Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries/ --ompython_omhome=/usr BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2/package.mo", uses=false)
Using package BioChem with version 1.1.2 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Running command: translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel")
translateModel(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel")
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.0008929/0.0008929, allocations: 100.2 kB / 15.71 MB, free: 452 kB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.0009906/0.0009907, allocations: 176.8 kB / 16.58 MB, free: 6.422 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.505/1.505, allocations: 223.2 MB / 240.6 MB, free: 5.441 MB / 190.1 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2/package.mo): time 0.2873/0.2873, allocations: 12.22 MB / 303.9 MB, free: 1.875 MB / 238.1 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - loaded program: time 0.0003429/0.0003429, allocations: 11.98 kB / 367.5 MB, free: 9.645 MB / 302.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1444/0.1447, allocations: 53.08 MB / 420.6 MB, free: 4.48 MB / 350.1 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel): time 0.3128/0.4576, allocations: 7.749 MB / 428.3 MB, free: 34.77 MB / 350.1 MB
Notification: Performance of NFInst.instExpressions: time 0.009195/0.4669, allocations: 2.352 MB / 430.7 MB, free: 34.3 MB / 350.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001458/0.4683, allocations: 123.2 kB / 430.8 MB, free: 34.3 MB / 350.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.0009369/0.4693, allocations: 305.8 kB / 431.1 MB, free: 34.21 MB / 350.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.001364/0.4707, allocations: 441.5 kB / 431.5 MB, free: 34.02 MB / 350.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.00111/0.4718, allocations: 334.6 kB / 431.9 MB, free: 34.02 MB / 350.1 MB
Notification: Performance of NFFlatten.flatten: time 0.002319/0.4741, allocations: 2.12 MB / 434 MB, free: 33.51 MB / 350.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0016/0.4757, allocations: 0.9886 MB / 435 MB, free: 33.34 MB / 350.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001271/0.477, allocations: 0.6538 MB / 435.6 MB, free: 33.07 MB / 350.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0009218/0.4779, allocations: 0.8027 MB / 436.4 MB, free: 32.67 MB / 350.1 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002034/0.4782, allocations: 115.2 kB / 436.5 MB, free: 32.67 MB / 350.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.0002448/0.4784, allocations: 112.8 kB / 436.7 MB, free: 32.67 MB / 350.1 MB
Notification: Performance of NFScalarize.scalarize: time 0.0002757/0.4787, allocations: 347.5 kB / 437 MB, free: 32.46 MB / 350.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.0004596/0.4792, allocations: 452.9 kB / 437.4 MB, free: 32.2 MB / 350.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.002225/0.4814, allocations: 2.682 MB / 440.1 MB, free: 31.71 MB / 350.1 MB
Notification: Performance of FrontEnd - DAE generated: time 9.017e-06/0.4814, allocations: 3.938 kB / 440.1 MB, free: 31.7 MB / 350.1 MB
Notification: Performance of FrontEnd: time 2.524e-06/0.4814, allocations: 0 / 440.1 MB, free: 31.7 MB / 350.1 MB
Notification: Performance of Transformations before backend: time 4.189e-05/0.4815, allocations: 0.75 kB / 440.1 MB, free: 31.7 MB / 350.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 687
 * Number of variables: 687
Notification: Performance of Generate backend data structure: time 0.003406/0.4849, allocations: 1.929 MB / 442 MB, free: 30.62 MB / 350.1 MB
Notification: Performance of prepare preOptimizeDAE: time 5.114e-05/0.4849, allocations: 9.344 kB / 442.1 MB, free: 30.62 MB / 350.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003526/0.4853, allocations: 230.7 kB / 442.3 MB, free: 30.51 MB / 350.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004013/0.4857, allocations: 410 kB / 442.7 MB, free: 30.14 MB / 350.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0002374/0.486, allocations: 265.9 kB / 442.9 MB, free: 29.98 MB / 350.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002834/0.4863, allocations: 277.9 kB / 443.2 MB, free: 29.88 MB / 350.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.003797/0.4901, allocations: 2.375 MB / 445.6 MB, free: 28.81 MB / 350.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 6.6e-05/0.4901, allocations: 11.28 kB / 445.6 MB, free: 28.8 MB / 350.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001705/0.4903, allocations: 108.2 kB / 445.7 MB, free: 28.72 MB / 350.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.318e-05/0.4904, allocations: 65.44 kB / 445.8 MB, free: 28.72 MB / 350.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002853/0.4932, allocations: 1.677 MB / 447.4 MB, free: 28.11 MB / 350.1 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01042/0.5037, allocations: 8.445 MB / 455.9 MB, free: 23.03 MB / 350.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002046/0.5057, allocations: 1.598 MB / 457.5 MB, free: 22 MB / 350.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0008067/0.5066, allocations: 0.5494 MB / 458 MB, free: 21.75 MB / 350.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 6.282e-05/0.5066, allocations: 21.56 kB / 458.1 MB, free: 21.75 MB / 350.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.465e-05/0.5067, allocations: 46.41 kB / 458.1 MB, free: 21.7 MB / 350.1 MB
Notification: Performance of pre-optimization done (n=139): time 4.078e-06/0.5067, allocations: 0 / 458.1 MB, free: 21.7 MB / 350.1 MB
Notification: Performance of matching and sorting (n=171): time 0.02339/0.5301, allocations: 9.233 MB / 467.3 MB, free: 18.28 MB / 350.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 9.328e-05/0.5302, allocations: 179.7 kB / 467.5 MB, free: 18.09 MB / 350.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005949/0.5308, allocations: 481.6 kB / 468 MB, free: 17.84 MB / 350.1 MB
Notification: Performance of collectPreVariables (initialization): time 7.905e-05/0.5309, allocations: 55.77 kB / 468 MB, free: 17.79 MB / 350.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0006458/0.5316, allocations: 0.9469 MB / 469 MB, free: 17.06 MB / 350.1 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0005299/0.5321, allocations: 0.6352 MB / 469.6 MB, free: 16.56 MB / 350.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 8.083e-05/0.5322, allocations: 40.59 kB / 469.7 MB, free: 16.53 MB / 350.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001917/0.5324, allocations: 410.2 kB / 470.1 MB, free: 16.18 MB / 350.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.00136/0.5338, allocations: 0.656 MB / 470.7 MB, free: 15.91 MB / 350.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001654/0.5354, allocations: 1.19 MB / 471.9 MB, free: 14.9 MB / 350.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001566/0.537, allocations: 0.8558 MB / 472.8 MB, free: 14.44 MB / 350.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.293e-05/0.537, allocations: 7.797 kB / 472.8 MB, free: 14.44 MB / 350.1 MB
Notification: Performance of matching and sorting (n=291) (initialization): time 0.003742/0.5408, allocations: 2.117 MB / 474.9 MB, free: 13.52 MB / 350.1 MB
Notification: Performance of prepare postOptimizeDAE: time 3.622e-05/0.5408, allocations: 12.38 kB / 474.9 MB, free: 13.52 MB / 350.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.102e-05/0.5409, allocations: 19.25 kB / 474.9 MB, free: 13.52 MB / 350.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 5.932e-05/0.5409, allocations: 33.66 kB / 475 MB, free: 13.52 MB / 350.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.002786/0.5437, allocations: 0.6476 MB / 475.6 MB, free: 13.46 MB / 350.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 8.192e-05/0.5438, allocations: 46.28 kB / 475.6 MB, free: 13.45 MB / 350.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0013/0.5451, allocations: 153.5 kB / 475.8 MB, free: 13.39 MB / 350.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001828/0.5453, allocations: 88.31 kB / 475.9 MB, free: 13.37 MB / 350.1 MB
Warning: Assuming fixed start value for the following 41 variables:
         adiposeTissue1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         GlucoseRenalExcretion.E.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         GlucoseRenalExcretion.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         UtilizationMuscleTissue.U_idm.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         UtilizationMuscleTissue.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         adiposeTissue1.adipocyte1.IR_insulin.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c:VARIABLE(min = max(0.0, max(0.0, 0.0)) start = 580000000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         adiposeTissue1.adipocyte1.GlucoseUtilization.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         adiposeTissue1.adipocyte1.PKB_P.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         adiposeTissue1.adipocyte1.PKB.c:VARIABLE(min = max(0.0, max(0.0, 0.0)) start = 16800000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         adiposeTissue1.adipocyte1.IRS1_P.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         adiposeTissue1.adipocyte1.IRS1.c:VARIABLE(min = max(0.0, max(0.0, 0.0)) start = 16100000000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         adiposeTissue1.adipocyte1.IR.c:VARIABLE(min = max(0.0, max(0.0, 0.0)) start = 2340000000000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         adiposeTissue1.adipocyte1.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         BetaCell.Y.c:VARIABLE(min = max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, 0.0))))))) start = 0.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         BetaCell.G_p.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         BetaCell.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         EndogenousGlucoseProduction.I_po.c:VARIABLE(min = max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, 0.0))))))))) start = 3.6 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         EndogenousGlucoseProduction.End.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         EndogenousGlucoseProduction.I_d.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         EndogenousGlucoseProduction.I_1.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         EndogenousGlucoseProduction.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         LiverInsulin.Deg.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         LiverInsulin.I_l.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         LiverInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         GastroIntestinalTract.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         GastroIntestinalTract.Q_sto2.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         GastroIntestinalTract.Q_gut.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         GastroIntestinalTract.Q_sto1.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         GastroIntestinalTract.GlucoseIntake.c:VARIABLE(min = max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, max(0.0, 0.0)))))) start = 78000.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         GastroIntestinalTract.End.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         TissueGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         TissueGlucose.G_t.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         PlasmaGlucose.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         PlasmaGlucose.U_ii.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         PlasmaInsulin.V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         PlasmaInsulin.I_p.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         PlasmaInsulin.Deg.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         UtilizationMuscleTissue.UtilizationReaction.X:VARIABLE(min = 0.0 unit = "mol/l" fixed = true )  type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 86
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (291):
 * Single equations (assignments): 291
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (linear and non-linear blocks): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.001902/0.5472, allocations: 0.6615 MB / 476.5 MB, free: 12.95 MB / 350.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0003321/0.5476, allocations: 94.7 kB / 476.6 MB, free: 12.9 MB / 350.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.003189/0.5508, allocations: 1.445 MB / 478.1 MB, free: 12.26 MB / 350.1 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.44e-05/0.5508, allocations: 18.52 kB / 478.1 MB, free: 12.26 MB / 350.1 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.517e-05/0.5508, allocations: 6.125 kB / 478.1 MB, free: 12.26 MB / 350.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.306e-05/0.5509, allocations: 13.55 kB / 478.1 MB, free: 12.25 MB / 350.1 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.008951/0.5598, allocations: 3.607 MB / 481.7 MB, free: 10.62 MB / 350.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.108e-05/0.5599, allocations: 1.188 kB / 481.7 MB, free: 10.62 MB / 350.1 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.002479/0.5624, allocations: 490.7 kB / 482.2 MB, free: 10.58 MB / 350.1 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.14e-05/0.5624, allocations: 11.42 kB / 482.2 MB, free: 10.58 MB / 350.1 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.000145/0.5626, allocations: 53.64 kB / 482.3 MB, free: 10.55 MB / 350.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.69e-05/0.5626, allocations: 12.92 kB / 482.3 MB, free: 10.55 MB / 350.1 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 5.17e-06/0.5626, allocations: 2.656 kB / 482.3 MB, free: 10.55 MB / 350.1 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.004412/0.567, allocations: 2.52 MB / 484.8 MB, free: 9.23 MB / 350.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0003473/0.5674, allocations: 159.3 kB / 485 MB, free: 9.086 MB / 350.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001698/0.5676, allocations: 48.83 kB / 485 MB, free: 9.055 MB / 350.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0009218/0.5685, allocations: 109.7 kB / 485.1 MB, free: 9.012 MB / 350.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003021/0.5688, allocations: 110.9 kB / 485.2 MB, free: 8.996 MB / 350.1 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001473/0.5689, allocations: 52.22 kB / 485.3 MB, free: 8.984 MB / 350.1 MB
Notification: Performance of sorting global known variables: time 0.0006036/0.5696, allocations: 300.8 kB / 485.6 MB, free: 8.828 MB / 350.1 MB
Notification: Performance of sort global known variables: time 5.51e-07/0.5696, allocations: 0 / 485.6 MB, free: 8.828 MB / 350.1 MB
Notification: Performance of remove unused functions: time 0.002522/0.5721, allocations: 424.3 kB / 486 MB, free: 8.773 MB / 350.1 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 7
 * Number of states: 41 (GastroIntestinalTract.V,GastroIntestinalTract.Q_sto2.n,GastroIntestinalTract.Q_gut.n,GastroIntestinalTract.Q_sto1.n,GastroIntestinalTract.GlucoseIntake.c,GastroIntestinalTract.End.n,TissueGlucose.V,TissueGlucose.G_t.n,PlasmaGlucose.V,PlasmaGlucose.U_ii.n,PlasmaInsulin.V,PlasmaInsulin.I_p.n,PlasmaInsulin.Deg.n,UtilizationMuscleTissue.UtilizationReaction.X,LiverInsulin.V,LiverInsulin.I_l.n,LiverInsulin.Deg.n,EndogenousGlucoseProduction.V,EndogenousGlucoseProduction.I_1.n,EndogenousGlucoseProduction.I_d.n,EndogenousGlucoseProduction.End.n,EndogenousGlucoseProduction.I_po.c,BetaCell.V,BetaCell.G_p.n,BetaCell.Y.c,adiposeTissue1.adipocyte1.V,adiposeTissue1.adipocyte1.IR.c,adiposeTissue1.adipocyte1.IRS1.c,adiposeTissue1.adipocyte1.IRS1_P.n,adiposeTissue1.adipocyte1.PKB.c,adiposeTissue1.adipocyte1.PKB_P.n,adiposeTissue1.adipocyte1.GlucoseUtilization.n,adiposeTissue1.adipocyte1.GLUT4_MEMBRANE.n,adiposeTissue1.adipocyte1.GLUT4_CYTOSOL.c,adiposeTissue1.adipocyte1.IR_insulin.n,V,adiposeTissue1.V,UtilizationMuscleTissue.V,UtilizationMuscleTissue.U_idm.n,GlucoseRenalExcretion.V,GlucoseRenalExcretion.E.n)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (173):
 * Single equations (assignments): 173
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (linear and non-linear blocks): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0002603/0.5724, allocations: 159.6 kB / 486.1 MB, free: 8.645 MB / 350.1 MB
Notification: Performance of simCode: created initialization part: time 0.003666/0.576, allocations: 1.661 MB / 487.8 MB, free: 8.027 MB / 350.1 MB
Notification: Performance of simCode: created event and clocks part: time 4.178e-06/0.5761, allocations: 0 / 487.8 MB, free: 8.027 MB / 350.1 MB
Notification: Performance of simCode: created simulation system equations: time 0.001314/0.5774, allocations: 0.753 MB / 488.6 MB, free: 7.762 MB / 350.1 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001205/0.5786, allocations: 206.4 kB / 488.8 MB, free: 7.676 MB / 350.1 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.009608/0.5882, allocations: 6.208 MB / 495 MB, free: 2.164 MB / 350.1 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0009129/0.5892, allocations: 1.365 MB / 496.3 MB, free: 1 MB / 350.1 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000555/0.5897, allocations: 133.7 kB / 496.5 MB, free: 0.8828 MB / 350.1 MB
Notification: Performance of SimCode: time 1.062e-06/0.5897, allocations: 3.938 kB / 496.5 MB, free: 0.8789 MB / 350.1 MB
Notification: Performance of Templates: time 0.02821/0.6179, allocations: 18.6 MB / 0.503 GB, free: 14.35 MB / 382.1 MB
make -j1 -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.makefile
make -j1 -f BioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModel.makefile clang++  NOTFOUND  -Winvalid-pch -O0 -g -DNDEBUG -fPIC   -std=c++11 -DBOOST_ALL_DYN_LINK   -DUSE_DGESV -DUSE_LOGGER -DOMC_BUILD -DUSE_THREAD -DSUNDIALS_MAJOR_VERSION=5 -DSUNDIALS_MINOR_VERSION=4 -DPMC_USE_SUNDIALS -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/bin/../include/omc/cpp/" -I.  -I"." -I"." -I"/var/lib/jenkins1/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/include/omc/c/sundials"     -DMEASURETIME_PROFILEBLOCKS -DUSE_LOGGER  -c -o OMCppBioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModelCalcHelperMain.o OMCppBioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModelCalcHelperMain.cpp
clang: error: no such file or directory: 'NOTFOUND'
make: *** [<builtin>: OMCppBioChem_BioChem.Examples.GlucoseInsulinModel.GlucoseInsulinModelCalcHelperMain.o] Error 1