[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "
Before silumation in "Dymola 2014 FD01" please set e...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.07595/0.07595, allocations: 15.39 MB / 285.8 MB, free: 5.918 MB / 238.1 MB Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.0005471/0.0005472, allocations: 20 kB / 347.6 MB, free: 18.22 MB / 254.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.08293/0.08349, allocations: 51.41 MB / 399.1 MB, free: 14.7 MB / 302.1 MB Notification: Performance of NFInst.instantiate(Physiolibrary.SteadyStates.Examples.Cells_SteadyState): time 0.003151/0.08669, allocations: 2.68 MB / 401.7 MB, free: 12 MB / 302.1 MB Notification: Performance of NFInst.instExpressions: time 0.006169/0.0929, allocations: 4.301 MB / 406 MB, free: 7.688 MB / 302.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003988/0.09335, allocations: 11.88 kB / 406 MB, free: 7.676 MB / 302.1 MB Notification: Performance of NFTyping.typeComponents: time 0.0002049/0.09357, allocations: 51.61 kB / 406.1 MB, free: 7.625 MB / 302.1 MB Notification: Performance of NFTyping.typeBindings: time 0.001671/0.09525, allocations: 0.5372 MB / 406.6 MB, free: 7.086 MB / 302.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.001706/0.09697, allocations: 0.608 MB / 407.2 MB, free: 6.477 MB / 302.1 MB Notification: Performance of NFFlatten.flatten: time 0.0007117/0.0977, allocations: 367.1 kB / 407.6 MB, free: 6.117 MB / 302.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0001869/0.09789, allocations: 85.36 kB / 407.7 MB, free: 6.027 MB / 302.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0001331/0.09803, allocations: 127.4 kB / 407.8 MB, free: 5.902 MB / 302.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.0002893/0.09833, allocations: 151.3 kB / 408 MB, free: 5.754 MB / 302.1 MB Notification: Performance of NFPackage.collectConstants: time 2.825e-05/0.09837, allocations: 12 kB / 408 MB, free: 5.742 MB / 302.1 MB Notification: Performance of NFFlatten.collectFunctions: time 4.007e-05/0.09841, allocations: 12 kB / 408 MB, free: 5.73 MB / 302.1 MB Notification: Performance of NFScalarize.scalarize: time 9.796e-05/0.09852, allocations: 83.7 kB / 408.1 MB, free: 5.648 MB / 302.1 MB Notification: Performance of NFVerifyModel.verify: time 7.777e-05/0.0986, allocations: 97.52 kB / 408.2 MB, free: 5.547 MB / 302.1 MB Notification: Performance of NFConvertDAE.convert: time 0.0002385/0.09885, allocations: 247.6 kB / 408.4 MB, free: 5.305 MB / 302.1 MB Notification: Performance of FrontEnd - DAE generated: time 2.264e-06/0.09886, allocations: 0 / 408.4 MB, free: 5.305 MB / 302.1 MB Notification: Performance of FrontEnd: time 3.055e-06/0.09887, allocations: 0 / 408.4 MB, free: 5.305 MB / 302.1 MB Notification: Performance of Transformations before backend: time 6.112e-06/0.09888, allocations: 3.938 kB / 408.4 MB, free: 5.301 MB / 302.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 56 * Number of variables: 56 Notification: Performance of Generate backend data structure: time 0.0008445/0.09973, allocations: 0.592 MB / 409 MB, free: 4.66 MB / 302.1 MB Notification: Performance of prepare preOptimizeDAE: time 3.457e-05/0.09977, allocations: 8.031 kB / 409 MB, free: 4.652 MB / 302.1 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 6.711e-05/0.09985, allocations: 51.39 kB / 409.1 MB, free: 4.602 MB / 302.1 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004769/0.1003, allocations: 353 kB / 409.4 MB, free: 4.215 MB / 302.1 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.237e-05/0.1004, allocations: 24.56 kB / 409.4 MB, free: 4.188 MB / 302.1 MB Notification: Performance of preOpt expandDerOperator (simulation): time 4.241e-05/0.1004, allocations: 24 kB / 409.4 MB, free: 4.164 MB / 302.1 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004656/0.1009, allocations: 253.2 kB / 409.7 MB, free: 3.895 MB / 302.1 MB Notification: Performance of preOpt findStateOrder (simulation): time 1.277e-05/0.1009, allocations: 0 / 409.7 MB, free: 3.895 MB / 302.1 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.395e-05/0.1009, allocations: 15.94 kB / 409.7 MB, free: 3.879 MB / 302.1 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 9.648e-06/0.1009, allocations: 11.95 kB / 409.7 MB, free: 3.867 MB / 302.1 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002877/0.1012, allocations: 181.2 kB / 409.9 MB, free: 3.691 MB / 302.1 MB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001391/0.1026, allocations: 0.9322 MB / 410.8 MB, free: 2.699 MB / 302.1 MB Notification: Performance of preOpt comSubExp (simulation): time 0.0002427/0.1029, allocations: 206.4 kB / 411 MB, free: 2.461 MB / 302.1 MB Notification: Performance of preOpt evalFunc (simulation): time 1.46e-05/0.1029, allocations: 0 / 411 MB, free: 2.461 MB / 302.1 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.955e-05/0.103, allocations: 42.56 kB / 411.1 MB, free: 2.41 MB / 302.1 MB Notification: Performance of pre-optimization done (n=14): time 1.342e-06/0.103, allocations: 0 / 411.1 MB, free: 2.41 MB / 302.1 MB Notification: Performance of matching and sorting (n=24): time 0.002659/0.1056, allocations: 0.9812 MB / 412.1 MB, free: 1.406 MB / 302.1 MB Notification: Performance of inlineWhenForInitialization (initialization): time 6.438e-05/0.1057, allocations: 140.6 kB / 412.2 MB, free: 1.238 MB / 302.1 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004106/0.1061, allocations: 381.9 kB / 412.6 MB, free: 0.8594 MB / 302.1 MB Notification: Performance of collectPreVariables (initialization): time 2.445e-05/0.1062, allocations: 29.7 kB / 412.6 MB, free: 0.8242 MB / 302.1 MB Notification: Performance of collectInitialEqns (initialization): time 0.0001322/0.1063, allocations: 220.3 kB / 412.8 MB, free: 0.6055 MB / 302.1 MB Notification: Performance of collectInitialBindings (initialization): time 6.169e-05/0.1064, allocations: 82.84 kB / 412.9 MB, free: 0.5234 MB / 302.1 MB Notification: Performance of simplifyInitialFunctions (initialization): time 1.559e-05/0.1064, allocations: 8 kB / 412.9 MB, free: 0.5156 MB / 302.1 MB Notification: Performance of setup shared object (initialization): time 0.0001158/0.1065, allocations: 350.8 kB / 413.2 MB, free: 168 kB / 302.1 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001443/0.1067, allocations: 95.94 kB / 413.3 MB, free: 72 kB / 302.1 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002233/0.1069, allocations: 229 kB / 413.6 MB, free: 15.79 MB / 318.1 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.0001938/0.1071, allocations: 135.9 kB / 413.7 MB, free: 15.65 MB / 318.1 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.525e-06/0.1071, allocations: 0 / 413.7 MB, free: 15.65 MB / 318.1 MB Notification: Performance of matching and sorting (n=44) (initialization): time 0.001206/0.1083, allocations: 0.5897 MB / 414.3 MB, free: 15.04 MB / 318.1 MB Notification: Performance of prepare postOptimizeDAE: time 1.763e-05/0.1084, allocations: 4 kB / 414.3 MB, free: 15.04 MB / 318.1 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.917e-06/0.1084, allocations: 8 kB / 414.3 MB, free: 15.03 MB / 318.1 MB Notification: Performance of postOpt tearingSystem (initialization): time 0.000966/0.1093, allocations: 263.6 kB / 414.5 MB, free: 14.76 MB / 318.1 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001277/0.1095, allocations: 39.92 kB / 414.6 MB, free: 14.72 MB / 318.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.005756/0.1152, allocations: 6.245 MB / 420.8 MB, free: 7.953 MB / 318.1 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002486/0.1155, allocations: 23.84 kB / 420.9 MB, free: 7.93 MB / 318.1 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.633e-05/0.1156, allocations: 19.98 kB / 420.9 MB, free: 7.91 MB / 318.1 MB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 20 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (28): * Single equations (assignments): 24 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 4 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 2 {(2,100.0%) 3,(2,100.0%) 3} * Non-linear torn systems: 2 {2 3,2 3} Notification: Performance of prepare postOptimizeDAE: time 0.0001888/0.1157, allocations: 173.8 kB / 421 MB, free: 7.73 MB / 318.1 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 8.658e-05/0.1158, allocations: 43.42 kB / 421.1 MB, free: 7.688 MB / 318.1 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.553e-05/0.1159, allocations: 55.17 kB / 421.1 MB, free: 7.629 MB / 318.1 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 4.889e-06/0.116, allocations: 7.984 kB / 421.1 MB, free: 7.621 MB / 318.1 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 8.116e-06/0.116, allocations: 4 kB / 421.2 MB, free: 7.617 MB / 318.1 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.777e-06/0.116, allocations: 0 / 421.2 MB, free: 7.617 MB / 318.1 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0005923/0.1166, allocations: 393.4 kB / 421.5 MB, free: 7.184 MB / 318.1 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.706e-06/0.1166, allocations: 0 / 421.5 MB, free: 7.184 MB / 318.1 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 4.906e-05/0.1166, allocations: 8 kB / 421.5 MB, free: 7.176 MB / 318.1 MB Notification: Performance of postOpt tearingSystem (simulation): time 0.0009148/0.1176, allocations: 247.2 kB / 421.8 MB, free: 6.922 MB / 318.1 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.874e-05/0.1176, allocations: 11.94 kB / 421.8 MB, free: 6.91 MB / 318.