, free: 8.969 MB / 350.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002535/0.4931, allocations: 111.9 kB / 484.7 MB, free: 8.953 MB / 350.1 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.312e-05/0.4932, allocations: 52.58 kB / 484.7 MB, free: 8.941 MB / 350.1 MB
Notification: Performance of sorting global known variables: time 0.0004077/0.4937, allocations: 297.7 kB / 485 MB, free: 8.789 MB / 350.1 MB
Notification: Performance of sort global known variables: time 2.01e-07/0.4937, allocations: 0 / 485 MB, free: 8.789 MB / 350.1 MB
Notification: Performance of remove unused functions: time 0.00246/0.4961, allocations: 424 kB / 485.4 MB, free: 8.734 MB / 350.1 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 7
 * Number of states: 41 (GastroIntestinalTract.V,GastroIntestinalTract.Q_sto2.n,GastroIntestinalTract.Q_gut.n,GastroIntestinalTract.Q_sto1.n,GastroIntestinalTract.GlucoseIntake.c,GastroIntestinalTract.End.n,TissueGlucose.V,TissueGlucose.G_t.n,PlasmaGlucose.V,PlasmaGlucose.U_ii.n,PlasmaInsulin.V,PlasmaInsulin.I_p.n,PlasmaInsulin.Deg.n,UtilizationMuscleTissue.UtilizationReaction.X,LiverInsulin.V,LiverInsulin.I_l.n,LiverInsulin.Deg.n,EndogenousGlucoseProduction.V,EndogenousGlucoseProduction.I_1.n,EndogenousGlucoseProduction.I_d.n,EndogenousGlucoseProduction.End.n,EndogenousGlucoseProduction.I_po.c,BetaCell.V,BetaCell.G_p.n,BetaCell.Y.c,adiposeTissue1.adipocyte1.V,adiposeTissue1.adipocyte1.IR.c,adiposeTissue1.adipocyte1.IRS1.c,adiposeTissue1.adipocyte1.IRS1_P.n,adiposeTissue1.adipocyte1.PKB.c,adiposeTissue1.adipocyte1.PKB_P.n,adiposeTissue1.adipocyte1.GlucoseUtilization.n,adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n,adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c,adiposeTissue1.adipocyte1.IR_insulin.n,V,adiposeTissue1.V,UtilizationMuscleTissue.V,UtilizationMuscleTissue.U_idm.n,GlucoseRenalExcretion.V,GlucoseRenalExcretion.E.n)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (173):
 * Single equations (assignments): 173
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (linear and non-linear blocks): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0002157/0.4964, allocations: 157.7 kB / 485.6 MB, free: 8.605 MB / 350.1 MB
Notification: Performance of simCode: created initialization part: time 0.003227/0.4996, allocations: 1.66 MB / 487.2 MB, free: 7.992 MB / 350.1 MB
Notification: Performance of simCode: created event and clocks part: time 4.399e-06/0.4996, allocations: 0 / 487.2 MB, free: 7.992 MB / 350.1 MB
Notification: Performance of simCode: created simulation system equations: time 0.001316/0.5009, allocations: 0.7565 MB / 488 MB, free: 7.723 MB / 350.1 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001419/0.5024, allocations: 213.4 kB / 488.2 MB, free: 7.633 MB / 350.1 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.008253/0.5106, allocations: 6.154 MB / 494.4 MB, free: 2.168 MB / 350.1 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0009333/0.5116, allocations: 1.37 MB / 495.7 MB, free: 1 MB / 350.1 MB
Notification: Performance of simCode: alias equations: time 0.001171/0.5128, allocations: 163 kB / 495.9 MB, free: 0.8789 MB / 350.1 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0003464/0.5131, allocations: 113.9 kB / 496 MB, free: 0.7812 MB / 350.1 MB
Notification: Performance of SimCode: time 1.292e-06/0.5131, allocations: 0 / 496 MB, free: 0.7812 MB / 350.1 MB
Notification: Performance of Templates: time 0.02619/0.5393, allocations: 14.55 MB / 0.4986 GB, free: 2.496 MB / 366.1 MB
make -j1 -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.makefile
(rm -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; mkfifo BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe ; head -c 1048576 < BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe >> ../files/BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.sim & ./BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel  -abortSlowSimulation -alarm=480 -lv LOG_STATS > BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.pipe 2>&1)