Running command: translateModel(BioChem.Examples.GMO.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GMO.cell") Notification: Performance of loadModel(BioChem): time 1.911/1.911, allocations: 217.9 MB / 230.1 MB, free: 14.32 MB / 202.7 MB Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl" Notification: Performance of FrontEnd - loaded program: time 3.502e-05/3.52e-05, allocations: 4 kB / 283.4 MB, free: 9.625 MB / 234.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.08992/0.08998, allocations: 50.41 MB / 333.8 MB, free: 7.121 MB / 282.7 MB Notification: Performance of FrontEnd - scodeFlatten: time 0.4721/0.5621, allocations: 87.23 MB / 421 MB, free: 8.348 MB / 346.7 MB Notification: Performance of FrontEnd - mkProgramGraph: time 0.0002567/0.5624, allocations: 57.22 kB / 421.1 MB, free: 8.32 MB / 346.7 MB Notification: Performance of FrontEnd - DAE generated: time 0.02668/0.5891, allocations: 4.74 MB / 425.8 MB, free: 4.23 MB / 346.7 MB Notification: Performance of FrontEnd: time 2.17e-06/0.5892, allocations: 0 / 425.8 MB, free: 4.23 MB / 346.7 MB Notification: Performance of Transformations before backend: time 1.448e-05/0.5892, allocations: 4 kB / 425.8 MB, free: 4.227 MB / 346.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 96 * Number of variables: 96 Notification: Performance of Generate backend data structure: time 0.0008791/0.5901, allocations: 0.5343 MB / 426.4 MB, free: 3.668 MB / 346.7 MB Notification: Performance of prepare preOptimizeDAE: time 3.982e-05/0.5901, allocations: 8.031 kB / 426.4 MB, free: 3.66 MB / 346.7 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 9.054e-05/0.5902, allocations: 35.62 kB / 426.4 MB, free: 3.625 MB / 346.7 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001953/0.5904, allocations: 202.5 kB / 426.6 MB, free: 3.387 MB / 346.7 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.83e-05/0.5905, allocations: 33.78 kB / 426.6 MB, free: 3.367 MB / 346.7 MB Notification: Performance of preOpt expandDerOperator (simulation): time 8.081e-05/0.5906, allocations: 40.14 kB / 426.7 MB, free: 3.34 MB / 346.7 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0006408/0.5912, allocations: 291.6 kB / 426.9 MB, free: 3.137 MB / 346.7 MB Notification: Performance of preOpt findStateOrder (simulation): time 2.027e-05/0.5913, allocations: 0 / 426.9 MB, free: 3.137 MB / 346.7 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.699e-05/0.5913, allocations: 18.06 kB / 427 MB, free: 3.133 MB / 346.7 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.749e-05/0.5914, allocations: 15.98 kB / 427 MB, free: 3.117 MB / 346.7 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005355/0.5919, allocations: 217.1 kB / 427.2 MB, free: 2.977 MB / 346.7 MB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002378/0.5943, allocations: 1.042 MB / 428.2 MB, free: 2.102 MB / 346.7 MB Notification: Performance of preOpt comSubExp (simulation): time 0.0004289/0.5947, allocations: 170.7 kB / 428.4 MB, free: 1.984 MB / 346.7 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.0002591/0.595, allocations: 123.1 kB / 428.5 MB, free: 1.906 MB / 346.7 MB Notification: Performance of preOpt evalFunc (simulation): time 2.715e-05/0.5951, allocations: 4.188 kB / 428.5 MB, free: 1.902 MB / 346.7 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.856e-05/0.5951, allocations: 38.44 kB / 428.6 MB, free: 1.859 MB / 346.7 MB Notification: Performance of pre-optimization done (n=22): time 2.864e-06/0.5951, allocations: 0 / 428.6 MB, free: 1.859 MB / 346.7 MB Notification: Performance of matching and sorting (n=26): time 0.002378/0.5975, allocations: 0.8366 MB / 429.4 MB, free: 1.109 MB / 346.7 MB Notification: Performance of inlineWhenForInitialization (initialization): time 5.045e-05/0.5976, allocations: 55.41 kB / 429.5 