[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "
Before silumation in "Dymola 2014 FD01" please set e...".
Defaulting to 7-bit ASCII with unknown characters replaced by '?'.
To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY").
To change it in a package: add a file package.encoding at the top-level.
Note: The Modelica Language Specification only allows files encoded in UTF-8.
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.09353/0.09353, allocations: 15.4 MB / 286.4 MB, free: 5.891 MB / 238.1 MB
Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.0006237/0.0006237, allocations: 12 kB / 348.3 MB, free: 18.2 MB / 254.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1284/0.1291, allocations: 51.42 MB / 399.7 MB, free: 14.66 MB / 302.1 MB
Notification: Performance of NFInst.instantiate(Physiolibrary.Chemical.Examples.SimpleReaction2): time 0.003731/0.1329, allocations: 2.463 MB / 402.2 MB, free: 12.18 MB / 302.1 MB
Notification: Performance of NFInst.instExpressions: time 0.00604/0.1389, allocations: 3.427 MB / 405.6 MB, free: 8.742 MB / 302.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001774/0.1391, allocations: 7.938 kB / 405.6 MB, free: 8.734 MB / 302.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.0001838/0.1393, allocations: 31.7 kB / 405.7 MB, free: 8.703 MB / 302.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.A.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.A.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.A.Utilities.UnitConversions.findUnit‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.B.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.B.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.B.Utilities.UnitConversions.findUnit‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.C.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.C.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.C.Utilities.UnitConversions.findUnit‘.
Notification: Performance of NFTyping.typeBindings: time 0.001203/0.1405, allocations: 406.2 kB / 406.1 MB, free: 8.305 MB / 302.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.A.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.A.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.B.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.B.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.C.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction2.C.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
Notification: Performance of NFTyping.typeClassSections: time 0.001176/0.1417, allocations: 471 kB / 406.5 MB, free: 7.844 MB / 302.1 MB
Notification: Performance of NFFlatten.flatten: time 0.0004726/0.1422, allocations: 350.3 kB / 406.9 MB, free: 7.5 MB / 302.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001594/0.1424, allocations: 48.72 kB / 406.9 MB, free: 7.453 MB / 302.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001307/0.1425, allocations: 103.5 kB / 407 MB, free: 7.352 MB / 302.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002484/0.1428, allocations: 139.4 kB / 407.1 MB, free: 7.215 MB / 302.1 MB
Notification: Performance of NFPackage.collectConstants: time 2.697e-05/0.1428, allocations: 8 kB / 407.2 MB, free: 7.207 MB / 302.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 3.631e-05/0.1428, allocations: 12 kB / 407.2 MB, free: 7.195 MB / 302.1 MB
Notification: Performance of NFScalarize.scalarize: time 7.652e-05/0.1429, allocations: 47.75 kB / 407.2 MB, free: 7.148 MB / 302.1 MB
Notification: Performance of NFVerifyModel.verify: time 7.285e-05/0.143, allocations: 77.58 kB / 407.3 MB, free: 7.066 MB / 302.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.0002177/0.1432, allocations: 191.7 kB / 407.5 MB, free: 6.879 MB / 302.1 MB
Notification: Performance of FrontEnd - DAE generated: time 5.62e-06/0.1432, allocations: 0 / 407.5 MB, free: 6.879 MB / 302.1 MB
Notification: Performance of FrontEnd: time 1.643e-06/0.1432, allocations: 0 / 407.5 MB, free: 6.879 MB / 302.1 MB
Notification: Performance of Transformations before backend: time 5.31e-06/0.1433, allocations: 0 / 407.5 MB, free: 6.879 MB / 302.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
* Number of equations: 34
* Number of variables: 34
Notification: Performance of Generate backend data structure: time 0.000898/0.1442, allocations: 0.5491 MB / 408 MB, free: 6.281 MB / 302.1 MB
