[1] Matej?k M, Kulh?nek T, Matouaek S. Adair-Based Hemoglobin...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/Chemical.mo:1632:61-1632:133:writable] Warning: The file was not encoded in UTF-8: "
Before silumation in "Dymola 2014 FD01" please set e...". Defaulting to 7-bit ASCII with unknown characters replaced by '?'. To change encoding when loading a file: loadFile(encoding="ISO-XXXX-YY"). To change it in a package: add a file package.encoding at the top-level. Note: The Modelica Language Specification only allows files encoded in UTF-8. Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 2.3.1/package.mo): time 0.08389/0.08389, allocations: 15.4 MB / 285.8 MB, free: 5.789 MB / 238.1 MB Notification: Modelica requested package Complex of version 3.2.3. Complex 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Modelica requested package ModelicaServices of version 3.2.3. ModelicaServices 4.0.0 is used instead which states that it is fully compatible without conversion script needed. Notification: Physiolibrary requested package Modelica of version 3.2.1. Modelica 3.2.3 is used instead which states that it is fully compatible without conversion script needed. Notification: Performance of FrontEnd - loaded program: time 0.0005279/0.0005279, allocations: 12 kB / 347.8 MB, free: 18.09 MB / 254.1 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.09272/0.09326, allocations: 51.4 MB / 399.2 MB, free: 14.57 MB / 302.1 MB Notification: Performance of NFInst.instantiate(Physiolibrary.Osmotic.Examples.Cell): time 0.00277/0.09608, allocations: 2.469 MB / 401.6 MB, free: 12.09 MB / 302.1 MB Notification: Performance of NFInst.instExpressions: time 0.005958/0.1021, allocations: 4.215 MB / 405.8 MB, free: 7.863 MB / 302.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002938/0.1024, allocations: 11.88 kB / 405.9 MB, free: 7.852 MB / 302.1 MB Notification: Performance of NFTyping.typeComponents: time 0.000183/0.1026, allocations: 47.67 kB / 405.9 MB, free: 7.805 MB / 302.1 MB Notification: Performance of NFTyping.typeBindings: time 0.001561/0.1042, allocations: 0.5099 MB / 406.4 MB, free: 7.293 MB / 302.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.001478/0.1057, allocations: 0.5768 MB / 407 MB, free: 6.715 MB / 302.1 MB Notification: Performance of NFFlatten.flatten: time 0.0003929/0.1061, allocations: 311.2 kB / 407.3 MB, free: 6.41 MB / 302.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.000154/0.1062, allocations: 52.7 kB / 407.3 MB, free: 6.363 MB / 302.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0001234/0.1064, allocations: 115.5 kB / 407.5 MB, free: 6.25 MB / 302.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.0001837/0.1066, allocations: 135.4 kB / 407.6 MB, free: 6.117 MB / 302.1 MB Notification: Performance of NFPackage.collectConstants: time 2.785e-05/0.1066, allocations: 12 kB / 407.6 MB, free: 6.105 MB / 302.1 MB Notification: Performance of NFFlatten.collectFunctions: time 3.734e-05/0.1066, allocations: 12 kB / 407.6 MB, free: 6.094 MB / 302.1 MB Notification: Performance of NFScalarize.scalarize: time 8.891e-05/0.1067, allocations: 67.73 kB / 407.7 MB, free: 6.027 MB / 302.1 MB Notification: Performance of NFVerifyModel.verify: time 8.139e-05/0.1068, allocations: 85.52 kB / 407.8 MB, free: 5.938 MB / 302.1 MB Notification: Performance of NFConvertDAE.convert: time 0.0002011/0.107, allocations: 211.7 kB / 408 MB, free: 5.73 MB / 302.1 MB Notification: Performance of FrontEnd - DAE generated: time 2.295e-06/0.107, allocations: 0 / 408 MB, free: 5.73 MB / 302.1 MB Notification: Performance of FrontEnd: time 1.403e-06/0.107, allocations: 0 / 408 MB, free: 5.73 MB / 302.1 MB Notification: Performance of Transformations before backend: time 5.481e-06/0.1071, allocations: 0 / 408 MB, free: 5.73 MB / 302.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 46 * Number of variables: 46 Notification: Performance of Generate backend data structure: time 0.0007293/0.1078, allocations: 0.5647 MB / 408.5 MB, free: 5.113 MB / 302.1 MB Notification: Performance of prepare preOptimizeDAE: time 4.192e-05/0.1078, allocations: 8.031 kB / 408.5 MB, free: 5.105 MB / 302.1 MB Notification: Performance of preOpt introduceOutputAliases (simulation): time 4.965e-05/0.1079, allocations: 50.55 kB / 408.6 MB, free: 5.047 MB / 302.1 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 5.322e-05/0.108, allocations: 43.48 kB / 408.6 MB, free: 5.004 MB / 302.1 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0004335/0.1084, allocations: 322.9 kB / 408.9 MB, free: 4.648 MB / 302.1 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.907e-05/0.1084, allocations: 16.38 kB / 409 MB, free: 4.633 MB / 302.1 MB Notification: Performance of preOpt expandDerOperator (simulation): time 4.208e-05/0.1085, allocations: 23.98 kB / 409 MB, free: 4.609 MB / 