[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "
Before silumation in "Dymola 2014 FD01" please set e...".
Defaulting to 7-bit ASCII with unknown characters replaced by '?'.
To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY").
To change it in a package: add a file package.encoding at the top-level.
Note: The Modelica Language Specification only allows files encoded in UTF-8.
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.1043/0.1043, allocations: 15.4 MB / 286.4 MB, free: 5.898 MB / 238.1 MB
Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.0005967/0.0005971, allocations: 16 kB / 348.3 MB, free: 18.19 MB / 254.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1256/0.1262, allocations: 51.41 MB / 399.7 MB, free: 14.66 MB / 302.1 MB
Notification: Performance of NFInst.instantiate(Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit): time 0.003041/0.1293, allocations: 2.432 MB / 402.2 MB, free: 12.21 MB / 302.1 MB
Notification: Performance of NFInst.instExpressions: time 0.00427/0.1336, allocations: 2.683 MB / 404.8 MB, free: 9.52 MB / 302.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001667/0.1338, allocations: 7.938 kB / 404.9 MB, free: 9.512 MB / 302.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.0001758/0.134, allocations: 35.7 kB / 404.9 MB, free: 9.477 MB / 302.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.A.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.A.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.A.Utilities.UnitConversions.findUnit‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.B.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.B.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.B.Utilities.UnitConversions.findUnit‘.
Notification: Performance of NFTyping.typeBindings: time 0.001109/0.1351, allocations: 310.7 kB / 405.2 MB, free: 9.172 MB / 302.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.A.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.A.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.B.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.B.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
Notification: Performance of NFTyping.typeClassSections: time 0.0009379/0.1361, allocations: 367.2 kB / 405.6 MB, free: 8.812 MB / 302.1 MB
Notification: Performance of NFFlatten.flatten: time 0.0004426/0.1365, allocations: 330.5 kB / 405.9 MB, free: 8.488 MB / 302.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001663/0.1367, allocations: 44.72 kB / 405.9 MB, free: 8.449 MB / 302.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001164/0.1368, allocations: 91.58 kB / 406 MB, free: 8.359 MB / 302.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002709/0.1371, allocations: 123.4 kB / 406.1 MB, free: 8.238 MB / 302.1 MB
Notification: Performance of NFPackage.collectConstants: time 2.668e-05/0.1371, allocations: 8 kB / 406.1 MB, free: 8.23 MB / 302.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 3.162e-05/0.1372, allocations: 8 kB / 406.1 MB, free: 8.223 MB / 302.1 MB
Notification: Performance of NFScalarize.scalarize: time 7.004e-05/0.1372, allocations: 51.75 kB / 406.2 MB, free: 8.172 MB / 302.1 MB
Notification: Performance of NFVerifyModel.verify: time 7.34e-05/0.1373, allocations: 61.58 kB / 406.3 MB, free: 8.105 MB / 302.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.000199/0.1375, allocations: 159.9 kB / 406.4 MB, free: 7.949 MB / 302.1 MB
Notification: Performance of FrontEnd - DAE generated: time 5.4e-06/0.1375, allocations: 0 / 406.4 MB, free: 7.949 MB / 302.1 MB
Notification: Performance of FrontEnd: time 2.074e-06/0.1375, allocations: 0 / 406.4 MB, free: 7.949 MB / 302.1 MB
Notification: Performance of Transformations before backend: time 4.739e-06/0.1376, allocations: 4 kB / 406.4 MB, free: 7.945 MB / 302.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
* Number of equations: 31
* Number of variables: 31
Notification: Performance of Generate backend data structure: time 0.0008707/0.1384, allocations: 0.4944 MB / 406.9 MB, free: 7.402 MB / 302.1 MB
Notification: Performance of prepare preOptimizeDAE: time 4.278e-05/0.1385, allocations: 12.02 kB / 406.9 MB, free: 7.391 MB / 302.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 6.084e-05/0.1386, allocations: 31.58 kB / 407 MB, free: 7.359 MB / 302.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003666/0.1389, allocations: 286.3 kB / 407.2 MB, free: 7.043 MB / 302.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.118e-05/0.139, allocations: 16 kB / 407.2 MB, free: 7.027 MB / 302.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.184e-05/0.139, allocations: 12 kB / 407.3 MB, free: 7.016 MB / 302.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002538/0.1393, allocations: 137.6 kB / 407.4 MB, free: 6.875 MB / 302.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.173e-05/0.1393, allocations: 3.938 kB / 407.4 MB, free: 6.871 MB / 302.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.921e-05/0.1393, allocations: 8 kB / 407.4 MB, free: 6.863 MB / 302.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 4.729e-06/0.1393, allocations: 0 / 407.4 MB, free: 6.863 MB / 302.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001708/0.1395, allocations: 95.89 kB / 407.5 MB, free: 6.77 MB / 302.1 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001054/0.1405, allocations: 0.5469 MB / 408 MB, free: 6.172 MB / 302.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0002131/0.1408, allocations: 134.4 kB / 408.2 MB, free: 6.031 MB / 302.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 8.715e-05/0.1409, allocations: 56.83 kB / 408.2 MB, free: 5.973 MB / 302.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 1.665e-05/0.1409, allocations: 7.984 kB / 408.2 MB, free: 5.965 MB / 302.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.412e-05/0.1409, allocations: 30.56 kB / 408.3 MB, free: 5.926 MB / 302.1 MB
Notification: Performance of pre-optimization done (n=11): time 1.263e-06/0.1409, allocations: 0 / 408.3 MB, free: 5.926 MB / 302.1 MB
Notification: Performance of matching and sorting (n=11): time 0.0003374/0.1413, allocations: 169.3 kB / 408.4 MB, free: 5.754 MB / 302.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.269e-05/0.1413, allocations: 59.36 kB / 408.5 MB, free: 5.684 MB / 302.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002738/0.1416, allocations: 275 kB / 408.8 MB, free: 5.398 MB / 302.1 MB
Notification: Performance of collectPreVariables (initialization): time 1.951e-05/0.1416, allocations: 29.7 kB / 408.8 MB, free: 5.363 MB / 302.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001067/0.1418, allocations: 152.2 kB / 408.9 MB, free: 5.211 MB / 302.1 MB
Notification: Performance of collectInitialBindings (initialization): time 3.343e-05/0.1418, allocations: 43.36 kB / 409 MB, free: 5.168 MB / 302.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 9.999e-06/0.1418, allocations: 4 kB / 409 MB, free: 5.164 MB / 302.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001405/0.142, allocations: 334.8 kB / 409.3 MB, free: 4.828 MB / 302.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 7.843e-05/0.142, allocations: 44.34 kB / 409.4 MB, free: 4.785 MB / 302.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001053/0.1422, allocations: 85.88 kB / 409.4 MB, free: 4.684 MB / 302.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.000101/0.1423, allocations: 63.97 kB / 409.5 MB, free: 4.621 MB / 302.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.883e-06/0.1423, allocations: 0 / 409.5 MB, free: 4.621 MB / 302.1 MB
Notification: Performance of matching and sorting (n=21) (initialization): time 0.0002785/0.1426, allocations: 197.1 kB / 409.7 MB, free: 4.422 MB / 302.1 MB
Notification: Performance of prepare postOptimizeDAE: time 1.603e-05/0.1426, allocations: 4 kB / 409.7 MB, free: 4.418 MB / 302.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 7.724e-06/0.1426, allocations: 4 kB / 409.7 MB, free: 4.414 MB / 302.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.315e-05/0.1426, allocations: 4.156 kB / 409.7 MB, free: 4.41 MB / 302.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001912/0.1428, allocations: 43.92 kB / 409.7 MB, free: 4.367 MB / 302.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.234e-05/0.1428, allocations: 7.953 kB / 409.8 MB, free: 4.359 MB / 302.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001212/0.143, allocations: 15.84 kB / 409.8 MB, free: 4.344 MB / 302.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.503e-05/0.143, allocations: 11.98 kB / 409.8 MB, free: 4.332 MB / 302.1 MB
Notification: Model statistics after passing the back-end for initialization:
* Number of independent subsystems: 6
* Number of states: 0 ()
* Number of discrete variables: 0 ()
* Number of discrete states: 0 ()
* Number of clocked states: 0 ()
* Top-level inputs: 0
Notification: Strong component statistics for initialization (21):
* Single equations (assignments): 21
* Array equations: 0
* Algorithm blocks: 0
* Record equations: 0
* When equations: 0
* If-equations: 0
* Equation systems (linear and non-linear blocks): 0
* Torn equation systems: 0
* Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001251/0.1431, allocations: 129.8 kB / 409.9 MB, free: 4.195 MB / 302.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 4.245e-05/0.1432, allocations: 23.72 kB / 409.9 MB, free: 4.172 MB / 302.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 7.065e-05/0.1432, allocations: 29.78 kB / 410 MB, free: 4.145 MB / 302.1 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.936e-06/0.1432, allocations: 7.938 kB / 410 MB, free: 4.137 MB / 302.1 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.392e-06/0.1433, allocations: 0 / 410 MB, free: 4.137 MB / 302.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.653e-06/0.1433, allocations: 3.953 kB / 410 MB, free: 4.133 MB / 302.1 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.000333/0.1436, allocations: 277.5 kB / 410.2 MB, free: 3.812 MB / 302.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.113e-06/0.1436, allocations: 0 / 410.2 MB, free: 3.812 MB / 302.1 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001322/0.1438, allocations: 23.98 kB / 410.3 MB, free: 3.789 MB / 302.1 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.124e-06/0.1438, allocations: 0 / 410.3 MB, free: 3.789 MB / 302.1 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.183e-05/0.1438, allocations: 0 / 410.3 MB, free: 3.789 MB / 302.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.707e-06/0.1438, allocations: 3.938 kB / 410.3 MB, free: 3.785 MB / 302.1 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.72e-07/0.1438, allocations: 7.938 kB / 410.3 MB, free: 3.777 MB / 302.1 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0003641/0.1442, allocations: 307.4 kB / 410.6 MB, free: 3.461 MB / 302.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 9.988e-05/0.1443, allocations: 108.8 kB / 410.7 MB, free: 3.336 MB / 302.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.938e-05/0.1443, allocations: 3.938 kB / 410.7 MB, free: 3.332 MB / 302.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001123/0.1444, allocations: 8 kB / 410.7 MB, free: 3.324 MB / 302.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 2.024e-05/0.1445, allocations: 7.984 kB / 410.7 MB, free: 3.316 MB / 302.1 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.351e-06/0.1445, allocations: 0 / 410.7 MB, free: 3.316 MB / 302.1 MB
Notification: Performance of sorting global known variables: time 0.0001797/0.1447, allocations: 190 kB / 410.9 MB, free: 3.137 MB / 302.1 MB
Notification: Performance of sort global known variables: time 1.11e-07/0.1447, allocations: 0 / 410.9 MB, free: 3.137 MB / 302.1 MB
Notification: Performance of remove unused functions: time 0.0002728/0.1449, allocations: 56 kB / 410.9 MB, free: 3.082 MB / 302.1 MB
Notification: Model statistics after passing the back-end for simulation:
* Number of independent subsystems: 1
* Number of states: 2 (A.state,B.state)
* Number of discrete variables: 0 ()
* Number of discrete states: 0 ()
* Number of clocked states: 0 ()
* Top-level inputs: 0
Notification: Strong component statistics for simulation (11):
* Single equations (assignments): 11
* Array equations: 0
* Algorithm blocks: 0
* Record equations: 0
* When equations: 0
* If-equations: 0
* Equation systems (linear and non-linear blocks): 0
* Torn equation systems: 0
* Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001072/0.1451, allocations: 95.19 kB / 411 MB, free: 2.977 MB / 302.1 MB
Notification: Performance of simCode: created initialization part: time 0.0002171/0.1453, allocations: 111.9 kB / 411.1 MB, free: 2.867 MB / 302.1 MB
Notification: Performance of simCode: created event and clocks part: time 2.044e-06/0.1453, allocations: 0 / 411.1 MB, free: 2.867 MB / 302.1 MB
Notification: Performance of simCode: created simulation system equations: time 7.149e-05/0.1454, allocations: 51.91 kB / 411.2 MB, free: 2.816 MB / 302.1 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.00046/0.1458, allocations: 65.12 kB / 411.3 MB, free: 2.75 MB / 302.1 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0007927/0.1466, allocations: 0.5354 MB / 411.8 MB, free: 2.18 MB / 302.1 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004491/0.1471, allocations: 0.7482 MB / 412.5 MB, free: 1.406 MB / 302.1 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 7.592e-05/0.1472, allocations: 31.42 kB / 412.6 MB, free: 1.375 MB / 302.1 MB
Notification: Performance of SimCode: time 2.21e-07/0.1472, allocations: 0 / 412.6 MB, free: 1.375 MB / 302.1 MB
Notification: Performance of Templates: time 0.005167/0.1524, allocations: 2.882 MB / 415.5 MB, free: 14.49 MB / 318.1 MB
make -j1 -f Physiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.makefile
make -j1 -f Physiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.makefile clang++ NOTFOUND -Winvalid-pch -O0 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DUSE_DGESV -DUSE_LOGGER -DOMC_BUILD -DUSE_THREAD -DSUNDIALS_MAJOR_VERSION=5 -DSUNDIALS_MINOR_VERSION=4 -DPMC_USE_SUNDIALS -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/c/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPhysiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInitCalcHelperMain.o OMCppPhysiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInitCalcHelperMain.cpp
clang: error: no such file or directory: 'NOTFOUND'
make: *** [