Notification: Performance of prepare preOptimizeDAE: time 3.761e-05/0.1442, allocations: 11.97 kB / 408 MB, free: 6.27 MB / 302.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 6.653e-05/0.1443, allocations: 35.58 kB / 408.1 MB, free: 6.234 MB / 302.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004108/0.1447, allocations: 306.3 kB / 408.4 MB, free: 5.898 MB / 302.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001239/0.1448, allocations: 12.28 kB / 408.4 MB, free: 5.887 MB / 302.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.535e-05/0.1449, allocations: 16 kB / 408.4 MB, free: 5.871 MB / 302.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002523/0.1451, allocations: 147.5 kB / 408.5 MB, free: 5.723 MB / 302.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.679e-05/0.1452, allocations: 0 / 408.5 MB, free: 5.723 MB / 302.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.767e-05/0.1452, allocations: 7.938 kB / 408.5 MB, free: 5.715 MB / 302.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.111e-05/0.1452, allocations: 11.95 kB / 408.6 MB, free: 5.703 MB / 302.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.000198/0.1454, allocations: 107.9 kB / 408.7 MB, free: 5.598 MB / 302.1 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001305/0.1467, allocations: 0.6132 MB / 409.3 MB, free: 4.934 MB / 302.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0002656/0.147, allocations: 142.5 kB / 409.4 MB, free: 4.785 MB / 302.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001305/0.1471, allocations: 68.88 kB / 409.5 MB, free: 4.715 MB / 302.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 1.425e-05/0.1472, allocations: 0 / 409.5 MB, free: 4.715 MB / 302.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.705e-05/0.1472, allocations: 38.56 kB / 409.5 MB, free: 4.668 MB / 302.1 MB
Notification: Performance of pre-optimization done (n=14): time 9.52e-07/0.1472, allocations: 3.938 kB / 409.5 MB, free: 4.664 MB / 302.1 MB
Notification: Performance of matching and sorting (n=14): time 0.0004429/0.1477, allocations: 213.3 kB / 409.7 MB, free: 4.449 MB / 302.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.95e-05/0.1477, allocations: 55.41 kB / 409.8 MB, free: 4.383 MB / 302.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003308/0.148, allocations: 300.5 kB / 410.1 MB, free: 4.074 MB / 302.1 MB
Notification: Performance of collectPreVariables (initialization): time 4.72e-05/0.1481, allocations: 29.7 kB / 410.1 MB, free: 4.039 MB / 302.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001253/0.1482, allocations: 164.2 kB / 410.3 MB, free: 3.875 MB / 302.1 MB
Notification: Performance of collectInitialBindings (initialization): time 4.603e-05/0.1483, allocations: 51.2 kB / 410.3 MB, free: 3.824 MB / 302.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 1.334e-05/0.1483, allocations: 8 kB / 410.3 MB, free: 3.816 MB / 302.1 MB
Notification: Performance of setup shared object (initialization): time 0.0002586/0.1487, allocations: 342.8 kB / 410.7 MB, free: 3.473 MB / 302.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001033/0.1488, allocations: 56.44 kB / 410.7 MB, free: 3.414 MB / 302.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001539/0.1489, allocations: 123.9 kB / 410.8 MB, free: 3.27 MB / 302.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0001331/0.1491, allocations: 80.91 kB / 410.9 MB, free: 3.191 MB / 302.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.324e-06/0.1491, allocations: 0 / 410.9 MB, free: 3.191 MB / 302.1 MB
Notification: Performance of matching and sorting (n=28) (initialization): time 0.0003592/0.1495, allocations: 242.9 kB / 411.2 MB, free: 2.949 MB / 302.1 MB
Notification: Performance of prepare postOptimizeDAE: time 1.642e-05/0.1495, allocations: 4 kB / 411.2 MB, free: 2.945 MB / 302.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 7.865e-06/0.1495, allocations: 4.219 kB / 411.2 MB, free: 2.941 MB / 302.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.928e-05/0.1495, allocations: 8 kB / 411.2 MB, free: 2.934 MB / 302.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002291/0.1498, allocations: 59.89 kB / 411.2 MB, free: 2.875 MB / 302.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 9.969e-06/0.1498, allocations: 3.953 kB / 411.2 MB, free: 2.871 MB / 302.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001437/0.1499, allocations: 27.69 kB / 411.3 MB, free: 2.844 MB / 302.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.529e-05/0.1499, allocations: 12 kB / 411.3 MB, free: 2.832 MB / 302.1 MB
Notification: Model statistics after passing the back-end for initialization:
* Number of independent subsystems: 8
* Number of states: 0 ()
* Number of discrete variables: 0 ()
* Number of discrete states: 0 ()
* Number of clocked states: 0 ()
* Top-level inputs: 0
Notification: Strong component statistics for initialization (28):
* Single equations (assignments): 28
* Array equations: 0
* Algorithm blocks: 0
* Record equations: 0
* When equations: 0
* If-equations: 0
* Equation systems (linear and non-linear blocks): 0
* Torn equation systems: 0
* Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001518/0.1501, allocations: 145.8 kB / 411.4 MB, free: 2.68 MB / 302.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 4.669e-05/0.1502, allocations: 27.62 kB / 411.4 MB, free: 2.652 MB / 302.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 7.739e-05/0.1502, allocations: 34.83 kB / 411.5 MB, free: 2.617 MB / 302.1 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.783e-06/0.1503, allocations: 4 kB / 411.5 MB, free: 2.613 MB / 302.1 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 7.625e-06/0.1503, allocations: 0 / 411.5 MB, free: 2.613 MB / 302.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.761e-06/0.1503, allocations: 7.891 kB / 411.5 MB, free: 2.605 MB / 302.1 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0003368/0.1506, allocations: 301.4 kB / 411.8 MB, free: 2.262 MB / 302.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.102e-06/0.1506, allocations: 0 / 411.8 MB, free: 2.262 MB / 302.1 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.000152/0.1508, allocations: 27.98 kB / 411.8 MB, free: 2.234 MB / 302.1 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.054e-06/0.1508, allocations: 0 / 411.8 MB, free: 2.234 MB / 302.1 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.455e-05/0.1508, allocations: 0 / 411.8 MB, free: 2.234 MB / 302.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.473e-06/0.1508, allocations: 4 kB / 411.8 MB, free: 2.23 MB / 302.1 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.015e-06/0.1508, allocations: 0 / 411.8 MB, free: 2.23 MB / 302.1 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.000494/0.1513, allocations: 355 kB / 412.2 MB, free: 1.867 MB / 302.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.000127/0.1515, allocations: 116.7 kB / 412.3 MB, free: 1.734 MB / 302.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.883e-05/0.1515, allocations: 4 kB / 412.3 MB, free: 1.73 MB / 302.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001304/0.1517, allocations: 7.984 kB / 412.3 MB, free: 1.723 MB / 302.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 3.844e-05/0.1517, allocations: 4 kB / 412.3 MB, free: 1.719 MB / 302.1 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.147e-05/0.1517, allocations: 8 kB / 412.3 MB, free: 1.711 MB / 302.1 MB
Notification: Performance of sorting global known variables: time 0.0002186/0.1519, allocations: 211 kB / 412.5 MB, free: 1.508 MB / 302.1 MB
Notification: Performance of sort global known variables: time 1.41e-07/0.152, allocations: 4 kB / 412.5 MB, free: 1.504 MB / 302.1 MB
Notification: Performance of remove unused functions: time 0.000312/0.1523, allocations: 59.91 kB / 412.6 MB, free: 1.445 MB / 302.1 MB
Notification: Model statistics after passing the back-end for simulation:
* Number of independent subsystems: 1
* Number of states: 3 (A.state,B.state,C.state)
* Number of discrete variables: 0 ()
* Number of discrete states: 0 ()
* Number of clocked states: 0 ()
* Top-level inputs: 0
Notification: Strong component statistics for simulation (14):
* Single equations (assignments): 14
* Array equations: 0
* Algorithm blocks: 0
* Record equations: 0
* When equations: 0
* If-equations: 0
* Equation systems (linear and non-linear blocks): 0
* Torn equation systems: 0
* Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001348/0.1524, allocations: 103.1 kB / 412.7 MB, free: 1.336 MB / 302.1 MB
Notification: Performance of simCode: created initialization part: time 0.0002835/0.1527, allocations: 143.9 kB / 412.8 MB, free: 1.195 MB / 302.1 MB
Notification: Performance of simCode: created event and clocks part: time 2.405e-06/0.1527, allocations: 0 / 412.8 MB, free: 1.195 MB / 302.1 MB
Notification: Performance of simCode: created simulation system equations: time 8.685e-05/0.1528, allocations: 59.91 kB / 412.9 MB, free: 1.137 MB / 302.1 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004811/0.1533, allocations: 77.47 kB / 412.9 MB, free: 1.062 MB / 302.1 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0008706/0.1542, allocations: 0.6148 MB / 413.6 MB, free: 424 kB / 302.1 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003789/0.1546, allocations: 0.7716 MB / 414.3 MB, free: 15.61 MB / 318.1 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 7.597e-05/0.1546, allocations: 31.36 kB / 414.4 MB, free: 15.58 MB / 318.1 MB
Notification: Performance of SimCode: time 2.81e-07/0.1547, allocations: 3.938 kB / 414.4 MB, free: 15.58 MB / 318.1 MB
Notification: Performance of Templates: time 0.006028/0.1607, allocations: 3.318 MB / 417.7 MB, free: 12.25 MB / 318.1 MB
make -j1 -f Physiolibrary_Physiolibrary.Chemical.Examples.SimpleReaction2.makefile
make -j1 -f Physiolibrary_Physiolibrary.Chemical.Examples.SimpleReaction2.makefile clang++ NOTFOUND -Winvalid-pch -O0 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DUSE_DGESV -DUSE_LOGGER -DOMC_BUILD -DUSE_THREAD -DSUNDIALS_MAJOR_VERSION=5 -DSUNDIALS_MINOR_VERSION=4 -DPMC_USE_SUNDIALS -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/c/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPhysiolibrary_Physiolibrary.Chemical.Examples.SimpleReaction2CalcHelperMain.o OMCppPhysiolibrary_Physiolibrary.Chemical.Examples.SimpleReaction2CalcHelperMain.cpp
clang: error: no such file or directory: 'NOTFOUND'
make: *** [