Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries/ --ompython_omhome=/usr Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package Chemical with version 1.4.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo)
Running command: translateModel(Chemical.Examples.AcidBase.Dev.RedCellMembrane,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane")
translateModel(Chemical.Examples.AcidBase.Dev.RedCellMembrane,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane")
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo): time 0.09724/0.09724, allocations: 15.27 MB / 30.21 MB, free: 3.297 MB / 24.77 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001018/0.001018, allocations: 185.1 kB / 35.29 MB, free: 2.375 MB / 24.77 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.307/1.307, allocations: 223.2 MB / 263.4 MB, free: 6.527 MB / 202.7 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.0009121/0.0009121, allocations: 96.36 kB / 318.8 MB, free: 3.438 MB / 250.7 MB
Notification: Performance of FrontEnd - loaded program: time 0.0003539/0.0003539, allocations: 9.375 kB / 383.9 MB, free: 50.71 MB / 298.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.09912/0.09949, allocations: 54.65 MB / 438.6 MB, free: 388 kB / 298.7 MB
Notification: Performance of FrontEnd - scodeFlatten: time 0.3545/0.454, allocations: 103.6 MB / 0.5294 GB, free: 15.52 MB / 378.7 MB
Notification: Performance of FrontEnd - mkProgramGraph: time 0.0002289/0.4543, allocations: 71.5 kB / 0.5295 GB, free: 15.52 MB / 378.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:4721:7-4721:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System blood_erythrocytes.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Solution$blood_erythrocytes.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:4721:7-4721:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System blood_plasma.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Solution.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System HCO3.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$HCO3.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H2O.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H2O.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System HCO3_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$HCO3_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H2O_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H2O_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Cl_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Cl_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Cl.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Cl.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System albumin.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$albumin.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System permeableUncharged.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$permeableUncharged.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System permeableUncharged_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$permeableUncharged_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System chargedImpermeable_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$chargedImpermeable_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Lac_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Lac_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Lac.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Lac.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System CO2.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$CO2.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System CO2_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$CO2_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System O2.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$O2.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System O2_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$O2_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System K.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$K.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Na.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Na.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Na_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Na_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System K_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$K_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H2PO4_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H2PO4_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System ADP_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$ADP_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System ATP_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$ATP_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System HPO4_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$HPO4_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System globulins.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$globulins.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Ca.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Ca.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Mg.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Mg.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DPG.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DPG.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System GSH.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$GSH.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Hemoglobin.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Sources.Buffer$Hemoglobin.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