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.005355/0.123, allocations: 6.222 MB / 428 MB, free: 160 kB / 318.1 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.764e-06/0.123, allocations: 0 / 428 MB, free: 160 kB / 318.1 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.1463/0.2693, allocations: 0.8525 MB / 428.9 MB, free: 34.16 MB / 318.1 MB Notification: Performance of postOpt removeConstants (simulation): time 0.0001557/0.2695, allocations: 139.4 kB / 429 MB, free: 34.06 MB / 318.1 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.588e-05/0.2695, allocations: 9.047 kB / 429 MB, free: 34.06 MB / 318.1 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002481/0.2698, allocations: 6.594 kB / 429 MB, free: 34.06 MB / 318.1 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 9.674e-05/0.2699, allocations: 33.78 kB / 429.1 MB, free: 34.06 MB / 318.1 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.637e-05/0.2699, allocations: 6.938 kB / 429.1 MB, free: 34.06 MB / 318.1 MB Notification: Performance of sorting global known variables: time 0.0002596/0.2702, allocations: 264.5 kB / 429.3 MB, free: 33.98 MB / 318.1 MB Notification: Performance of sort global known variables: time 5.91e-07/0.2702, allocations: 0 / 429.3 MB, free: 33.98 MB / 318.1 MB Notification: Performance of remove unused functions: time 0.0006156/0.2708, allocations: 121 kB / 429.4 MB, free: 33.98 MB / 318.1 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 4 * Number of states: 2 (waterConservationLaw.state[1],waterConservationLaw1.state[1]) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (8): * Single equations (assignments): 4 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 4 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 2 {(2,100.0%) 3,(2,100.0%) 3} * Non-linear torn systems: 2 {2 3,2 3} Notification: Performance of Backend phase and start with SimCode phase: time 0.0001018/0.2709, allocations: 103.5 kB / 429.5 MB, free: 33.89 MB / 318.1 MB Notification: Performance of simCode: created initialization part: time 0.001093/0.272, allocations: 0.7983 MB / 430.3 MB, free: 33.44 MB / 318.1 MB Notification: Performance of simCode: created event and clocks part: time 2.415e-06/0.272, allocations: 1.438 kB / 430.3 MB, free: 33.44 MB / 318.1 MB Notification: Performance of simCode: created simulation system equations: time 0.0007599/0.2728, allocations: 0.6662 MB / 431 MB, free: 32.98 MB / 318.1 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0005433/0.2734, allocations: 104.9 kB / 431.1 MB, free: 32.98 MB / 318.1 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0009725/0.2743, allocations: 0.8366 MB / 431.9 MB, free: 32.55 MB / 318.1 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002838/0.2746, allocations: 0.8384 MB / 432.8 MB, free: 31.86 MB / 318.1 MB Notification: Performance of simCode: alias equations: time 0.000151/0.2748, allocations: 47.7 kB / 432.8 MB, free: 31.85 MB / 318.1 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 4.26e-05/0.2749, allocations: 26.5 kB / 432.9 MB, free: 31.84 MB / 318.1 MB Notification: Performance of SimCode: time 2.31e-07/0.2749, allocations: 1.5 kB / 432.9 MB, free: 31.84 MB / 318.1 MB Notification: Performance of Templates: time 0.01252/0.2874, allocations: 6.85 MB / 439.7 MB, free: 30.73 MB / 318.1 MB make -j1 -f Physiolibrary_Physiolibrary.SteadyStates.Examples.Cells_SteadyState.makefile Environment - environmentSimulation: (rm -f Physiolibrary_Physiolibrary.SteadyStates.Examples.Cells_SteadyState.pipe ; mkfifo Physiolibrary_Physiolibrary.SteadyStates.Examples.Cells_SteadyState.pipe ; head -c 1048576 < Physiolibrary_Physiolibrary.SteadyStates.Examples.Cells_SteadyState.pipe >> ../files/Physiolibrary_Physiolibrary.SteadyStates.Examples.Cells_SteadyState.sim & ./Physiolibrary_Physiolibrary.SteadyStates.Examples.Cells_SteadyState -abortSlowSimulation -alarm=480 -lv LOG_STATS > Physiolibrary_Physiolibrary.SteadyStates.Examples.Cells_SteadyState.pipe 2>&1) Environment - environmentSimulation: