Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries/ --ompython_omhome=/usr Physiolibrary_Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 3.2.3+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo", uses=false) Using package Physiolibrary with version 2.3.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo) Using package Modelica with version 3.2.3 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 3.2.3+maint.om/package.mo) Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo) Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo) Running command: translateModel(Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Physiolibrary_Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") translateModel(Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-14,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Physiolibrary_Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.0009377/0.0009375, allocations: 102.6 kB / 15.71 MB, free: 460 kB / 14.72 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.0009286/0.0009286, allocations: 175.2 kB / 16.58 MB, free: 6.402 MB / 14.72 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 3.2.3+maint.om/package.mo): time 1.655/1.655, allocations: 205.4 MB / 222.8 MB, free: 5.656 MB / 174.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1238:16-1238:88:writable] Warning: The file was not encoded in UTF-8: "

[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "

Before silumation in "Dymola 2014 FD01" please set e...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.09645/0.09645, allocations: 15.39 MB / 286.4 MB, free: 5.902 MB / 238.1 MB Warning: Ignoring unknown experiment annotation option: __Dymola_Algorithm = "Euler" Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.0005419/0.0005419, allocations: 15.98 kB / 348.3 MB, free: 18.18 MB / 254.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.1222/0.1227, allocations: 51.42 MB / 399.7 MB, free: 14.64 MB / 302.1 MB Notification: Performance of NFInst.instantiate(Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC): time 0.005792/0.1286, allocations: 5.135 MB / 404.9 MB, free: 9.48 MB / 302.1 MB Notification: Performance of NFInst.instExpressions: time 0.008833/0.1375, allocations: 5.496 MB / 410.4 MB, free: 3.969 MB / 302.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0008554/0.1384, allocations: 27.75 kB / 410.4 MB, free: 3.941 MB / 302.1 MB Notification: Performance of NFTyping.typeComponents: time 0.0003925/0.1388, allocations: 138.8 kB / 410.5 MB, free: 3.805 MB / 302.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.UnitConversions.findUnit‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.UnitConversions.findUnit‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.UnitConversions.findUnit‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.UnitConversions.findUnit‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.UnitConversions.findUnit‘. Notification: Performance of NFTyping.typeBindings: time 0.002609/0.1414, allocations: 0.7892 MB / 411.3 MB, free: 3.012 MB / 302.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyRHm.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyRHm.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.OxyTHm.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.DeoxyTHm.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.oxygen_unbound.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘. Notification: Performance of NFTyping.typeClassSections: time 0.002552/0.1439, allocations: 0.8226 MB / 412.2 MB, free: 2.188 MB / 302.1 MB Notification: Performance of NFFlatten.flatten: time 0.003504/0.1475, allocations: 3.167 MB / 415.3 MB, free: 15.01 MB / 318.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.00143/0.1489, allocations: 0.9353 MB / 416.3 MB, free: 14.05 MB / 318.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.001846/0.1508, allocations: 0.8867 MB / 417.1 MB, free: 13.16 MB / 318.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.001658/0.1524, allocations: 1.268 MB / 418.4 MB, free: 11.88 MB / 318.1 MB Notification: Performance of NFPackage.collectConstants: time 0.0001826/0.1526, allocations: 80 kB / 418.5 MB, free: 11.8 MB / 318.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.0003078/0.1529, allocations: 88 kB / 418.6 MB, free: 11.72 MB / 318.1 MB Notification: Performance of NFScalarize.scalarize: time 0.0005425/0.1535, allocations: 0.5213 MB / 419.1 MB, free: 11.2 MB / 318.1 MB Notification: Performance of NFVerifyModel.verify: time 0.0005707/0.1541, allocations: 460.3 kB / 419.5 MB, free: 10.74 MB / 318.1 MB Notification: Performance of NFConvertDAE.convert: time 0.0023/0.1564, allocations: 2.077 MB / 421.6 MB, free: 8.656 MB / 318.1 MB Notification: Performance of FrontEnd - DAE generated: time 6.412e-06/0.1564, allocations: 0 / 421.6 MB, free: 8.656 MB / 318.1 MB Notification: Performance of FrontEnd: time 2.604e-06/0.1564, allocations: 0 / 421.6 MB, free: 8.656 MB / 318.1 MB Notification: Performance of Transformations before backend: time 7.865e-05/0.1565, allocations: 0 / 421.6 MB, free: 8.656 MB / 318.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 387 * Number of variables: 387 Notification: Performance of Generate backend data structure: time 0.007105/0.1636, allocations: 3.106 MB / 424.7 MB, free: 5.484 MB / 318.1 MB Notification: Performance of prepare preOptimizeDAE: time 4.567e-05/0.1637, allocations: 12.02 kB / 424.7 MB, free: 5.473 MB / 318.1 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0005212/0.1642, allocations: 288.4 kB / 425 MB, free: 5.188 MB / 318.1 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.002806/0.167, allocations: 1.601 MB / 426.6 MB, free: 3.516 MB / 318.1 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001017/0.1671, allocations: 123 kB / 426.7 MB, free: 3.395 MB / 318.1 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002287/0.1674, allocations: 163.9 kB / 426.9 MB, free: 3.234 MB / 318.1 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.003461/0.1708, allocations: 2.206 MB / 429.1 MB, free: 0.9766 MB / 318.1 MB Notification: Performance of preOpt findStateOrder (simulation): time 2.66e-05/0.1709, allocations: 0 / 429.1 MB, free: 0.9766 MB / 318.1 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001351/0.171, allocations: 64 kB / 429.2 MB, free: 0.9141 MB / 318.1 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.371e-05/0.1711, allocations: 62.97 kB / 429.2 MB, free: 0.8516 MB / 318.1 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.2439/0.415, allocations: 2.009 MB / 431.2 MB, free: 33.74 MB / 318.1 MB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01605/0.4311, allocations: 7.3 MB / 438.5 MB, free: 31.71 MB / 318.1 MB Notification: Performance of preOpt comSubExp (simulation): time 0.00238/0.4335, allocations: 1.603 MB / 440.1 MB, free: 31.11 MB / 318.1 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.001391/0.4349, allocations: 0.9677 MB / 441.1 MB, free: 30.79 MB / 318.1 MB Notification: Performance of preOpt evalFunc (simulation): time 8.203e-05/0.435, allocations: 17.25 kB / 441.1 MB, free: 30.79 MB / 318.1 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.626e-05/0.435, allocations: 57.88 kB / 441.2 MB, free: 30.73 MB / 318.1 MB Notification: Performance of pre-optimization done (n=118): time 3.216e-06/0.435, allocations: 0 / 441.2 MB, free: 30.73 MB / 318.1 MB Notification: Performance of matching and sorting (n=183): time 0.08217/0.5172, allocations: 29.35 MB / 470.5 MB, free: 6.703 MB / 318.1 MB Notification: Performance of inlineWhenForInitialization (initialization): time 8.448e-05/0.5173, allocations: 253.3 kB / 470.8 MB, free: 6.398 MB / 318.1 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002982/0.5203, allocations: 2.428 MB / 473.2 MB, free: 3.949 MB / 318.1 MB Notification: Performance of collectPreVariables (initialization): time 0.0003654/0.5207, allocations: 61.7 kB / 473.3 MB, free: 3.883 MB / 318.1 MB Notification: Performance of collectInitialEqns (initialization): time 0.0006287/0.5213, allocations: 1.074 MB / 474.3 MB, free: 2.801 MB / 318.1 MB Notification: Performance of collectInitialBindings (initialization): time 0.0005266/0.5219, allocations: 0.6182 MB / 475 MB, free: 2.188 MB / 318.1 MB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001473/0.522, allocations: 52 kB / 475 MB, free: 2.137 MB / 318.1 MB Notification: Performance of setup shared object (initialization): time 0.0001282/0.5222, allocations: 406.5 kB / 475.4 MB, free: 1.734 MB / 318.1 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.002131/0.5243, allocations: 1.729 MB / 477.1 MB, free: 0 / 318.1 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.003351/0.5277, allocations: 2.378 MB / 479.5 MB, free: 13.34 MB / 334.1 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.002979/0.5307, allocations: 2.024 MB / 481.5 MB, free: 11.32 MB / 334.1 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.011e-05/0.5307, allocations: 4 kB / 481.5 MB, free: 11.32 MB / 334.1 MB Notification: Performance of matching and sorting (n=291) (initialization): time 0.02163/0.5523, allocations: 8.628 MB / 490.2 MB, free: 2.668 MB / 334.1 MB Notification: Performance of prepare postOptimizeDAE: time 5.984e-05/0.5524, allocations: 15.98 kB / 490.2 MB, free: 2.652 MB / 334.1 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.147e-05/0.5525, allocations: 25.06 kB / 490.2 MB, free: 2.629 MB / 334.1 MB Notification: Performance of postOpt tearingSystem (initialization): time 0.01643/0.5689, allocations: 5.257 MB / 495.5 MB, free: 13.38 MB / 350.1 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001902/0.5709, allocations: 459.3 kB / 495.9 MB, free: 12.93 MB / 350.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.04125/0.6121, allocations: 23.41 MB / 0.5072 GB, free: 5.27 MB / 366.1 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.003086/0.6153, allocations: 283.4 kB / 0.5074 GB, free: 4.992 MB / 366.1 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0002754/0.6156, allocations: 92 kB / 0.5075 GB, free: 4.902 MB / 366.1 MB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 89 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (205): * Single equations (assignments): 203 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 2 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 1 {(8,34.4%) 36} * Non-linear torn systems: 1 {10 34} Notification: Performance of prepare postOptimizeDAE: time 0.001783/0.6174, allocations: 0.8637 MB / 0.5084 GB, free: 4.027 MB / 366.1 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0005753/0.618, allocations: 248.8 kB / 0.5086 GB, free: 3.781 MB / 366.1 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.001061/0.619, allocations: 433.7 kB / 0.509 GB, free: 3.352 MB / 366.1 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.306e-05/0.6191, allocations: 19.98 kB / 0.509 GB, free: 3.332 MB / 366.1 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 4.852e-05/0.6191, allocations: 19.94 kB / 0.509 GB, free: 3.312 MB / 366.1 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.753e-05/0.6192, allocations: 7.969 kB / 0.509 GB, free: 3.305 MB / 366.1 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.02815/0.6473, allocations: 12.3 MB / 0.5211 GB, free: 6.785 MB / 382.1 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.2e-05/0.6474, allocations: 16 kB / 0.5211 GB, free: 6.77 MB / 382.1 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008878/0.6483, allocations: 231.6 kB / 0.5213 GB, free: 6.543 MB / 382.1 MB Notification: Performance of postOpt tearingSystem (simulation): time 0.01586/0.6642, allocations: 4.998 MB / 0.5262 GB, free: 1.543 MB / 382.1 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0003929/0.6646, allocations: 59.98 kB / 0.5262 GB, free: 1.484 MB / 382.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.03999/0.7046, allocations: 22.32 MB / 0.548 GB, free: 10.88 MB / 414.1 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.485e-05/0.7047, allocations: 23.94 kB / 0.548 GB, free: 10.86 MB / 414.1 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.02543/0.7301, allocations: 10.83 MB / 0.5586 GB, free: 15.8 MB / 430.1 MB Notification: Performance of postOpt removeConstants (simulation): time 0.00239/0.7326, allocations: 0.6734 MB / 0.5593 GB, free: 15.11 MB / 430.1 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0004456/0.7331, allocations: 59.97 kB / 0.5593 GB, free: 15.05 MB / 430.1 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.002106/0.7352, allocations: 235.5 kB / 0.5596 GB, free: 14.82 MB / 430.1 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0009493/0.7362, allocations: 249.5 kB / 0.5598 GB, free: 14.57 MB / 430.1 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001669/0.7363, allocations: 68 kB / 0.5599 GB, free: 14.51 MB / 430.1 MB Notification: Performance of sorting global known variables: time 0.003061/0.7394, allocations: 1.652 MB / 0.5615 GB, free: 12.84 MB / 430.1 MB Notification: Performance of sort global known variables: time 1.2e-07/0.7394, allocations: 0 / 0.5615 GB, free: 12.84 MB / 430.1 MB Notification: Performance of remove unused functions: time 0.004603/0.744, allocations: 1.016 MB / 0.5625 GB, free: 11.83 MB / 430.1 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 72 * Number of states: 7 (totalHb.state[1],T0_in_T.state[3],T0_in_T.state[2],T0_in_T.state[1],R0_in_R.state[3],R0_in_R.state[2],R0_in_R.state[1]) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (111): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 2 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 1 {(8,34.4%) 36} * Non-linear torn systems: 1 {10 34} Notification: Performance of Backend phase and start with SimCode phase: time 0.0003721/0.7444, allocations: 170.8 kB / 0.5626 GB, free: 11.65 MB / 430.1 MB Notification: Performance of simCode: created initialization part: time 0.01181/0.7562, allocations: 5.378 MB / 0.5679 GB, free: 6.242 MB / 430.1 MB Notification: Performance of simCode: created event and clocks part: time 1.832e-05/0.7563, allocations: 4 kB / 0.5679 GB, free: 6.238 MB / 430.1 MB Notification: Performance of simCode: created simulation system equations: time 0.00832/0.7646, allocations: 3.326 MB / 0.5711 GB, free: 2.887 MB / 430.1 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.004044/0.7687, allocations: 0.6123 MB / 0.5717 GB, free: 2.277 MB / 430.1 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.01058/0.7794, allocations: 6.92 MB / 0.5785 GB, free: 11.11 MB / 446.1 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.00224/0.7817, allocations: 2.085 MB / 0.5805 GB, free: 8.988 MB / 446.1 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0007585/0.7824, allocations: 155.4 kB / 0.5807 GB, free: 8.836 MB / 446.1 MB Notification: Performance of SimCode: time 1.633e-06/0.7825, allocations: 0 / 0.5807 GB, free: 8.836 MB / 446.1 MB Notification: Performance of Templates: time 0.3071/1.09, allocations: 64.72 MB / 0.6439 GB, free: 107.6 MB / 446.1 MB make -j1 -f Physiolibrary_Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.makefile make -j1 -f Physiolibrary_Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.makefile clang++ NOTFOUND -Winvalid-pch -O0 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DUSE_DGESV -DUSE_LOGGER -DOMC_BUILD -DUSE_THREAD -DSUNDIALS_MAJOR_VERSION=5 -DSUNDIALS_MINOR_VERSION=4 -DPMC_USE_SUNDIALS -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/c/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPhysiolibrary_Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWCCalcHelperMain.o OMCppPhysiolibrary_Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWCCalcHelperMain.cpp clang: error: no such file or directory: 'NOTFOUND' make: *** [: OMCppPhysiolibrary_Physiolibrary.Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWCCalcHelperMain.o] Error 1