Notification: Performance of FrontEnd - DAE generated: time 1.471/1.925, allocations: 342.6 MB / 0.8641 GB, free: 27.94 MB / 0.4948 GB
Notification: Performance of FrontEnd: time 2.515e-06/1.925, allocations: 0 / 0.8641 GB, free: 27.94 MB / 0.4948 GB
Notification: Performance of Transformations before backend: time 0.0006803/1.926, allocations: 156.4 kB / 0.8643 GB, free: 27.94 MB / 0.4948 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1818
 * Number of variables: 1818
Notification: Performance of Generate backend data structure: time 0.03772/1.963, allocations: 9.737 MB / 0.8738 GB, free: 24.62 MB / 0.4948 GB
Notification: Performance of prepare preOptimizeDAE: time 5.399e-05/1.963, allocations: 11.44 kB / 0.8738 GB, free: 24.62 MB / 0.4948 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.01409/1.977, allocations: 2.365 MB / 0.8761 GB, free: 24.1 MB / 0.4948 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.01846/1.996, allocations: 5.328 MB / 0.8813 GB, free: 23.14 MB / 0.4948 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.001116/1.997, allocations: 0.5536 MB / 0.8819 GB, free: 23.1 MB / 0.4948 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.004036/2.001, allocations: 0.7344 MB / 0.8826 GB, free: 23.08 MB / 0.4948 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.02962/2.031, allocations: 14.14 MB / 0.8964 GB, free: 22.54 MB / 0.4948 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.0003409/2.031, allocations: 7 kB / 0.8964 GB, free: 22.54 MB / 0.4948 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.00195/2.033, allocations: 290.9 kB / 0.8967 GB, free: 22.54 MB / 0.4948 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0001601/2.033, allocations: 171.8 kB / 0.8968 GB, free: 22.54 MB / 0.4948 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.03055/2.064, allocations: 21.89 MB / 0.9182 GB, free: 22.48 MB / 0.4948 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.08687/2.151, allocations: 43.85 MB / 0.961 GB, free: 7.508 MB / 0.4948 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.04006/2.191, allocations: 22.24 MB / 0.9827 GB, free: 13.2 MB / 0.5105 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.006429/2.197, allocations: 2.412 MB / 0.9851 GB, free: 12.54 MB / 0.5105 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001604/2.198, allocations: 123 kB / 0.9852 GB, free: 12.43 MB / 0.5105 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.006683/2.204, allocations: 0.717 MB / 0.9859 GB, free: 11.97 MB / 0.5105 GB
Notification: Performance of pre-optimization done (n=925): time 1.984e-05/2.204, allocations: 0 / 0.9859 GB, free: 11.97 MB / 0.5105 GB
Notification: Performance of matching and sorting (n=1305): time 0.8935/3.098, allocations: 116.6 MB / 1.1 GB, free: 81.21 MB / 0.5573 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001548/3.098, allocations: 184.2 kB / 1.1 GB, free: 81.14 MB / 0.5573 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.00805/3.106, allocations: 4.317 MB / 1.104 GB, free: 80.84 MB / 0.5573 GB
Notification: Performance of collectPreVariables (initialization): time 0.00282/3.109, allocations: 238.6 kB / 1.104 GB, free: 80.8 MB / 0.5573 GB
Notification: Performance of collectInitialEqns (initialization): time 0.002448/3.111, allocations: 2.893 MB / 1.107 GB, free: 80.14 MB / 0.5573 GB
Notification: Performance of collectInitialBindings (initialization): time 0.006037/3.118, allocations: 4.331 MB / 1.111 GB, free: 77.6 MB / 0.5573 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001504/3.119, allocations: 232 kB / 1.112 GB, free: 77.6 MB / 0.5573 GB
Notification: Performance of setup shared object (initialization): time 0.0006778/3.12, allocations: 0.7277 MB / 1.112 GB, free: 77.27 MB / 0.5573 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.01295/3.133, allocations: 8.384 MB / 1.121 GB, free: 77.25 MB / 0.5573 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.01524/3.148, allocations: 9.78 MB / 1.13 GB, free: 76.12 MB / 0.5573 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.01507/3.163, allocations: 9.101 MB / 1.139 GB, free: 75.99 MB / 0.5573 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.394e-05/3.163, allocations: 9.062 kB / 1.139 GB, free: 75.99 MB / 0.5573 GB
Notification: Performance of matching and sorting (n=1471) (initialization): time 0.06016/3.223, allocations: 22.99 MB / 1.161 GB, free: 68.1 MB / 0.5573 GB
Notification: Performance of prepare postOptimizeDAE: time 9.311e-05/3.223, allocations: 15.94 kB / 1.161 GB, free: 68.1 MB / 0.5573 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.803e-05/3.224, allocations: 26.22 kB / 1.161 GB, free: 68.1 MB / 0.5573 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.02312/3.247, allocations: 5.337 MB / 1.167 GB, free: 66.82 MB / 0.5573 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.01507/3.262, allocations: 2.48 MB / 1.169 GB, free: 66.74 MB / 0.5573 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.03168/3.294, allocations: 18.62 MB / 1.187 GB, free: 53.95 MB / 0.5573 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.01425/3.308, allocations: 486.2 kB / 1.188 GB, free: 53.74 MB / 0.5573 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.004466/3.312, allocations: 0.4942 MB / 1.188 GB, free: 53.65 MB / 0.5573 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 127
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (1295):
 * Single equations (assignments): 1288
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (linear and non-linear blocks): 0
 * Torn equation systems: 7
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems: 3 {(2,100.0%) 36,(1,100.0%) 3,(1,100.0%) 3}
 * Non-linear torn systems: 4 {3 99,1 3,1 26,1 3}
Notification: Performance of prepare postOptimizeDAE: time 0.01138/3.324, allocations: 1.385 MB / 1.19 GB, free: 52.8 MB / 0.5573 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.005438/3.329, allocations: 0.8166 MB / 1.19 GB, free: 52.37 MB / 0.5573 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.06682/3.396, allocations: 24.47 MB / 1.214 GB, free: 42.13 MB / 0.5573 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0001875/3.396, allocations: 138.4 kB / 1.214 GB, free: 42.13 MB / 0.5573 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0001122/3.396, allocations: 10.56 kB / 1.214 GB, free: 42.13 MB / 0.5573 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0005671/3.397, allocations: 72.53 kB / 1.215 GB, free: 42.13 MB / 0.5573 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.547/3.944, allocations: 115.3 MB / 1.327 GB, free: 93.83 MB / 0.573 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0002353/3.944, allocations: 54.88 kB / 1.327 GB, free: 93.83 MB / 0.573 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.01303/3.957, allocations: 2.41 MB / 1.329 GB, free: 93.83 MB / 0.573 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.02041/3.978, allocations: 5.134 MB / 1.335 GB, free: 93.72 MB / 0.573 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.004791/3.983, allocations: 446.2 kB / 1.335 GB, free: 93.72 MB / 0.573 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.02787/4.011, allocations: 17.54 MB / 1.352 GB, free: 86.02 MB / 0.573 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.195e-05/4.011, allocations: 79.19 kB / 1.352 GB, free: 86.02 MB / 0.573 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.08255/4.093, allocations: 46.16 MB / 1.397 GB, free: 61.71 MB / 0.573 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.004541/4.098, allocations: 0.9493 MB / 1.398 GB, free: 61.19 MB / 0.573 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.005712/4.104, allocations: 338.3 kB / 1.398 GB, free: 60.99 MB / 0.573 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0122/4.116, allocations: 474.3 kB / 1.399 GB, free: 60.79 MB / 0.573 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.003911/4.12, allocations: 1.074 MB / 1.4 GB, free: 60.62 MB / 0.573 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.002756/4.123, allocations: 0.5061 MB / 1.4 GB, free: 60.53 MB / 0.573 GB
Notification: Performance of sorting global known variables: time 0.006543/4.129, allocations: 3.31 MB / 1.404 GB, free: 59.29 MB / 0.573 GB
Notification: Performance of sort global known variables: time 4.31e-07/4.129, allocations: 2 kB / 1.404 GB, free: 59.29 MB / 0.573 GB
Notification: Performance of remove unused functions: time 0.02735/4.156, allocations: 6.126 MB / 1.41 GB, free: 58.62 MB / 0.573 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 236
 * Number of states: 34 (blood_erythrocytes.temperature,blood_erythrocytes.mass,blood_plasma.temperature,HCO3.logn,H2O.logn,HCO3_E.logn,H2O_E.logn,Cl_E.logn,Cl.logn,albumin.logn,permeableUncharged.logn,permeableUncharged_E.logn,chargedImpermeable_E.logn,Lac_E.logn,Lac.logn,H_E.logn,H.logn,CO2.logn,CO2_E.logn,O2.logn,O2_E.logn,K.logn,Na.logn,Na_E.logn,K_E.logn,H2PO4_E.logn,ADP_E.logn,ATP_E.logn,HPO4_E.logn,globulins.logn,Ca.logn,Mg.logn,DPG.logn,GSH.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1307):
 * Single equations (assignments): 1300
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (linear and non-linear blocks): 0
 * Torn equation systems: 7
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems: 3 {(2,100.0%) 36,(1,100.0%) 3,(1,100.0%) 3}
 * Non-linear torn systems: 4 {4 117,1 3,1 26,1 3}
Notification: Performance of Backend phase and start with SimCode phase: time 0.02271/4.179, allocations: 6.311 MB / 1.416 GB, free: 57.71 MB / 0.573 GB
Notification: Performance of simCode: created initialization part: time 0.03682/4.216, allocations: 20.56 MB / 1.436 GB, free: 45.5 MB / 0.573 GB
Notification: Performance of simCode: created event and clocks part: time 5.785e-05/4.216, allocations: 11.94 kB / 1.436 GB, free: 45.49 MB / 0.573 GB
Notification: Performance of simCode: created simulation system equations: time 0.01933/4.236, allocations: 11.24 MB / 1.447 GB, free: 35.32 MB / 0.573 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.01818/4.254, allocations: 2.563 MB / 1.449 GB, free: 33.49 MB / 0.573 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0499/4.304, allocations: 25.94 MB / 1.475 GB, free: 8.953 MB / 0.573 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.00846/4.312, allocations: 4.313 MB / 1.479 GB, free: 5.816 MB / 0.573 GB
Notification: Performance of simCode: alias equations: time 0.01475/4.327, allocations: 1.68 MB / 1.481 GB, free: 4.559 MB / 0.573 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.004556/4.332, allocations: 0.9377 MB / 1.481 GB, free: 3.77 MB / 0.573 GB
Notification: Performance of SimCode: time 1.503e-06/4.332, allocations: 0 / 1.481 GB, free: 3.77 MB / 0.573 GB
Notification: Performance of Templates: time 0.7268/5.058, allocations: 248.5 MB / 1.724 GB, free: 14.74 MB / 0.6042 GB
make -j1 -f Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.makefile
(rm -f Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.pipe ; mkfifo Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.pipe ; head -c 1048576 < Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.pipe >> ../files/Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.sim & ./Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.pipe 2>&1)