[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "
Before silumation in "Dymola 2014 FD01" please set e...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.07344/0.07344, allocations: 15.4 MB / 285.8 MB, free: 5.785 MB / 238.1 MB Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.0005394/0.0005396, allocations: 20 kB / 347.7 MB, free: 18.19 MB / 254.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.08665/0.0872, allocations: 51.41 MB / 399.1 MB, free: 14.66 MB / 302.1 MB Notification: Performance of NFInst.instantiate(Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit): time 0.002556/0.08979, allocations: 2.319 MB / 401.4 MB, free: 12.33 MB / 302.1 MB Notification: Performance of NFInst.instExpressions: time 0.003799/0.09362, allocations: 2.706 MB / 404.1 MB, free: 9.613 MB / 302.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0001912/0.09384, allocations: 11.88 kB / 404.1 MB, free: 9.602 MB / 302.1 MB Notification: Performance of NFTyping.typeComponents: time 0.0001372/0.09399, allocations: 35.75 kB / 404.1 MB, free: 9.566 MB / 302.1 MB Notification: Performance of NFTyping.typeBindings: time 0.0009651/0.09496, allocations: 326.8 kB / 404.5 MB, free: 9.246 MB / 302.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.0008925/0.09587, allocations: 355.2 kB / 404.8 MB, free: 8.898 MB / 302.1 MB Notification: Performance of NFFlatten.flatten: time 0.0003647/0.09624, allocations: 223.4 kB / 405 MB, free: 8.68 MB / 302.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0001312/0.09638, allocations: 44.73 kB / 405.1 MB, free: 8.641 MB / 302.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0001122/0.0965, allocations: 79.7 kB / 405.1 MB, free: 8.562 MB / 302.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.000203/0.09671, allocations: 111.5 kB / 405.2 MB, free: 8.453 MB / 302.1 MB Notification: Performance of NFPackage.collectConstants: time 2.547e-05/0.09675, allocations: 8 kB / 405.3 MB, free: 8.445 MB / 302.1 MB Notification: Performance of NFFlatten.collectFunctions: time 4.026e-05/0.09679, allocations: 12 kB / 405.3 MB, free: 8.434 MB / 302.1 MB Notification: Performance of NFScalarize.scalarize: time 5.391e-05/0.09685, allocations: 43.81 kB / 405.3 MB, free: 8.391 MB / 302.1 MB Notification: Performance of NFVerifyModel.verify: time 5.836e-05/0.09692, allocations: 69.58 kB / 405.4 MB, free: 8.316 MB / 302.1 MB Notification: Performance of NFConvertDAE.convert: time 0.0001626/0.09709, allocations: 151.9 kB / 405.5 MB, free: 8.168 MB / 302.1 MB Notification: Performance of FrontEnd - DAE generated: time 1.814e-06/0.09709, allocations: 0 / 405.5 MB, free: 8.168 MB / 302.1 MB Notification: Performance of FrontEnd: time 1.313e-06/0.0971, allocations: 0 / 405.5 MB, free: 8.168 MB / 302.1 MB Notification: Performance of Transformations before backend: time 6.352e-06/0.09711, allocations: 0 / 405.5 MB, free: 8.168 MB / 302.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 31 * Number of variables: 31 Notification: Performance of Generate backend data structure: time 0.0007253/0.09784, allocations: 0.5021 MB / 406 MB, free: 7.617 MB / 302.1 MB Notification: Performance of prepare preOptimizeDAE: time 3.09e-05/0.09788, allocations: 12.02 kB / 406 MB, free: 7.605 MB / 302.1 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 6.119e-05/0.09795, allocations: 31.58 kB / 406.1 MB, free: 7.574 MB / 302.1 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003814/0.09833, allocations: 290.3 kB / 406.4 MB, free: 7.254 MB / 302.1 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.496e-05/0.09836, allocations: 12 kB / 406.4 MB, free: 7.242 MB / 302.1 MB Notification: Performance of preOpt expandDerOperator (simulation): time 2.825e-05/0.09839, allocations: 12 kB / 406.4 MB, free: 7.23 MB / 302.1 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002181/0.09862, allocations: 145.5 kB / 406.5 MB, free: 7.082 MB / 302.1 MB Notification: Performance of preOpt findStateOrder (simulation): time 1.038e-05/0.09863, allocations: 0 / 406.5 MB, free: 7.082 MB / 302.1 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.486e-05/0.09865, allocations: 4 kB / 406.5 MB, free: 7.078 MB / 302.1 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.592e-06/0.09867, allocations: 4 kB / 406.5 MB, free: 7.074 MB / 302.1 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001588/0.09883, allocations: 