302.1 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003316/0.1088, allocations: 213.9 kB / 409.2 MB, free: 4.391 MB / 302.1 MB Notification: Performance of preOpt findStateOrder (simulation): time 1.344e-05/0.1088, allocations: 0 / 409.2 MB, free: 4.391 MB / 302.1 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.89e-05/0.1089, allocations: 8 kB / 409.2 MB, free: 4.383 MB / 302.1 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 9.808e-06/0.1089, allocations: 7.953 kB / 409.2 MB, free: 4.375 MB / 302.1 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002674/0.1091, allocations: 159.8 kB / 409.4 MB, free: 4.219 MB / 302.1 MB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0012/0.1104, allocations: 0.7846 MB / 410.2 MB, free: 3.379 MB / 302.1 MB Notification: Performance of preOpt comSubExp (simulation): time 0.0002559/0.1106, allocations: 181 kB / 410.3 MB, free: 3.184 MB / 302.1 MB Notification: Performance of preOpt evalFunc (simulation): time 1.35e-05/0.1106, allocations: 0 / 410.3 MB, free: 3.184 MB / 302.1 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.32e-05/0.1107, allocations: 34.56 kB / 410.4 MB, free: 3.141 MB / 302.1 MB Notification: Performance of pre-optimization done (n=14): time 9.12e-07/0.1107, allocations: 4 kB / 410.4 MB, free: 3.137 MB / 302.1 MB Notification: Performance of matching and sorting (n=14): time 0.0003896/0.1111, allocations: 213.5 kB / 410.6 MB, free: 2.922 MB / 302.1 MB Notification: Performance of inlineWhenForInitialization (initialization): time 4.88e-05/0.1111, allocations: 85.05 kB / 410.7 MB, free: 2.82 MB / 302.1 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002883/0.1114, allocations: 321.7 kB / 411 MB, free: 2.5 MB / 302.1 MB Notification: Performance of collectPreVariables (initialization): time 1.891e-05/0.1115, allocations: 29.7 kB / 411 MB, free: 2.465 MB / 302.1 MB Notification: Performance of collectInitialEqns (initialization): time 0.0001131/0.1116, allocations: 176.3 kB / 411.2 MB, free: 2.289 MB / 302.1 MB Notification: Performance of collectInitialBindings (initialization): time 4.686e-05/0.1116, allocations: 51.2 kB / 411.2 MB, free: 2.238 MB / 302.1 MB Notification: Performance of simplifyInitialFunctions (initialization): time 9.398e-06/0.1116, allocations: 11.94 kB / 411.2 MB, free: 2.227 MB / 302.1 MB Notification: Performance of setup shared object (initialization): time 0.0001312/0.1118, allocations: 342.8 kB / 411.6 MB, free: 1.883 MB / 302.1 MB Notification: Performance of preBalanceInitialSystem (initialization): time 8.66e-05/0.1119, allocations: 59.97 kB / 411.6 MB, free: 1.824 MB / 302.1 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.000108/0.112, allocations: 98.58 kB / 411.7 MB, free: 1.711 MB / 302.1 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.0001126/0.1121, allocations: 71.92 kB / 411.8 MB, free: 1.641 MB / 302.1 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.386e-06/0.1121, allocations: 8 kB / 411.8 MB, free: 1.633 MB / 302.1 MB Notification: Performance of matching and sorting (n=26) (initialization): time 0.0002936/0.1124, allocations: 229 kB / 412 MB, free: 1.402 MB / 302.1 MB Notification: Performance of prepare postOptimizeDAE: time 1.567e-05/0.1124, allocations: 4 kB / 412 MB, free: 1.398 MB / 302.1 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.66e-06/0.1125, allocations: 0 / 412 MB, free: 1.398 MB / 302.1 MB Notification: Performance of postOpt tearingSystem (initialization): time 1.482e-05/0.1125, allocations: 8 kB / 412 MB, free: 1.391 MB / 302.1 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001885/0.1127, allocations: 43.92 kB / 412.1 MB, free: 1.348 MB / 302.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 6.312e-06/0.1127, allocations: 0.625 kB / 412.1 MB, free: 1.348 MB / 302.1 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001095/0.1128, allocations: 27.81 kB / 412.1 MB, free: 1.32 MB / 302.1 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.208e-05/0.1128, allocations: 8 kB / 412.1 MB, free: 1.312 MB / 302.1 MB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 6 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (26): * Single equations (assignments): 26 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0001278/0.113, allocations: 149.8 kB / 412.3 MB, free: 1.156 MB / 302.1 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 6.271e-05/0.113, allocations: 35.58 kB / 412.3 MB, free: 1.121 MB / 302.1 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 6.922e-05/0.1131, allocations: 34.86 kB / 412.3 MB, free: 1.078 MB / 302.1 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.625e-06/0.1131, allocations: 0 / 412.3 MB, free: 1.078 MB / 302.1 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.951e-06/0.1131, allocations: 3.984 kB / 412.3 MB, free: 1.074 MB / 302.1 