[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "
Before silumation in "Dymola 2014 FD01" please set e...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.07701/0.07701, allocations: 15.4 MB / 285.8 MB, free: 5.762 MB / 238.1 MB Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.000498/0.0004981, allocations: 15.98 kB / 347.7 MB, free: 18.18 MB / 254.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.0772/0.07771, allocations: 51.41 MB / 399.1 MB, free: 14.66 MB / 302.1 MB Notification: Performance of NFInst.instantiate(Physiolibrary.Osmotic.Examples.Cell): time 0.002555/0.0803, allocations: 2.473 MB / 401.5 MB, free: 12.17 MB / 302.1 MB Notification: Performance of NFInst.instExpressions: time 0.005484/0.08582, allocations: 4.219 MB / 405.8 MB, free: 7.938 MB / 302.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002802/0.08613, allocations: 11.88 kB / 405.8 MB, free: 7.926 MB / 302.1 MB Notification: Performance of NFTyping.typeComponents: time 0.0001786/0.08632, allocations: 47.66 kB / 405.8 MB, free: 7.879 MB / 302.1 MB Notification: Performance of NFTyping.typeBindings: time 0.001414/0.08774, allocations: 0.5138 MB / 406.3 MB, free: 7.363 MB / 302.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.00142/0.08918, allocations: 0.5651 MB / 406.9 MB, free: 6.797 MB / 302.1 MB Notification: Performance of NFFlatten.flatten: time 0.0004666/0.08965, allocations: 311.2 kB / 407.2 MB, free: 6.492 MB / 302.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0001392/0.0898, allocations: 52.72 kB / 407.2 MB, free: 6.445 MB / 302.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0001433/0.08995, allocations: 115.5 kB / 407.4 MB, free: 6.332 MB / 302.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.000199/0.09016, allocations: 135.4 kB / 407.5 MB, free: 6.199 MB / 302.1 MB Notification: Performance of NFPackage.collectConstants: time 2.98e-05/0.0902, allocations: 12 kB / 407.5 MB, free: 6.188 MB / 302.1 MB Notification: Performance of NFFlatten.collectFunctions: time 4.362e-05/0.09025, allocations: 12 kB / 407.5 MB, free: 6.176 MB / 302.1 MB Notification: Performance of NFScalarize.scalarize: time 8.828e-05/0.09034, allocations: 63.75 kB / 407.6 MB, free: 6.113 MB / 302.1 MB Notification: Performance of NFVerifyModel.verify: time 7.99e-05/0.09043, allocations: 85.52 kB / 407.7 MB, free: 6.023 MB / 302.1 MB Notification: Performance of NFConvertDAE.convert: time 0.0001886/0.09062, allocations: 211.7 kB / 407.9 MB, free: 5.816 MB / 302.1 MB Notification: Performance of FrontEnd - DAE generated: time 2.104e-06/0.09063, allocations: 0 / 407.9 MB, free: 5.816 MB / 302.1 MB Notification: Performance of FrontEnd: time 1.152e-06/0.09064, allocations: 0 / 407.9 MB, free: 5.816 MB / 302.1 MB Notification: Performance of Transformations before backend: time 6.272e-06/0.09065, allocations: 0 / 407.9 MB, free: 5.816 MB / 302.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 46 * Number of variables: 46 Notification: Performance of Generate backend data structure: time 0.0007116/0.09137, allocations: 0.5724 MB / 408.4 MB, free: 5.191 MB / 302.1 MB Notification: Performance of prepare preOptimizeDAE: time 3.276e-05/0.09141, allocations: 8.031 kB / 408.4 MB, free: 5.184 MB / 302.1 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 7.117e-05/0.09148, allocations: 39.48 kB / 408.5 MB, free: 5.145 MB / 302.1 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004206/0.09191, allocations: 318.9 kB / 408.8 MB, free: 4.793 MB / 302.1 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.639e-05/0.09193, allocations: 20.38 kB / 408.8 MB, free: 4.773 MB / 302.1 MB Notification: Performance of preOpt expandDerOperator (simulation): time 4.533e-05/0.09199, allocations: 24 kB / 408.8 MB, free: 4.75 MB / 302.1 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003058/0.0923, allocations: 209.9 kB / 409 MB, free: 4.535 MB / 302.1 MB Notification: Performance of preOpt findStateOrder (simulation): time 1.297e-05/0.09232, allocations: 0 / 409 MB, free: 4.535 MB / 302.1 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.37e-05/0.09235, allocations: 8 kB / 409 MB, free: 4.527 MB / 302.1 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.935e-06/0.09236, allocations: 11.94 kB / 409.1 MB, free: 4.516 MB / 302.1 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002362/0.0926, allocations: 155.7 kB / 409.2 MB, free: 4.363 MB / 302.1 MB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001136/0.09375, allocations: 0.7807 MB / 410 MB, free: 3.527 MB / 302.1 MB Notification: Performance of preOpt comSubExp (simulation): time 0.0002421/0.094, allocations: 185.1 kB / 410.2 MB, free: 3.328 MB / 302.1 MB Notification: Performance of preOpt evalFunc (simulation): time 1.545e-05/0.09403, allocations: 7.922 kB / 410.2 MB, free: 3.32 MB / 302.1 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.063e-05/0.09406, allocations: 38.5 kB / 410.2 MB, free: 3.273 MB / 302.1 MB Notification: Performance of pre-optimization done (n=14): time 1.352e-06/0.09406, allocations: 0 / 410.2 MB, free: 3.273 MB / 302.1 MB Notification: Performance of matching and sorting (n=14): time 0.0003784/0.09445, allocations: 213.5 kB / 410.4 MB, free: 3.055 MB / 302.1 MB Notification: Performance of inlineWhenForInitialization (initialization): time 4.134e-05/0.0945, allocations: 81.11 kB / 410.5 MB, free: 2.957 MB / 302.1 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002965/0.0948, allocations: 325.7 kB / 410.8 MB, free: 2.633 MB / 302.1 MB Notification: Performance of collectPreVariables (initialization): time 1.927e-05/0.09483, allocations: 29.7 kB / 410.9 MB, free: 2.598 MB / 302.1 MB Notification: Performance of collectInitialEqns (initialization): time 9.906e-05/0.09493, allocations: 176.3 kB / 411 MB, free: 2.422 MB / 302.1 MB Notification: Performance of collectInitialBindings (initialization): time 4.259e-05/0.09498, allocations: 55.2 kB / 411.1 MB, free: 2.367 MB / 302.1 MB Notification: Performance of simplifyInitialFunctions (initialization): time 8.165e-06/0.095, allocations: 4 kB / 411.1 MB, free: 2.363 MB / 302.1 MB Notification: Performance of setup shared object (initialization): time 0.0001011/0.0951, allocations: 342.8 kB / 411.4 MB, free: 2.02 MB / 302.1 MB Notification: Performance of preBalanceInitialSystem (initialization): time 8.793e-05/0.0952, allocations: 59.91 kB / 411.5 MB, free: 1.961 MB / 302.1 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001051/0.09531, allocations: 101.8 kB / 411.6 MB, free: 1.844 MB / 302.1 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.0001079/0.09542, allocations: 71.86 kB / 411.6 MB, free: 1.773 MB / 302.1 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.774e-06/0.09543, allocations: 0 / 411.6 MB, free: 1.773 MB / 302.1 MB Notification: Performance of matching and sorting (n=26) (initialization): time 0.0002896/0.09573, allocations: 233 kB / 411.9 MB, free: 1.539 MB / 302.1 MB Notification: Performance of prepare postOptimizeDAE: time 1.513e-05/0.09575, allocations: 4 kB / 411.9 MB, free: 1.535 MB / 302.1 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.061e-06/0.09576, allocations: 4 kB / 411.9 MB, free: 1.531 MB / 302.1 MB Notification: Performance of postOpt tearingSystem (initialization): time 1.188e-05/0.09578, allocations: 0 / 411.9 MB, free: 1.531 MB / 302.1 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001764/0.09596, allocations: 43.98 kB / 411.9 MB, free: 1.488 MB / 302.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 8.767e-06/0.09598, allocations: 7.938 kB / 411.9 MB, free: 1.48 MB / 302.1 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001148/0.0961, allocations: 23.69 kB / 412 MB, free: 1.457 MB / 302.1 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.214e-05/0.09612, allocations: 8 kB / 412 MB, free: 1.449 MB / 302.1 MB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 6 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (26): * Single equations (assignments): 26 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0001117/0.09623, allocations: 145.9 kB / 412.1 MB, free: 1.297 MB / 302.1 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 6.452e-05/0.0963, allocations: 35.58 kB / 412.1 MB, free: 1.262 MB / 302.1 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 6.372e-05/0.09637, allocations: 34.86 kB / 412.2 MB, free: 1.219 MB / 302.1 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.791e-06/0.09639, allocations: 4 kB / 412.2 MB, free: 1.215 MB / 302.1 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 4.719e-06/0.09639, allocations: 3.938 kB / 412.2 MB, free: 1.211 MB / 302.1 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.477e-06/0.0964, allocations: 0 / 412.2 MB, free: 1.211 MB / 302.1 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0003365/0.09674, allocations: 305.5 kB / 412.5 MB, free: 0.8633 MB / 302.1 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.744e-06/0.09676, allocations: 0 / 412.5 MB, free: 0.8633 MB / 302.1 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001434/0.0969, allocations: 27.98 kB / 412.5 MB, free: 0.8359 MB / 302.1 MB Notification: Performance of postOpt tearingSystem (simulation): time 4.459e-06/0.09692, allocations: 7.953 kB / 412.5 MB, free: 0.8281 MB / 302.1 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.587e-05/0.09694, allocations: 4 kB / 412.5 MB, free: 0.8242 MB / 302.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.226e-06/0.09695, allocations: 0 / 412.5 MB, free: 0.8242 MB / 302.1 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.152e-06/0.09695, allocations: 3.938 kB / 412.5 MB, free: 0.8203 MB / 302.1 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0003816/0.09734, allocations: 431.9 kB / 412.9 MB, free: 384 kB / 302.1 MB Notification: Performance of postOpt removeConstants (simulation): time 0.0001054/0.09745, allocations: 124.7 kB / 413.1 MB, free: 240 kB / 302.1 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.554e-05/0.0975, allocations: 4 kB / 413.1 MB, free: 236 kB / 302.1 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001399/0.09764, allocations: 8 kB / 413.1 MB, free: 228 kB / 302.1 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 2.587e-05/0.09768, allocations: 11.98 kB / 413.1 MB, free: 216 kB / 302.1 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.865e-06/0.09769, allocations: 4 kB / 413.1 MB, free: 212 kB / 302.1 MB Notification: Performance of sorting global known variables: time 0.0002017/0.0979, allocations: 231.2 kB / 413.3 MB, free: 15.98 MB / 318.1 MB Notification: Performance of sort global known variables: time 2.01e-07/0.09791, allocations: 0 / 413.3 MB, free: 15.98 MB / 318.1 MB Notification: Performance of remove unused functions: time 0.000322/0.09823, allocations: 59.84 kB / 413.4 MB, free: 15.92 MB / 318.1 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 4 (cells.state,interstitium.state,cells1.state,interstitium1.state) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (14): * Single equations (assignments): 14 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 9.037e-05/0.09833, allocations: 91.25 kB / 413.5 MB, free: 15.82 MB / 318.1 MB Notification: Performance of simCode: created initialization part: time 0.0002278/0.09857, allocations: 151.7 kB / 413.6 MB, free: 15.68 MB / 318.1 MB Notification: Performance of simCode: created event and clocks part: time 1.943e-06/0.09858, allocations: 0 / 413.6 MB, free: 15.68 MB / 318.1 MB Notification: Performance of simCode: created simulation system equations: time 8.067e-05/0.09866, allocations: 64.53 kB / 413.7 MB, free: 15.61 MB / 318.1 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004644/0.09914, allocations: 81.42 kB / 413.8 MB, free: 15.54 MB / 318.1 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0007835/0.09993, allocations: 0.6489 MB / 414.4 MB, free: 14.86 MB / 318.1 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003116/0.1003, allocations: 0.7991 MB / 415.2 MB, free: 14.04 MB / 318.1 MB Notification: Performance of simCode: alias equations: time 0.000139/0.1004, allocations: 51.03 kB / 415.3 MB, free: 13.98 MB / 318.1 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 5.432e-05/0.1005, allocations: 27.42 kB / 415.3 MB, free: 13.96 MB / 318.1 MB Notification: Performance of SimCode: time 5.91e-07/0.1005, allocations: 7.938 kB / 415.3 MB, free: 13.95 MB / 318.1 MB Notification: Performance of Templates: time 0.005986/0.1065, allocations: 3.117 MB / 418.4 MB, free: 10.83 MB / 318.1 MB make -j1 -f Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.makefile Environment - environmentSimulation: (rm -f Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.pipe ; mkfifo Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.pipe ; head -c 1048576 < Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.pipe >> ../files/Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.sim & ./Physiolibrary_Physiolibrary.Osmotic.Examples.Cell -abortSlowSimulation -alarm=480 -lv LOG_STATS > Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.pipe 2>&1) Environment - environmentSimulation: