[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "
Before silumation in "Dymola 2014 FD01" please set e...".
Defaulting to 7-bit ASCII with unknown characters replaced by '?'.
To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY").
To change it in a package: add a file package.encoding at the top-level.
Note: The Modelica Language Specification only allows files encoded in UTF-8.
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.1022/0.1022, allocations: 15.41 MB / 286.4 MB, free: 5.871 MB / 238.1 MB
Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.0006099/0.00061, allocations: 19.94 kB / 348.3 MB, free: 18.18 MB / 254.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.128/0.1286, allocations: 51.41 MB / 399.7 MB, free: 14.66 MB / 302.1 MB
Notification: Performance of NFInst.instantiate(Physiolibrary.Chemical.Examples.SimpleReaction): time 0.002862/0.1315, allocations: 2.26 MB / 402 MB, free: 12.39 MB / 302.1 MB
Notification: Performance of NFInst.instExpressions: time 0.003908/0.1355, allocations: 2.648 MB / 404.6 MB, free: 9.73 MB / 302.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001447/0.1356, allocations: 11.88 kB / 404.6 MB, free: 9.719 MB / 302.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.0001569/0.1358, allocations: 27.78 kB / 404.7 MB, free: 9.691 MB / 302.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction.A.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction.A.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.SimpleReaction.A.Utilities.UnitConversions.findUnit‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction.B.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction.B.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.SimpleReaction.B.Utilities.UnitConversions.findUnit‘.
Notification: Performance of NFTyping.typeBindings: time 0.00094/0.1367, allocations: 306.7 kB / 405 MB, free: 9.391 MB / 302.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction.A.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction.A.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction.B.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.SimpleReaction.B.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
Notification: Performance of NFTyping.typeClassSections: time 0.0007685/0.1375, allocations: 355.2 kB / 405.3 MB, free: 9.043 MB / 302.1 MB
Notification: Performance of NFFlatten.flatten: time 0.0003148/0.1378, allocations: 278.7 kB / 405.6 MB, free: 8.77 MB / 302.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001496/0.138, allocations: 32.38 kB / 405.6 MB, free: 8.738 MB / 302.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001031/0.1381, allocations: 79.66 kB / 405.7 MB, free: 8.66 MB / 302.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002028/0.1383, allocations: 115.5 kB / 405.8 MB, free: 8.547 MB / 302.1 MB
Notification: Performance of NFPackage.collectConstants: time 2.164e-05/0.1384, allocations: 4 kB / 405.8 MB, free: 8.543 MB / 302.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 3.08e-05/0.1384, allocations: 8 kB / 405.8 MB, free: 8.535 MB / 302.1 MB
Notification: Performance of NFScalarize.scalarize: time 6.52e-05/0.1385, allocations: 31.84 kB / 405.8 MB, free: 8.504 MB / 302.1 MB
Notification: Performance of NFVerifyModel.verify: time 5.748e-05/0.1385, allocations: 65.58 kB / 405.9 MB, free: 8.434 MB / 302.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.0001702/0.1387, allocations: 147.8 kB / 406.1 MB, free: 8.289 MB / 302.1 MB
Notification: Performance of FrontEnd - DAE generated: time 6.502e-06/0.1387, allocations: 0 / 406.1 MB, free: 8.289 MB / 302.1 MB
Notification: Performance of FrontEnd: time 1.453e-06/0.1387, allocations: 0 / 406.1 MB, free: 8.289 MB / 302.1 MB
Notification: Performance of Transformations before backend: time 5.411e-06/0.1387, allocations: 0 / 406.1 MB, free: 8.289 MB / 302.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
* Number of equations: 25
* Number of variables: 25
Notification: Performance of Generate backend data structure: time 0.0007722/0.1395, allocations: 486.4 kB / 406.5 MB, free: 7.766 MB / 302.1 MB
Notification: Performance of prepare preOptimizeDAE: time 4.122e-05/0.1396, allocations: 12.02 kB / 406.5 MB, free: 7.754 MB / 302.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 5.764e-05/0.1396, allocations: 31.67 kB / 406.6 MB, free: 7.723 MB / 302.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003593/0.14, allocations: 273.5 kB / 406.8 MB, free: 7.418 MB / 302.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.584e-05/0.14, allocations: 8 kB / 406.8 MB, free: 7.41 MB / 302.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.534e-05/0.1401, allocations: 12 kB / 406.9 MB, free: 7.398 MB / 302.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002292/0.1403, allocations: 106.2 kB / 407 MB, free: 7.289 MB / 302.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.553e-05/0.1403, allocations: 4 kB / 407 MB, free: 7.285 MB / 302.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.575e-05/0.1403, allocations: 8 kB / 407 MB, free: 7.277 MB / 302.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.683e-06/0.1404, allocations: 0 / 407 MB, free: 7.277 MB / 302.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001492/0.1405, allocations: 75.95 kB / 407.1 MB, free: 7.203 MB / 302.1 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0009121/0.1414, allocations: 0.5118 MB / 407.6 MB, free: 6.641 MB / 302.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001894/0.1416, allocations: 114.5 kB / 407.7 MB, free: 6.52 MB / 302.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 7.464e-05/0.1417, allocations: 52.83 kB / 407.7 MB, free: 6.465 MB / 302.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 1.347e-05/0.1417, allocations: 3.984 kB / 407.7 MB, free: 6.461 MB / 302.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.167e-05/0.1418, allocations: 34.56 kB / 407.8 MB, free: 6.418 MB / 302.1 MB
Notification: Performance of pre-optimization done (n=10): time 1.283e-06/0.1418, allocations: 4 kB / 407.8 MB, free: 6.414 MB / 302.1 MB
Notification: Performance of matching and sorting (n=10): time 0.0003011/0.1421, allocations: 157.4 kB / 407.9 MB, free: 6.254 MB / 302.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.841e-05/0.1421, allocations: 51.41 kB / 408 MB, free: 6.191 MB / 302.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002458/0.1424, allocations: 254.6 kB / 408.2 MB, free: 5.938 MB / 302.1 MB
Notification: Performance of collectPreVariables (initialization): time 1.85e-05/0.1424, allocations: 29.64 kB / 408.2 MB, free: 5.902 MB / 302.1 MB
Notification: Performance of collectInitialEqns (initialization): time 9.859e-05/0.1425, allocations: 148.3 kB / 408.4 MB, free: 5.754 MB / 302.1 MB
Notification: Performance of collectInitialBindings (initialization): time 4.258e-05/0.1426, allocations: 39.39 kB / 408.4 MB, free: 5.715 MB / 302.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 9.898e-06/0.1426, allocations: 4 kB / 408.4 MB, free: 5.711 MB / 302.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001239/0.1427, allocations: 334.8 kB / 408.8 MB, free: 5.375 MB / 302.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 7.278e-05/0.1428, allocations: 47.92 kB / 408.8 MB, free: 5.328 MB / 302.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001069/0.1429, allocations: 85.11 kB / 408.9 MB, free: 5.227 MB / 302.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 9.776e-05/0.143, allocations: 51.98 kB / 408.9 MB, free: 5.176 MB / 302.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.974e-06/0.143, allocations: 4 kB / 408.9 MB, free: 5.172 MB / 302.1 MB
Notification: Performance of matching and sorting (n=20) (initialization): time 0.0002471/0.1433, allocations: 177.2 kB / 409.1 MB, free: 4.992 MB / 302.1 MB
Notification: Performance of prepare postOptimizeDAE: time 1.562e-05/0.1433, allocations: 8 kB / 409.1 MB, free: 4.984 MB / 302.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.41e-06/0.1433, allocations: 384 / 409.1 MB, free: 4.984 MB / 302.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.983e-05/0.1433, allocations: 4 kB / 409.1 MB, free: 4.98 MB / 302.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001644/0.1435, allocations: 39.92 kB / 409.2 MB, free: 4.941 MB / 302.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 7.153e-06/0.1435, allocations: 0 / 409.2 MB, free: 4.941 MB / 302.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001109/0.1436, allocations: 27.67 kB / 409.2 MB, free: 4.914 MB / 302.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.335e-05/0.1437, allocations: 12.16 kB / 409.2 MB, free: 4.902 MB / 302.1 MB
Notification: Model statistics after passing the back-end for initialization:
* Number of independent subsystems: 6
* Number of states: 0 ()
* Number of discrete variables: 0 ()
* Number of discrete states: 0 ()
* Number of clocked states: 0 ()
* Top-level inputs: 0
Notification: Strong component statistics for initialization (20):
* Single equations (assignments): 20
* Array equations: 0
* Algorithm blocks: 0
* Record equations: 0
* When equations: 0
* If-equations: 0
* Equation systems (linear and non-linear blocks): 0
* Torn equation systems: 0
* Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001551/0.1438, allocations: 141.7 kB / 409.3 MB, free: 4.754 MB / 302.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 4.012e-05/0.1439, allocations: 19.72 kB / 409.4 MB, free: 4.734 MB / 302.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 5.238e-05/0.1439, allocations: 21.72 kB / 409.4 MB, free: 4.715 MB / 302.1 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.874e-06/0.1439, allocations: 4 kB / 409.4 MB, free: 4.711 MB / 302.1 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.831e-06/0.1439, allocations: 3.984 kB / 409.4 MB, free: 4.707 MB / 302.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.725e-06/0.1439, allocations: 0 / 409.4 MB, free: 4.707 MB / 302.1 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0003024/0.1443, allocations: 253.5 kB / 409.6 MB, free: 4.41 MB / 302.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.222e-06/0.1443, allocations: 4 kB / 409.6 MB, free: 4.406 MB / 302.1 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001113/0.1444, allocations: 19.98 kB / 409.7 MB, free: 4.387 MB / 302.1 MB
Notification: Performance of postOpt tearingSystem (simulation): time 3.918e-06/0.1444, allocations: 4 kB / 409.7 MB, free: 4.383 MB / 302.1 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.076e-05/0.1444, allocations: 0 / 409.7 MB, free: 4.383 MB / 302.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.302e-06/0.1444, allocations: 0 / 409.7 MB, free: 4.383 MB / 302.1 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 6.62e-07/0.1444, allocations: 0 / 409.7 MB, free: 4.383 MB / 302.1 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0003097/0.1447, allocations: 279.1 kB / 409.9 MB, free: 4.094 MB / 302.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 8.44e-05/0.1448, allocations: 104.8 kB / 410 MB, free: 3.973 MB / 302.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.328e-05/0.1449, allocations: 11.98 kB / 410.1 MB, free: 3.961 MB / 302.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001063/0.145, allocations: 8 kB / 410.1 MB, free: 3.953 MB / 302.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 3.521e-05/0.145, allocations: 11.94 kB / 410.1 MB, free: 3.941 MB / 302.1 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.049e-06/0.145, allocations: 3.938 kB / 410.1 MB, free: 3.938 MB / 302.1 MB
Notification: Performance of sorting global known variables: time 0.0001869/0.1452, allocations: 182 kB / 410.3 MB, free: 3.758 MB / 302.1 MB
Notification: Performance of sort global known variables: time 1e-07/0.1452, allocations: 0 / 410.3 MB, free: 3.758 MB / 302.1 MB
Notification: Performance of remove unused functions: time 0.0002773/0.1455, allocations: 40 kB / 410.3 MB, free: 3.719 MB / 302.1 MB
Notification: Model statistics after passing the back-end for simulation:
* Number of independent subsystems: 1
* Number of states: 2 (A.state,B.state)
* Number of discrete variables: 0 ()
* Number of discrete states: 0 ()
* Number of clocked states: 0 ()
* Top-level inputs: 0
Notification: Strong component statistics for simulation (10):
* Single equations (assignments): 10
* Array equations: 0
* Algorithm blocks: 0
* Record equations: 0
* When equations: 0
* If-equations: 0
* Equation systems (linear and non-linear blocks): 0
* Torn equation systems: 0
* Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001142/0.1456, allocations: 95.25 kB / 410.4 MB, free: 3.617 MB / 302.1 MB
Notification: Performance of simCode: created initialization part: time 0.0002233/0.1459, allocations: 115.9 kB / 410.5 MB, free: 3.504 MB / 302.1 MB
Notification: Performance of simCode: created event and clocks part: time 2.154e-06/0.1459, allocations: 0 / 410.5 MB, free: 3.504 MB / 302.1 MB
Notification: Performance of simCode: created simulation system equations: time 6.413e-05/0.146, allocations: 44.08 kB / 410.5 MB, free: 3.461 MB / 302.1 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004709/0.1464, allocations: 52.61 kB / 410.6 MB, free: 3.41 MB / 302.1 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0007321/0.1472, allocations: 0.4924 MB / 411.1 MB, free: 2.887 MB / 302.1 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003629/0.1476, allocations: 0.7443 MB / 411.8 MB, free: 2.117 MB / 302.1 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 6.456e-05/0.1476, allocations: 23.44 kB / 411.9 MB, free: 2.094 MB / 302.1 MB
Notification: Performance of SimCode: time 2.51e-07/0.1476, allocations: 0 / 411.9 MB, free: 2.094 MB / 302.1 MB
Notification: Performance of Templates: time 0.004555/0.1522, allocations: 2.538 MB / 414.4 MB, free: 15.55 MB / 318.1 MB
make -j1 -f Physiolibrary_Physiolibrary.Chemical.Examples.SimpleReaction.makefile
make -j1 -f Physiolibrary_Physiolibrary.Chemical.Examples.SimpleReaction.makefile clang++ NOTFOUND -Winvalid-pch -O0 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DUSE_DGESV -DUSE_LOGGER -DOMC_BUILD -DUSE_THREAD -DSUNDIALS_MAJOR_VERSION=5 -DSUNDIALS_MINOR_VERSION=4 -DPMC_USE_SUNDIALS -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/c/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPhysiolibrary_Physiolibrary.Chemical.Examples.SimpleReactionCalcHelperMain.o OMCppPhysiolibrary_Physiolibrary.Chemical.Examples.SimpleReactionCalcHelperMain.cpp
clang: error: no such file or directory: 'NOTFOUND'
make: *** [