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.352e-06/0.1131, allocations: 4 kB / 412.3 MB, free: 1.07 MB / 302.1 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0003629/0.1135, allocations: 305.5 kB / 412.6 MB, free: 0.7227 MB / 302.1 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.263e-06/0.1135, allocations: 0 / 412.6 MB, free: 0.7227 MB / 302.1 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001436/0.1137, allocations: 27.98 kB / 412.7 MB, free: 0.6953 MB / 302.1 MB Notification: Performance of postOpt tearingSystem (simulation): time 4.899e-06/0.1137, allocations: 3.953 kB / 412.7 MB, free: 0.6914 MB / 302.1 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.523e-05/0.1137, allocations: 11.92 kB / 412.7 MB, free: 0.6797 MB / 302.1 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 2.695e-06/0.1137, allocations: 4 kB / 412.7 MB, free: 0.6758 MB / 302.1 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.316e-06/0.1137, allocations: 0 / 412.7 MB, free: 0.6758 MB / 302.1 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0003895/0.1141, allocations: 427.9 kB / 413.1 MB, free: 240 kB / 302.1 MB Notification: Performance of postOpt removeConstants (simulation): time 0.0001096/0.1142, allocations: 128.7 kB / 413.2 MB, free: 92 kB / 302.1 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.634e-05/0.1143, allocations: 3.984 kB / 413.2 MB, free: 88 kB / 302.1 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001386/0.1144, allocations: 4 kB / 413.2 MB, free: 84 kB / 302.1 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 2.096e-05/0.1144, allocations: 8 kB / 413.2 MB, free: 76 kB / 302.1 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.754e-06/0.1144, allocations: 3.984 kB / 413.2 MB, free: 72 kB / 302.1 MB Notification: Performance of sorting global known variables: time 0.0002103/0.1147, allocations: 227.2 kB / 413.5 MB, free: 15.85 MB / 318.1 MB Notification: Performance of sort global known variables: time 1.8e-07/0.1147, allocations: 0 / 413.5 MB, free: 15.85 MB / 318.1 MB Notification: Performance of remove unused functions: time 0.0003308/0.115, allocations: 59.84 kB / 413.5 MB, free: 15.79 MB / 318.1 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 2 * Number of states: 4 (cells.state,interstitium.state,cells1.state,interstitium1.state) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (14): * Single equations (assignments): 14 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0006336/0.1156, allocations: 1.039 MB / 414.6 MB, free: 14.72 MB / 318.1 MB Notification: Performance of simCode: created initialization part: time 0.0002331/0.1159, allocations: 135.8 kB / 414.7 MB, free: 14.59 MB / 318.1 MB Notification: Performance of simCode: created event and clocks part: time 2.214e-06/0.1159, allocations: 256 / 414.7 MB, free: 14.59 MB / 318.1 MB Notification: Performance of simCode: created simulation system equations: time 8.006e-05/0.116, allocations: 67.89 kB / 414.8 MB, free: 14.52 MB / 318.1 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0004857/0.1165, allocations: 77.38 kB / 414.8 MB, free: 14.45 MB / 318.1 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001438/0.1179, allocations: 1.721 MB / 416.6 MB, free: 12.64 MB / 318.1 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0003444/0.1183, allocations: 0.7953 MB / 417.4 MB, free: 11.82 MB / 318.1 MB Notification: Performance of simCode: alias equations: time 0.0001525/0.1184, allocations: 54.94 kB / 417.4 MB, free: 11.77 MB / 318.1 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001283/0.1186, allocations: 95.41 kB / 417.5 MB, free: 11.67 MB / 318.1 MB Notification: Performance of SimCode: time 2.21e-07/0.1186, allocations: 0 / 417.5 MB, free: 11.67 MB / 318.1 MB Notification: Performance of buildModelFMU: Generate the FMI files: time 0.01665/0.1352, allocations: 5.928 MB / 423.4 MB, free: 5.734 MB / 318.1 MB Notification: Performance of buildModelFMU: configured platform static using cached values: time 0.0001573/0.1354, allocations: 163.9 kB / 423.6 MB, free: 5.492 MB / 318.1 MB Notification: Performance of buildModelFMU: Generate platform static: time 1.7/1.835, allocations: 3.938 kB / 423.6 MB, free: 5.488 MB / 318.1 MB (rm -f Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.pipe ; mkfifo Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.pipe ; head -c 1048576 < Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.pipe >> ../files/Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.sim & /home/hudson/saved_omc/OMSimulator/install/linux/bin/OMSimulator --tempDir=temp_Physiolibrary_Physiolibrary_Osmotic_Examples_Cell_fmu --startTime=0 --stopTime=60 --timeout=50 --tolerance=1e-06 Physiolibrary_Physiolibrary_Osmotic_Examples_Cell.fmu > Physiolibrary_Physiolibrary.Osmotic.Examples.Cell.pipe 2>&1) Environment - environmentSimulation: