[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "
Before silumation in "Dymola 2014 FD01" please set e...".
Defaulting to 7-bit ASCII with unknown characters replaced by '?'.
To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY").
To change it in a package: add a file package.encoding at the top-level.
Note: The Modelica Language Specification only allows files encoded in UTF-8.
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.104/0.104, allocations: 15.39 MB / 286.4 MB, free: 6.121 MB / 238.1 MB
Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.0005347/0.0005348, allocations: 12 kB / 348.3 MB, free: 18.22 MB / 254.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1201/0.1206, allocations: 51.42 MB / 399.7 MB, free: 14.68 MB / 302.1 MB
Notification: Performance of NFInst.instantiate(Physiolibrary.Population.Examples.PredatorPrey): time 0.002599/0.1233, allocations: 2.066 MB / 401.8 MB, free: 12.61 MB / 302.1 MB
Notification: Performance of NFInst.instExpressions: time 0.004463/0.1278, allocations: 2.608 MB / 404.4 MB, free: 9.984 MB / 302.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.000159/0.1279, allocations: 7.938 kB / 404.4 MB, free: 9.977 MB / 302.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.000124/0.1281, allocations: 15.8 kB / 404.4 MB, free: 9.961 MB / 302.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Population.Examples.PredatorPrey.predator.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Population.Examples.PredatorPrey.predator.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Population.Examples.PredatorPrey.predator.Utilities.UnitConversions.findUnit‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Population.Examples.PredatorPrey.prey.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Population.Examples.PredatorPrey.prey.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Population.Examples.PredatorPrey.prey.Utilities.UnitConversions.findUnit‘.
Notification: Performance of NFTyping.typeBindings: time 0.0009327/0.129, allocations: 278.8 kB / 404.7 MB, free: 9.688 MB / 302.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Population.Examples.PredatorPrey.predator.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Population.Examples.PredatorPrey.predator.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Population.Examples.PredatorPrey.prey.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Population.Examples.PredatorPrey.prey.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
Notification: Performance of NFTyping.typeClassSections: time 0.0009401/0.13, allocations: 343.3 kB / 405 MB, free: 9.352 MB / 302.1 MB
Notification: Performance of NFFlatten.flatten: time 0.0002706/0.1302, allocations: 218.9 kB / 405.2 MB, free: 9.137 MB / 302.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001627/0.1304, allocations: 64.66 kB / 405.3 MB, free: 9.07 MB / 302.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 7.661e-05/0.1305, allocations: 59.73 kB / 405.4 MB, free: 9.012 MB / 302.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001285/0.1306, allocations: 79.58 kB / 405.4 MB, free: 8.934 MB / 302.1 MB
Notification: Performance of NFPackage.collectConstants: time 1.822e-05/0.1307, allocations: 4 kB / 405.5 MB, free: 8.93 MB / 302.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 2.527e-05/0.1307, allocations: 8 kB / 405.5 MB, free: 8.922 MB / 302.1 MB
Notification: Performance of NFScalarize.scalarize: time 3.04e-05/0.1307, allocations: 23.86 kB / 405.5 MB, free: 8.898 MB / 302.1 MB
Notification: Performance of NFVerifyModel.verify: time 6.274e-05/0.1308, allocations: 65.58 kB / 405.5 MB, free: 8.828 MB / 302.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.0002044/0.131, allocations: 135.9 kB / 405.7 MB, free: 8.695 MB / 302.1 MB
Notification: Performance of FrontEnd - DAE generated: time 1.161e-05/0.131, allocations: 0 / 405.7 MB, free: 8.695 MB / 302.1 MB
Notification: Performance of FrontEnd: time 2.826e-06/0.131, allocations: 3.938 kB / 405.7 MB, free: 8.691 MB / 302.1 MB
Notification: Performance of Transformations before backend: time 8.035e-06/0.1311, allocations: 3.938 kB / 405.7 MB, free: 8.688 MB / 302.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
* Number of equations: 34
* Number of variables: 34
Notification: Performance of Generate backend data structure: time 0.0006604/0.1317, allocations: 470.7 kB / 406.1 MB, free: 8.18 MB / 302.1 MB
Notification: Performance of prepare preOptimizeDAE: time 3.423e-05/0.1318, allocations: 8.031 kB / 406.2 MB, free: 8.172 MB / 302.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 5.031e-05/0.1318, allocations: 27.67 kB / 406.2 MB, free: 8.145 MB / 302.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003246/0.1321, allocations: 254.2 kB / 406.4 MB, free: 7.855 MB / 302.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.001e-05/0.1322, allocations: 12.28 kB / 406.4 MB, free: 7.844 MB / 302.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.275e-05/0.1322, allocations: 19.94 kB / 406.5 MB, free: 7.824 MB / 302.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002148/0.1324, allocations: 119.9 kB / 406.6 MB, free: 7.703 MB / 302.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.107e-05/0.1325, allocations: 0 / 406.6 MB, free: 7.703 MB / 302.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.59e-05/0.1325, allocations: 7.984 kB / 406.6 MB, free: 7.695 MB / 302.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.163e-06/0.1325, allocations: 12 kB / 406.6 MB, free: 7.684 MB / 302.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001404/0.1326, allocations: 76.19 kB / 406.7 MB, free: 7.609 MB / 302.1 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.000812/0.1335, allocations: 0.5158 MB / 407.2 MB, free: 7.043 MB / 302.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001997/0.1337, allocations: 114.6 kB / 407.3 MB, free: 6.922 MB / 302.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 8.569e-05/0.1338, allocations: 40.86 kB / 407.3 MB, free: 6.879 MB / 302.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 1.268e-05/0.1338, allocations: 4 kB / 407.3 MB, free: 6.875 MB / 302.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.64e-05/0.1338, allocations: 34.55 kB / 407.4 MB, free: 6.832 MB / 302.1 MB
Notification: Performance of pre-optimization done (n=12): time 1.132e-06/0.1338, allocations: 0 / 407.4 MB, free: 6.832 MB / 302.1 MB
Notification: Performance of matching and sorting (n=12): time 0.0002891/0.1341, allocations: 145.7 kB / 407.5 MB, free: 6.684 MB / 302.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.095e-05/0.1342, allocations: 51.41 kB / 407.6 MB, free: 6.621 MB / 302.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002244/0.1344, allocations: 212.1 kB / 407.8 MB, free: 6.402 MB / 302.1 MB
Notification: Performance of collectPreVariables (initialization): time 1.812e-05/0.1344, allocations: 29.7 kB / 407.8 MB, free: 6.367 MB / 302.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.000113/0.1345, allocations: 148.2 kB / 407.9 MB, free: 6.219 MB / 302.1 MB
Notification: Performance of collectInitialBindings (initialization): time 4.869e-05/0.1346, allocations: 43.45 kB / 408 MB, free: 6.176 MB / 302.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 7.494e-06/0.1346, allocations: 4 kB / 408 MB, free: 6.172 MB / 302.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001465/0.1348, allocations: 326.8 kB / 408.3 MB, free: 5.844 MB / 302.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 7.235e-05/0.1348, allocations: 44.36 kB / 408.4 MB, free: 5.801 MB / 302.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001031/0.135, allocations: 59.31 kB / 408.4 MB, free: 5.734 MB / 302.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 8.315e-05/0.135, allocations: 44 kB / 408.5 MB, free: 5.691 MB / 302.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.593e-06/0.1351, allocations: 0 / 408.5 MB, free: 5.691 MB / 302.1 MB
Notification: Performance of matching and sorting (n=22) (initialization): time 0.0002401/0.1353, allocations: 165.2 kB / 408.6 MB, free: 5.523 MB / 302.1 MB
Notification: Performance of prepare postOptimizeDAE: time 2.042e-05/0.1353, allocations: 8 kB / 408.6 MB, free: 5.516 MB / 302.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.027e-05/0.1354, allocations: 0 / 408.6 MB, free: 5.516 MB / 302.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.918e-05/0.1354, allocations: 8 kB / 408.6 MB, free: 5.508 MB / 302.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001574/0.1356, allocations: 31.98 kB / 408.7 MB, free: 5.477 MB / 302.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.102e-05/0.1356, allocations: 7.984 kB / 408.7 MB, free: 5.469 MB / 302.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 8.536e-05/0.1357, allocations: 23.73 kB / 408.7 MB, free: 5.445 MB / 302.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.182e-05/0.1357, allocations: 4 kB / 408.7 MB, free: 5.441 MB / 302.1 MB
Notification: Model statistics after passing the back-end for initialization:
* Number of independent subsystems: 3
* Number of states: 0 ()
* Number of discrete variables: 0 ()
* Number of discrete states: 0 ()
* Number of clocked states: 0 ()
* Top-level inputs: 0
Notification: Strong component statistics for initialization (22):
* Single equations (assignments): 22
* Array equations: 0
* Algorithm blocks: 0
* Record equations: 0
* When equations: 0
* If-equations: 0
* Equation systems (linear and non-linear blocks): 0
* Torn equation systems: 0
* Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001229/0.1358, allocations: 137.8 kB / 408.8 MB, free: 5.297 MB / 302.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 5.145e-05/0.1359, allocations: 23.73 kB / 408.9 MB, free: 5.273 MB / 302.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 5.947e-05/0.136, allocations: 29.33 kB / 408.9 MB, free: 5.242 MB / 302.1 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.039e-06/0.136, allocations: 4 kB / 408.9 MB, free: 5.238 MB / 302.1 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.732e-06/0.136, allocations: 0 / 408.9 MB, free: 5.238 MB / 302.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.108e-06/0.136, allocations: 0 / 408.9 MB, free: 5.238 MB / 302.1 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00031/0.1363, allocations: 261.4 kB / 409.1 MB, free: 4.934 MB / 302.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.458e-06/0.1363, allocations: 4 kB / 409.2 MB, free: 4.93 MB / 302.1 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001067/0.1364, allocations: 12 kB / 409.2 MB, free: 4.918 MB / 302.1 MB
Notification: Performance of postOpt tearingSystem (simulation): time 1.893e-06/0.1364, allocations: 4 kB / 409.2 MB, free: 4.914 MB / 302.1 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.414e-05/0.1365, allocations: 4 kB / 409.2 MB, free: 4.91 MB / 302.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.336e-06/0.1365, allocations: 0 / 409.2 MB, free: 4.91 MB / 302.1 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.51e-07/0.1365, allocations: 3.938 kB / 409.2 MB, free: 4.906 MB / 302.1 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0003171/0.1368, allocations: 255.3 kB / 409.4 MB, free: 4.641 MB / 302.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 8.423e-05/0.1369, allocations: 104.9 kB / 409.5 MB, free: 4.52 MB / 302.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.471e-05/0.1369, allocations: 4 kB / 409.5 MB, free: 4.516 MB / 302.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 7.945e-05/0.137, allocations: 7.844 kB / 409.5 MB, free: 4.508 MB / 302.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 2.149e-05/0.137, allocations: 7.984 kB / 409.5 MB, free: 4.5 MB / 302.1 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.048e-05/0.137, allocations: 8 kB / 409.6 MB, free: 4.492 MB / 302.1 MB
Notification: Performance of sorting global known variables: time 0.0001162/0.1372, allocations: 145.9 kB / 409.7 MB, free: 4.352 MB / 302.1 MB
Notification: Performance of sort global known variables: time 1.3e-07/0.1372, allocations: 4.062 kB / 409.7 MB, free: 4.348 MB / 302.1 MB
Notification: Performance of remove unused functions: time 0.0002606/0.1374, allocations: 40 kB / 409.7 MB, free: 4.309 MB / 302.1 MB
Notification: Model statistics after passing the back-end for simulation:
* Number of independent subsystems: 1
* Number of states: 2 (predator.state,prey.state)
* Number of discrete variables: 0 ()
* Number of discrete states: 0 ()
* Number of clocked states: 0 ()
* Top-level inputs: 0
Notification: Strong component statistics for simulation (12):
* Single equations (assignments): 12
* Array equations: 0
* Algorithm blocks: 0
* Record equations: 0
* When equations: 0
* If-equations: 0
* Equation systems (linear and non-linear blocks): 0
* Torn equation systems: 0
* Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 9.757e-05/0.1375, allocations: 95.19 kB / 409.8 MB, free: 4.207 MB / 302.1 MB
Notification: Performance of simCode: created initialization part: time 0.000202/0.1378, allocations: 99.86 kB / 409.9 MB, free: 4.109 MB / 302.1 MB
Notification: Performance of simCode: created event and clocks part: time 2.184e-06/0.1378, allocations: 0 / 409.9 MB, free: 4.109 MB / 302.1 MB
Notification: Performance of simCode: created simulation system equations: time 5.717e-05/0.1378, allocations: 39.98 kB / 410 MB, free: 4.07 MB / 302.1 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004033/0.1382, allocations: 40.77 kB / 410 MB, free: 4.027 MB / 302.1 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0007169/0.139, allocations: 442.5 kB / 410.4 MB, free: 3.562 MB / 302.1 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003852/0.1394, allocations: 0.7363 MB / 411.2 MB, free: 2.801 MB / 302.1 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 5.444e-05/0.1394, allocations: 19.44 kB / 411.2 MB, free: 2.781 MB / 302.1 MB
Notification: Performance of SimCode: time 2.21e-07/0.1394, allocations: 0 / 411.2 MB, free: 2.781 MB / 302.1 MB
Notification: Performance of Templates: time 0.004266/0.1437, allocations: 2.232 MB / 413.4 MB, free: 0.5469 MB / 302.1 MB
make -j1 -f Physiolibrary_Physiolibrary.Population.Examples.PredatorPrey.makefile
make -j1 -f Physiolibrary_Physiolibrary.Population.Examples.PredatorPrey.makefile clang++ NOTFOUND -Winvalid-pch -O0 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DUSE_DGESV -DUSE_LOGGER -DOMC_BUILD -DUSE_THREAD -DSUNDIALS_MAJOR_VERSION=5 -DSUNDIALS_MINOR_VERSION=4 -DPMC_USE_SUNDIALS -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/c/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPhysiolibrary_Physiolibrary.Population.Examples.PredatorPreyCalcHelperMain.o OMCppPhysiolibrary_Physiolibrary.Population.Examples.PredatorPreyCalcHelperMain.cpp
clang: error: no such file or directory: 'NOTFOUND'
make: *** [