95.89 kB / 406.6 MB, free: 6.98 MB / 302.1 MB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.000919/0.09976, allocations: 0.5508 MB / 407.2 MB, free: 6.379 MB / 302.1 MB Notification: Performance of preOpt comSubExp (simulation): time 0.0002002/0.09997, allocations: 126.5 kB / 407.3 MB, free: 6.246 MB / 302.1 MB Notification: Performance of preOpt evalFunc (simulation): time 1.684e-05/0.1, allocations: 4 kB / 407.3 MB, free: 6.242 MB / 302.1 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.792e-05/0.1, allocations: 38.72 kB / 407.3 MB, free: 6.195 MB / 302.1 MB Notification: Performance of pre-optimization done (n=11): time 2.494e-06/0.1, allocations: 0 / 407.3 MB, free: 6.195 MB / 302.1 MB Notification: Performance of matching and sorting (n=11): time 0.0003031/0.1003, allocations: 173.3 kB / 407.5 MB, free: 6.02 MB / 302.1 MB Notification: Performance of inlineWhenForInitialization (initialization): time 3.141e-05/0.1004, allocations: 59.36 kB / 407.6 MB, free: 5.949 MB / 302.1 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002578/0.1006, allocations: 275 kB / 407.8 MB, free: 5.664 MB / 302.1 MB Notification: Performance of collectPreVariables (initialization): time 2.373e-05/0.1007, allocations: 25.7 kB / 407.9 MB, free: 5.633 MB / 302.1 MB Notification: Performance of collectInitialEqns (initialization): time 9.086e-05/0.1008, allocations: 156.2 kB / 408 MB, free: 5.477 MB / 302.1 MB Notification: Performance of collectInitialBindings (initialization): time 3.005e-05/0.1008, allocations: 35.38 kB / 408 MB, free: 5.441 MB / 302.1 MB Notification: Performance of simplifyInitialFunctions (initialization): time 1.026e-05/0.1008, allocations: 4 kB / 408.1 MB, free: 5.438 MB / 302.1 MB Notification: Performance of setup shared object (initialization): time 0.0001336/0.101, allocations: 334.8 kB / 408.4 MB, free: 5.102 MB / 302.1 MB Notification: Performance of preBalanceInitialSystem (initialization): time 8.216e-05/0.1011, allocations: 44.34 kB / 408.4 MB, free: 5.059 MB / 302.1 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001124/0.1012, allocations: 93.86 kB / 408.5 MB, free: 4.949 MB / 302.1 MB Notification: Performance of analyzeInitialSystem (initialization): time 9.832e-05/0.1013, allocations: 51.98 kB / 408.6 MB, free: 4.898 MB / 302.1 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.906e-06/0.1013, allocations: 0 / 408.6 MB, free: 4.898 MB / 302.1 MB Notification: Performance of matching and sorting (n=21) (initialization): time 0.0002731/0.1016, allocations: 201.1 kB / 408.8 MB, free: 4.695 MB / 302.1 MB Notification: Performance of prepare postOptimizeDAE: time 1.276e-05/0.1016, allocations: 11.88 kB / 408.8 MB, free: 4.684 MB / 302.1 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 4.217e-06/0.1016, allocations: 4 kB / 408.8 MB, free: 4.68 MB / 302.1 MB Notification: Performance of postOpt tearingSystem (initialization): time 1.314e-05/0.1016, allocations: 4 kB / 408.8 MB, free: 4.676 MB / 302.1 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001749/0.1018, allocations: 35.98 kB / 408.8 MB, free: 4.641 MB / 302.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 7.053e-06/0.1018, allocations: 4 kB / 408.8 MB, free: 4.637 MB / 302.1 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001316/0.1019, allocations: 27.78 kB / 408.8 MB, free: 4.609 MB / 302.1 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.289e-05/0.102, allocations: 8 kB / 408.9 MB, free: 4.602 MB / 302.1 MB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 6 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (21): * Single equations (assignments): 21 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0001092/0.1021, allocations: 137.9 kB / 409 MB, free: 4.457 MB / 302.1 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 4.072e-05/0.1021, allocations: 19.72 kB / 409 MB, free: 4.438 MB / 302.1 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 4.647e-05/0.1022, allocations: 29.78 kB / 409 MB, free: 4.41 MB / 302.1 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.803e-06/0.1022, allocations: 0 / 409 MB, free: 4.41 MB / 302.1 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 4.078e-06/0.1022, allocations: 4 kB / 409 MB, free: 4.406 MB / 302.1 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.208e-06/0.1022, allocations: 3.984 kB / 409 MB, free: 4.402 MB / 302.1 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0002751/0.1025, allocations: 273.4 kB / 409.3 MB, free: 4.086 MB / 302.1 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.302e-06/0.1025, allocations: 0 / 409.3 MB, free: 4.086 MB / 302.1 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001289/0.1026, allocations: 23.92 kB / 409.3 MB, free: 4.062 MB / 302.1 MB Notification: Performance of postOpt tearingSystem (simulation): time 2.545e-06/0.1026, allocations: 0 / 409.3 MB, free: 4.062 MB / 302.1 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.108e-05/0.1027, allocations: 12 kB / 409.3 MB, free: 4.051 MB / 302.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.613e-06/0.1027, allocations: 0 / 409.3 MB, free: 4.051 MB / 302.1 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.31e-07/0.1027, allocations: 0 / 409.3 MB, free: 4.051 MB / 302.1 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.000325/0.103, allocations: 299.4 kB / 409.6 MB, free: 3.742 MB / 302.1 MB Notification: Performance of postOpt removeConstants (simulation): time 9.077e-05/0.1031, allocations: 104.8 kB / 409.7 MB, free: 3.621 MB / 302.1 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.243e-05/0.1031, allocations: 8 kB / 409.7 MB, free: 3.613 MB / 302.1 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000117/0.1033, allocations: 0 / 409.7 MB, free: 3.613 MB / 302.1 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 2.434e-05/0.1033, allocations: 12.05 kB / 409.8 MB, free: 3.602 MB / 302.1 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.872e-06/0.1033, allocations: 4 kB / 409.8 MB, free: 3.598 MB / 302.1 MB Notification: Performance of sorting global known variables: time 0.0001618/0.1035, allocations: 190 kB / 410 MB, free: 3.418 MB / 302.1 MB Notification: Performance of sort global known variables: time 1.4e-07/0.1035, allocations: 3.938 kB / 410 MB, free: 3.414 MB / 302.1 MB Notification: Performance of remove unused functions: time 0.0002729/0.1038, allocations: 47.94 kB / 410 MB, free: 3.367 MB / 302.1 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 2 (A.state,B.state) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (11): * Single equations (assignments): 11 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 8.715e-05/0.1039, allocations: 103.2 kB / 410.1 MB, free: 3.254 MB / 302.1 MB Notification: Performance of simCode: created initialization part: time 0.0001961/0.1041, allocations: 107.9 kB / 410.2 MB, free: 3.148 MB / 302.1 MB Notification: Performance of simCode: created event and clocks part: time 3.075e-06/0.1041, allocations: 4.312 kB / 410.2 MB, free: 3.145 MB / 302.1 MB Notification: Performance of simCode: created simulation system equations: time 7.763e-05/0.1042, allocations: 59.89 kB / 410.3 MB, free: 3.086 MB / 302.1 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0003339/0.1045, allocations: 56.81 kB / 410.3 MB, free: 3.027 MB / 302.1 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0006496/0.1052, allocations: 0.5103 MB / 410.8 MB, free: 2.488 MB / 302.1 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003056/0.1055, allocations: 0.7638 MB / 411.6 MB, free: 1.699 MB / 302.1 MB Notification: Performance of simCode: alias equations: time 0.0001424/0.1056, allocations: 42.25 kB / 411.6 MB, free: 1.66 MB / 302.1 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 5.518e-05/0.1057, allocations: 23.44 kB / 411.7 MB, free: 1.637 MB / 302.1 MB Notification: Performance of SimCode: time 3.81e-07/0.1057, allocations: 0 / 411.7 MB, free: 1.637 MB / 302.1 MB Notification: Performance of Templates: time 0.00507/0.1108, allocations: 2.377 MB / 414 MB, free: 15.26 MB / 318.1 MB make -j1 -f Physiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.makefile Environment - environmentSimulation: (rm -f Physiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.pipe ; mkfifo Physiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.pipe ; head -c 1048576 < Physiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.pipe >> ../files/Physiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.sim & ./Physiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit -abortSlowSimulation -alarm=480 -lv LOG_STATS > Physiolibrary_Physiolibrary.SteadyStates.Examples.SimpleReaction_NormalInit.pipe 2>&1) Environment - environmentSimulation: