[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "
Before silumation in "Dymola 2014 FD01" please set e...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.07269/0.07269, allocations: 15.4 MB / 285.8 MB, free: 5.902 MB / 238.1 MB Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.0005169/0.0005169, allocations: 20 kB / 347.7 MB, free: 18.22 MB / 254.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.08288/0.0834, allocations: 51.4 MB / 399.1 MB, free: 14.7 MB / 302.1 MB Notification: Performance of NFInst.instantiate(Physiolibrary.Chemical.Examples.MichaelisMenten): time 0.002705/0.08614, allocations: 2.693 MB / 401.7 MB, free: 11.99 MB / 302.1 MB Notification: Performance of NFInst.instExpressions: time 0.003979/0.09014, allocations: 2.839 MB / 404.6 MB, free: 9.141 MB / 302.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.000314/0.09049, allocations: 11.94 kB / 404.6 MB, free: 9.129 MB / 302.1 MB Notification: Performance of NFTyping.typeComponents: time 0.0001612/0.09066, allocations: 39.67 kB / 404.6 MB, free: 9.09 MB / 302.1 MB Notification: Performance of NFTyping.typeBindings: time 0.001176/0.09184, allocations: 398.7 kB / 405 MB, free: 8.699 MB / 302.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.0009335/0.09279, allocations: 379 kB / 405.4 MB, free: 8.328 MB / 302.1 MB Notification: Performance of NFFlatten.flatten: time 0.000445/0.09325, allocations: 363.1 kB / 405.8 MB, free: 7.973 MB / 302.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0001559/0.09341, allocations: 65.39 kB / 405.8 MB, free: 7.898 MB / 302.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0001343/0.09355, allocations: 131.5 kB / 405.9 MB, free: 7.77 MB / 302.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.0002294/0.09379, allocations: 187.2 kB / 406.1 MB, free: 7.586 MB / 302.1 MB Notification: Performance of NFPackage.collectConstants: time 3.125e-05/0.09383, allocations: 16 kB / 406.1 MB, free: 7.57 MB / 302.1 MB Notification: Performance of NFFlatten.collectFunctions: time 4.328e-05/0.09388, allocations: 12 kB / 406.2 MB, free: 7.559 MB / 302.1 MB Notification: Performance of NFScalarize.scalarize: time 8.861e-05/0.09397, allocations: 79.7 kB / 406.2 MB, free: 7.48 MB / 302.1 MB Notification: Performance of NFVerifyModel.verify: time 7.464e-05/0.09406, allocations: 85.52 kB / 406.3 MB, free: 7.391 MB / 302.1 MB Notification: Performance of NFConvertDAE.convert: time 0.0002302/0.09429, allocations: 251.6 kB / 406.6 MB, free: 7.145 MB / 302.1 MB Notification: Performance of FrontEnd - DAE generated: time 2.264e-06/0.0943, allocations: 0 / 406.6 MB, free: 7.145 MB / 302.1 MB Notification: Performance of FrontEnd: time 1.383e-06/0.09431, allocations: 0 / 406.6 MB, free: 7.145 MB / 302.1 MB Notification: Performance of Transformations before backend: time 6.272e-06/0.09432, allocations: 0 / 406.6 MB, free: 7.145 MB / 302.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 48 * Number of variables: 48 Notification: Performance of Generate backend data structure: time 0.001132/0.09546, allocations: 0.6501 MB / 407.2 MB, free: 6.445 MB / 302.1 MB Notification: Performance of prepare preOptimizeDAE: time 3.318e-05/0.0955, allocations: 8.031 kB / 407.2 MB, free: 6.438 MB / 302.1 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 7.346e-05/0.09558, allocations: 43.48 kB / 407.3 MB, free: 6.395 MB / 302.1 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.000495/0.09608, allocations: 357.2 kB / 407.6 MB, free: 6.004 MB / 302.1 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.949e-05/0.09611, allocations: 12.44 kB / 407.6 MB, free: 5.992 MB / 302.1 MB Notification: Performance of preOpt expandDerOperator (simulation): time 4.132e-05/0.09615, allocations: 24 kB / 407.6 MB, free: 5.969 MB / 302.1 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003465/0.09651, allocations: 245.8 kB / 407.9 MB, free: 5.719 MB / 302.1 MB Notification: Performance of preOpt findStateOrder (simulation): time 9.748e-06/0.09653, allocations: 4 kB / 407.9 MB, free: 5.715 MB / 302.1 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.158e-05/0.09655, allocations: 11.98 kB / 407.9 MB, free: 5.703 MB / 302.1 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.154e-06/0.09656, allocations: 7.953 kB / 407.9 MB, free: 5.695 MB / 302.1 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002583/0.09683, allocations: 157.6 kB / 408.1 MB, free: 5.543 MB / 302.1 MB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00148/0.09831, allocations: 0.8347 MB / 408.9 MB, free: 4.648 MB / 302.1 MB Notification: Performance of preOpt comSubExp (simulation): time 0.000435/0.09876, allocations: 241.1 kB / 409.1 MB, free: 4.395 MB / 302.1 MB Notification: Performance of preOpt evalFunc (simulation): time 1.513e-05/0.09879, allocations: 0 / 409.1 MB, free: 4.395 MB / 302.1 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.931e-05/0.09882, allocations: 34.62 kB / 409.2 MB, free: 4.352 MB / 302.1 MB Notification: Performance of pre-optimization done (n=17): time 1.373e-06/0.09884, allocations: 0 / 409.2 MB, free: 4.352 MB / 302.1 MB Notification: Performance of matching and sorting (n=24): time 0.005149/0.104, allocations: 1.357 MB / 410.5 MB, free: 2.961 MB / 302.1 MB Notification: Performance of inlineWhenForInitialization (initialization): time 4.402e-05/0.1041, allocations: 81.11 kB / 410.6 MB, free: 2.863 MB / 302.1 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004397/0.1045, allocations: 405.9 kB / 411 MB, free: 2.461 MB / 302.1 MB Notification: Performance of collectPreVariables (initialization): time 2.752e-05/0.1045, allocations: 29.7 kB / 411 MB, free: 2.426 MB / 302.1 MB Notification: Performance of collectInitialEqns (initialization): time 0.0001383/0.1047, allocations: 208.1 kB / 411.2 MB, free: 2.219 MB / 302.1 MB Notification: Performance of collectInitialBindings (initialization): time 7.211e-05/0.1048, allocations: 86.8 kB / 411.3 MB, free: 2.133 MB / 302.1 MB Notification: Performance of simplifyInitialFunctions (initialization): time 1.632e-05/0.1048, allocations: 4 kB / 411.3 MB, free: 2.129 MB / 302.1 MB Notification: Performance of setup shared object (initialization): time 0.0001237/0.1049, allocations: 354.8 kB / 411.7 MB, free: 1.773 MB / 302.1 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001971/0.1051, allocations: 131.9 kB / 411.8 MB, free: 1.645 MB / 302.1 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002356/0.1054, allocations: 213 kB / 412 MB, free: 1.402 MB / 302.1 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.0002342/0.1056, allocations: 169 kB / 412.2 MB, free: 1.238 MB / 302.1 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.553e-06/0.1056, allocations: 0 / 412.2 MB, free: 1.238 MB / 302.1 MB Notification: Performance of matching and sorting (n=37) (initialization): time 0.002461/0.1081, allocations: 0.7388 MB / 412.9 MB, free: 496 kB / 302.1 MB Notification: Performance of prepare postOptimizeDAE: time 1.768e-05/0.1081, allocations: 4 kB / 412.9 MB, free: 492 kB / 302.1 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 7.895e-06/0.1081, allocations: 4 kB / 412.9 MB, free: 488 kB / 302.1 MB Notification: Performance of postOpt tearingSystem (initialization): time 0.002607/0.1107, allocations: 429.1 kB / 413.3 MB, free: 52 kB / 302.1 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001747/0.1109, allocations: 39.97 kB / 413.4 MB, free: 12 kB / 302.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.005711/0.1166, allocations: 4.662 MB / 418 MB, free: 11.07 MB / 318.1 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003129/0.117, allocations: 19.92 kB / 418.1 MB, free: 11.05 MB / 318.1 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.28e-05/0.117, allocations: 16 kB / 418.1 MB, free: 11.04 MB / 318.1 MB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 11 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (25): * Single equations (assignments): 23 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 2 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 1 {(1,100.0%) 6} * Non-linear torn systems: 1 {1 6} Notification: Performance of prepare postOptimizeDAE: time 0.0001818/0.1172, allocations: 157.8 kB / 418.2 MB, free: 10.87 MB / 318.1 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 6.347e-05/0.1173, allocations: 39.53 kB / 418.3 MB, free: 10.83 MB / 318.1 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001075/0.1174, allocations: 59.73 kB / 418.3 MB, free: 10.77 MB / 318.1 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.917e-06/0.1174, allocations: 3.953 kB / 418.3 MB, free: 10.77 MB / 318.1 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 7.153e-06/0.1174, allocations: 4 kB / 418.3 MB, free: 10.77 MB / 318.1 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.927e-06/0.1174, allocations: 0 / 418.3 MB, free: 10.77 MB / 318.1 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.00306/0.1205, allocations: 1.187 MB / 419.5 MB, free: 9.516 MB / 318.1 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.326e-06/0.1205, allocations: 0 / 419.5 MB, free: 9.516 MB / 318.1 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 9.377e-05/0.1206, allocations: 23.98 kB / 419.5 MB, free: 9.492 MB / 318.1 MB Notification: Performance of postOpt tearingSystem (simulation): time 0.002488/0.1231, allocations: 421.4 kB / 420 MB, free: 9.074 MB / 318.1 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.427e-05/0.1232, allocations: 8 kB / 420 MB, free: 9.066 MB / 318.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.00501/0.1282, allocations: 4.44 MB / 424.4 MB, free: 4.34 MB / 318.1 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 5.711e-06/0.1282, allocations: 11.97 kB / 424.4 MB, free: 4.328 MB / 318.1 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002613/0.1308, allocations: 0.9553 MB / 425.4 MB, free: 3.34 MB / 318.1 MB Notification: Performance of postOpt removeConstants (simulation): time 0.0002019/0.1311, allocations: 144.6 kB / 425.5 MB, free: 3.18 MB / 318.1 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.761e-05/0.1311, allocations: 0.625 kB / 425.5 MB, free: 3.18 MB / 318.1 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002318/0.1313, allocations: 15.98 kB / 425.5 MB, free: 3.164 MB / 318.1 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 6.552e-05/0.1314, allocations: 19.97 kB / 425.5 MB, free: 3.145 MB / 318.1 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.48e-05/0.1314, allocations: 7.938 kB / 425.6 MB, free: 3.137 MB / 318.1 MB Notification: Performance of sorting global known variables: time 0.0002867/0.1317, allocations: 287.1 kB / 425.8 MB, free: 2.855 MB / 318.1 MB Notification: Performance of sort global known variables: time 1.7e-07/0.1317, allocations: 8 kB / 425.8 MB, free: 2.848 MB / 318.1 MB Notification: Performance of remove unused functions: time 0.0006069/0.1324, allocations: 140 kB / 426 MB, free: 2.711 MB / 318.1 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 1 (state[1]) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (13): * Single equations (assignments): 11 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 2 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 1 {(1,100.0%) 5} * Non-linear torn systems: 1 {1 6} Notification: Performance of Backend phase and start with SimCode phase: time 0.000105/0.1325, allocations: 103.2 kB / 426.1 MB, free: 2.602 MB / 318.1 MB Notification: Performance of simCode: created initialization part: time 0.0009752/0.1334, allocations: 0.5984 MB / 426.7 MB, free: 1.977 MB / 318.1 MB Notification: Performance of simCode: created event and clocks part: time 2.504e-06/0.1335, allocations: 0 / 426.7 MB, free: 1.977 MB / 318.1 MB Notification: Performance of simCode: created simulation system equations: time 0.0005939/0.1341, allocations: 437.5 kB / 427.1 MB, free: 1.523 MB / 318.1 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004434/0.1345, allocations: 105.1 kB / 427.2 MB, free: 1.426 MB / 318.1 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001051/0.1356, allocations: 0.8094 MB / 428 MB, free: 0.5859 MB / 318.1 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.1406/0.2762, allocations: 0.8168 MB / 428.8 MB, free: 34.46 MB / 318.1 MB Notification: Performance of simCode: alias equations: time 0.000306/0.2766, allocations: 57.52 kB / 428.9 MB, free: 34.46 MB / 318.1 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 7.195e-05/0.2766, allocations: 28.55 kB / 428.9 MB, free: 34.45 MB / 318.1 MB Notification: Performance of SimCode: time 8.92e-07/0.2767, allocations: 0 / 428.9 MB, free: 34.45 MB / 318.1 MB Notification: Performance of Templates: time 0.01543/0.2921, allocations: 9.092 MB / 438 MB, free: 32.6 MB / 318.1 MB make -j1 -f Physiolibrary_Physiolibrary.Chemical.Examples.MichaelisMenten.makefile Environment - environmentSimulation: (rm -f Physiolibrary_Physiolibrary.Chemical.Examples.MichaelisMenten.pipe ; mkfifo Physiolibrary_Physiolibrary.Chemical.Examples.MichaelisMenten.pipe ; head -c 1048576 < Physiolibrary_Physiolibrary.Chemical.Examples.MichaelisMenten.pipe >> ../files/Physiolibrary_Physiolibrary.Chemical.Examples.MichaelisMenten.sim & ./Physiolibrary_Physiolibrary.Chemical.Examples.MichaelisMenten -abortSlowSimulation -alarm=480 -lv LOG_STATS > Physiolibrary_Physiolibrary.Chemical.Examples.MichaelisMenten.pipe 2>&1) Environment - environmentSimulation: