[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "
Before silumation in "Dymola 2014 FD01" please set e...".
Defaulting to 7-bit ASCII with unknown characters replaced by '?'.
To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY").
To change it in a package: add a file package.encoding at the top-level.
Note: The Modelica Language Specification only allows files encoded in UTF-8.
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.1074/0.1074, allocations: 15.4 MB / 286.4 MB, free: 5.887 MB / 238.1 MB
Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.0006538/0.0006539, allocations: 20 kB / 348.3 MB, free: 18.2 MB / 254.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1436/0.1443, allocations: 51.41 MB / 399.7 MB, free: 14.67 MB / 302.1 MB
Notification: Performance of NFInst.instantiate(Physiolibrary.Chemical.Examples.ExothermicReaction): time 0.003134/0.1475, allocations: 2.463 MB / 402.2 MB, free: 12.2 MB / 302.1 MB
Notification: Performance of NFInst.instExpressions: time 0.004385/0.1519, allocations: 2.682 MB / 404.9 MB, free: 9.504 MB / 302.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.000256/0.1522, allocations: 7.938 kB / 404.9 MB, free: 9.496 MB / 302.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.0001969/0.1524, allocations: 35.7 kB / 404.9 MB, free: 9.461 MB / 302.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.ExothermicReaction.A.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.ExothermicReaction.A.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.ExothermicReaction.A.Utilities.UnitConversions.findUnit‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:6137:6-6153:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.ExothermicReaction.B.Utilities.UnitConversions.findUnit‘ contains a call to impure function ‘Modelica.Utilities.Streams.print‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5568:15-5660:17:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.ExothermicReaction.B.Utilities.readReal‘ contains a call to impure function ‘Physiolibrary.Chemical.Examples.ExothermicReaction.B.Utilities.UnitConversions.findUnit‘.
Notification: Performance of NFTyping.typeBindings: time 0.001169/0.1536, allocations: 314.6 kB / 405.2 MB, free: 9.152 MB / 302.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.ExothermicReaction.A.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.ExothermicReaction.A.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5714:15-5735:18:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.ExothermicReaction.B.Utilities.writeReal‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Types.mo:5776:15-5812:24:writable] Warning: Pure function ‘Physiolibrary.Chemical.Examples.ExothermicReaction.B.Utilities.writeComparison‘ contains a call to impure function ‘Modelica.Utilities.Files.createDirectory‘.
Notification: Performance of NFTyping.typeClassSections: time 0.001077/0.1547, allocations: 355.3 kB / 405.6 MB, free: 8.805 MB / 302.1 MB
Notification: Performance of NFFlatten.flatten: time 0.0003834/0.155, allocations: 322.5 kB / 405.9 MB, free: 8.488 MB / 302.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001819/0.1552, allocations: 56.64 kB / 405.9 MB, free: 8.434 MB / 302.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.000117/0.1554, allocations: 91.59 kB / 406 MB, free: 8.344 MB / 302.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002145/0.1556, allocations: 123.4 kB / 406.1 MB, free: 8.223 MB / 302.1 MB
Notification: Performance of NFPackage.collectConstants: time 2.462e-05/0.1556, allocations: 8 kB / 406.2 MB, free: 8.215 MB / 302.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 3.372e-05/0.1557, allocations: 8 kB / 406.2 MB, free: 8.207 MB / 302.1 MB
Notification: Performance of NFScalarize.scalarize: time 6.707e-05/0.1557, allocations: 43.78 kB / 406.2 MB, free: 8.164 MB / 302.1 MB
Notification: Performance of NFVerifyModel.verify: time 7.669e-05/0.1558, allocations: 69.58 kB / 406.3 MB, free: 8.09 MB / 302.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.0001981/0.156, allocations: 175.8 kB / 406.4 MB, free: 7.918 MB / 302.1 MB
Notification: Performance of FrontEnd - DAE generated: time 8.456e-06/0.156, allocations: 4 kB / 406.4 MB, free: 7.914 MB / 302.1 MB
Notification: Performance of FrontEnd: time 1.343e-06/0.156, allocations: 3.938 kB / 406.4 MB, free: 7.91 MB / 302.1 MB
Notification: Performance of Transformations before backend: time 4.94e-06/0.1561, allocations: 4 kB / 406.5 MB, free: 7.906 MB / 302.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
* Number of equations: 35
* Number of variables: 35
Notification: Performance of Generate backend data structure: time 0.0008046/0.1569, allocations: 0.4982 MB / 407 MB, free: 7.359 MB / 302.1 MB
Notification: Performance of prepare preOptimizeDAE: time 3.834e-05/0.1569, allocations: 8.031 kB / 407 MB, free: 7.352 MB / 302.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 6.455e-05/0.157, allocations: 39.56 kB / 407 MB, free: 7.312 MB / 302.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003775/0.1574, allocations: 278.4 kB / 407.3 MB, free: 7.004 MB / 302.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.553e-05/0.1574, allocations: 15.86 kB / 407.3 MB, free: 6.988 MB / 302.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 4.045e-05/0.1574, allocations: 16 kB / 407.3 MB, free: 6.973 MB / 302.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002464/0.1577, allocations: 137.6 kB / 407.4 MB, free: 6.832 MB / 302.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.28e-05/0.1577, allocations: 0 / 407.4 MB, free: 6.832 MB / 302.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.005e-05/0.1577, allocations: 8 kB / 407.4 MB, free: 6.824 MB / 302.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 8.045e-06/0.1577, allocations: 4 kB / 407.4 MB, free: 6.82 MB / 302.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001625/0.1579, allocations: 87.89 kB / 407.5 MB, free: 6.734 MB / 302.1 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001058/0.159, allocations: 0.5856 MB / 408.1 MB, free: 6.098 MB / 302.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.00021/0.1592, allocations: 122.5 kB / 408.2 MB, free: 5.969 MB / 302.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001305/0.1593, allocations: 48.83 kB / 408.3 MB, free: 5.918 MB / 302.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 1.293e-05/0.1594, allocations: 4 kB / 408.3 MB, free: 5.914 MB / 302.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.379e-05/0.1594, allocations: 30.56 kB / 408.3 MB, free: 5.875 MB / 302.1 MB
Notification: Performance of pre-optimization done (n=10): time 1.412e-06/0.1594, allocations: 0 / 408.3 MB, free: 5.875 MB / 302.1 MB
Notification: Performance of matching and sorting (n=10): time 0.0003017/0.1597, allocations: 165.3 kB / 408.5 MB, free: 5.707 MB / 302.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.492e-05/0.1598, allocations: 55.41 kB / 408.5 MB, free: 5.641 MB / 302.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003138/0.1601, allocations: 275.3 kB / 408.8 MB, free: 5.355 MB / 302.1 MB
Notification: Performance of collectPreVariables (initialization): time 2.772e-05/0.1601, allocations: 29.7 kB / 408.8 MB, free: 5.32 MB / 302.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0001473/0.1603, allocations: 164.1 kB / 409 MB, free: 5.156 MB / 302.1 MB
Notification: Performance of collectInitialBindings (initialization): time 3.755e-05/0.1603, allocations: 31.55 kB / 409 MB, free: 5.125 MB / 302.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 1.217e-05/0.1603, allocations: 11.88 kB / 409 MB, free: 5.113 MB / 302.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001852/0.1605, allocations: 334.8 kB / 409.4 MB, free: 4.777 MB / 302.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 8.361e-05/0.1606, allocations: 43.91 kB / 409.4 MB, free: 4.734 MB / 302.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001136/0.1607, allocations: 81.12 kB / 409.5 MB, free: 4.637 MB / 302.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0001015/0.1609, allocations: 55.98 kB / 409.5 MB, free: 4.582 MB / 302.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.098e-06/0.1609, allocations: 4 kB / 409.5 MB, free: 4.578 MB / 302.1 MB
Notification: Performance of matching and sorting (n=20) (initialization): time 0.0002743/0.1611, allocations: 193.1 kB / 409.7 MB, free: 4.383 MB / 302.1 MB
Notification: Performance of prepare postOptimizeDAE: time 1.842e-05/0.1612, allocations: 8 kB / 409.7 MB, free: 4.375 MB / 302.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.861e-06/0.1612, allocations: 0 / 409.7 MB, free: 4.375 MB / 302.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.525e-05/0.1612, allocations: 8.156 kB / 409.7 MB, free: 4.367 MB / 302.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000173/0.1614, allocations: 35.92 kB / 409.8 MB, free: 4.332 MB / 302.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 7.193e-06/0.1614, allocations: 0 / 409.8 MB, free: 4.332 MB / 302.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001197/0.1615, allocations: 23.75 kB / 409.8 MB, free: 4.309 MB / 302.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.557e-05/0.1615, allocations: 11.98 kB / 409.8 MB, free: 4.297 MB / 302.1 MB
Notification: Model statistics after passing the back-end for initialization:
* Number of independent subsystems: 6
* Number of states: 0 ()
* Number of discrete variables: 0 ()
* Number of discrete states: 0 ()
* Number of clocked states: 0 ()
* Top-level inputs: 0
Notification: Strong component statistics for initialization (20):
* Single equations (assignments): 20
* Array equations: 0
* Algorithm blocks: 0
* Record equations: 0
* When equations: 0
* If-equations: 0
* Equation systems (linear and non-linear blocks): 0
* Torn equation systems: 0
* Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001381/0.1617, allocations: 138.6 kB / 410 MB, free: 4.152 MB / 302.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 5.042e-05/0.1617, allocations: 27.67 kB / 410 MB, free: 4.125 MB / 302.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 5.63e-05/0.1618, allocations: 29.81 kB / 410 MB, free: 4.098 MB / 302.1 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.186e-06/0.1618, allocations: 8 kB / 410 MB, free: 4.09 MB / 302.1 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.971e-06/0.1618, allocations: 0 / 410 MB, free: 4.09 MB / 302.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.136e-06/0.1618, allocations: 0 / 410 MB, free: 4.09 MB / 302.1 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0003502/0.1622, allocations: 269.5 kB / 410.3 MB, free: 3.777 MB / 302.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 9.72e-07/0.1622, allocations: 0 / 410.3 MB, free: 3.777 MB / 302.1 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001348/0.1623, allocations: 23.98 kB / 410.3 MB, free: 3.754 MB / 302.1 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.034e-06/0.1624, allocations: 0 / 410.3 MB, free: 3.754 MB / 302.1 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.293e-05/0.1624, allocations: 3.953 kB / 410.3 MB, free: 3.75 MB / 302.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.302e-06/0.1624, allocations: 0 / 410.3 MB, free: 3.75 MB / 302.1 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.045e-06/0.1624, allocations: 3.984 kB / 410.3 MB, free: 3.746 MB / 302.1 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0003373/0.1627, allocations: 287.1 kB / 410.6 MB, free: 3.449 MB / 302.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 9.5e-05/0.1628, allocations: 104.8 kB / 410.7 MB, free: 3.328 MB / 302.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.2e-05/0.1629, allocations: 4 kB / 410.7 MB, free: 3.324 MB / 302.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001138/0.163, allocations: 7.953 kB / 410.7 MB, free: 3.316 MB / 302.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 2.648e-05/0.163, allocations: 11.92 kB / 410.7 MB, free: 3.305 MB / 302.1 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 5.22e-06/0.163, allocations: 0 / 410.7 MB, free: 3.305 MB / 302.1 MB
Notification: Performance of sorting global known variables: time 0.0002619/0.1633, allocations: 198 kB / 410.9 MB, free: 3.117 MB / 302.1 MB
Notification: Performance of sort global known variables: time 1.4e-07/0.1633, allocations: 96 / 410.9 MB, free: 3.117 MB / 302.1 MB
Notification: Performance of remove unused functions: time 0.0003546/0.1637, allocations: 59.94 kB / 411 MB, free: 3.059 MB / 302.1 MB
Notification: Model statistics after passing the back-end for simulation:
* Number of independent subsystems: 1
* Number of states: 2 (A.state,B.state)
* Number of discrete variables: 0 ()
* Number of discrete states: 0 ()
* Number of clocked states: 0 ()
* Top-level inputs: 0
Notification: Strong component statistics for simulation (10):
* Single equations (assignments): 10
* Array equations: 0
* Algorithm blocks: 0
* Record equations: 0
* When equations: 0
* If-equations: 0
* Equation systems (linear and non-linear blocks): 0
* Torn equation systems: 0
* Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001143/0.1638, allocations: 95.17 kB / 411.1 MB, free: 2.953 MB / 302.1 MB
Notification: Performance of simCode: created initialization part: time 0.0002233/0.164, allocations: 107.8 kB / 411.2 MB, free: 2.848 MB / 302.1 MB
Notification: Performance of simCode: created event and clocks part: time 2.084e-06/0.1641, allocations: 0 / 411.2 MB, free: 2.848 MB / 302.1 MB
Notification: Performance of simCode: created simulation system equations: time 6.393e-05/0.1641, allocations: 39.98 kB / 411.2 MB, free: 2.809 MB / 302.1 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0005496/0.1647, allocations: 76.64 kB / 411.3 MB, free: 2.734 MB / 302.1 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0007843/0.1655, allocations: 0.5354 MB / 411.8 MB, free: 2.164 MB / 302.1 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004019/0.1659, allocations: 0.7482 MB / 412.6 MB, free: 1.391 MB / 302.1 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 6.812e-05/0.166, allocations: 23.44 kB / 412.6 MB, free: 1.367 MB / 302.1 MB
Notification: Performance of SimCode: time 2.5e-07/0.166, allocations: 0 / 412.6 MB, free: 1.367 MB / 302.1 MB
Notification: Performance of Templates: time 0.005279/0.1712, allocations: 2.962 MB / 415.5 MB, free: 14.4 MB / 318.1 MB
make -j1 -f Physiolibrary_Physiolibrary.Chemical.Examples.ExothermicReaction.makefile
make -j1 -f Physiolibrary_Physiolibrary.Chemical.Examples.ExothermicReaction.makefile clang++ NOTFOUND -Winvalid-pch -O0 -g -DNDEBUG -fPIC -std=c++11 -DBOOST_ALL_DYN_LINK -DUSE_DGESV -DUSE_LOGGER -DOMC_BUILD -DUSE_THREAD -DSUNDIALS_MAJOR_VERSION=5 -DSUNDIALS_MINOR_VERSION=4 -DPMC_USE_SUNDIALS -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I. -I"." -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/c/sundials" -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER -c -o OMCppPhysiolibrary_Physiolibrary.Chemical.Examples.ExothermicReactionCalcHelperMain.o OMCppPhysiolibrary_Physiolibrary.Chemical.Examples.ExothermicReactionCalcHelperMain.cpp
clang: error: no such file or directory: 'NOTFOUND'
make: *** [