MB, free: 1.043 MB / 346.7 MB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001695/0.5978, allocations: 149.8 kB / 429.6 MB, free: 0.9023 MB / 346.7 MB Notification: Performance of collectPreVariables (initialization): time 3.217e-05/0.5978, allocations: 29.27 kB / 429.6 MB, free: 0.8711 MB / 346.7 MB Notification: Performance of collectInitialEqns (initialization): time 0.0001511/0.598, allocations: 214.7 kB / 429.8 MB, free: 0.6758 MB / 346.7 MB Notification: Performance of collectInitialBindings (initialization): time 9.14e-05/0.5981, allocations: 94.45 kB / 429.9 MB, free: 0.5938 MB / 346.7 MB Notification: Performance of simplifyInitialFunctions (initialization): time 1.763e-05/0.5981, allocations: 11.75 kB / 429.9 MB, free: 0.5898 MB / 346.7 MB Notification: Performance of setup shared object (initialization): time 0.0001672/0.5983, allocations: 330.4 kB / 430.3 MB, free: 272 kB / 346.7 MB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001844/0.5985, allocations: 78.56 kB / 430.3 MB, free: 220 kB / 346.7 MB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002856/0.5988, allocations: 188.9 kB / 430.5 MB, free: 20 kB / 346.7 MB Notification: Performance of analyzeInitialSystem (initialization): time 0.0002684/0.5991, allocations: 110.8 kB / 430.6 MB, free: 15.95 MB / 362.7 MB Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.62e-06/0.5991, allocations: 4.75 kB / 430.6 MB, free: 15.94 MB / 362.7 MB Notification: Performance of matching and sorting (n=46) (initialization): time 0.0007107/0.5998, allocations: 329.9 kB / 431 MB, free: 15.69 MB / 362.7 MB Notification: Performance of prepare postOptimizeDAE: time 2.097e-05/0.5998, allocations: 8 kB / 431 MB, free: 15.68 MB / 362.7 MB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.611e-05/0.5999, allocations: 7.953 kB / 431 MB, free: 15.68 MB / 362.7 MB Notification: Performance of postOpt tearingSystem (initialization): time 1.923e-05/0.5999, allocations: 4 kB / 431 MB, free: 15.67 MB / 362.7 MB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0004311/0.6003, allocations: 79.78 kB / 431.1 MB, free: 15.6 MB / 362.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.804e-05/0.6004, allocations: 11.92 kB / 431.1 MB, free: 15.59 MB / 362.7 MB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002218/0.6006, allocations: 20.25 kB / 431.1 MB, free: 15.57 MB / 362.7 MB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.354e-05/0.6007, allocations: 19.62 kB / 431.1 MB, free: 15.55 MB / 362.7 MB Warning: Assuming fixed start value for the following 5 variables: ambientSubstance.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real V:VARIABLE(start = 1.0 unit = "l" stateSelect=StateSelect.prefer ) "Compartment volume" type: Real C.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real M.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real X.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer ) "Number of moles of substance in pool (mol)" type: Real Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 16 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (46): * Single equations (assignments): 46 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0001959/0.6009, allocations: 133.6 kB / 431.2 MB, free: 15.43 MB / 362.7 MB Notification: Performance of postOpt lateInlineFunction (simulation): time 6.384e-05/0.601, allocations: 19.81 kB / 431.3 MB, free: 15.41 MB / 362.7 MB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 7.33e-05/0.601, allocations: 28.78 kB / 431.3 MB, free: 15.39 MB / 362.7 MB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.225e-05/0.6011, allocations: 7.953 kB / 431.3 MB, free: 15.39 MB / 362.7 MB Notification: Performance of postOpt constantLinearSystem (simulation): time 5.214e-06/0.6011, allocations: 0 / 431.3 MB, free: 15.39 MB / 362.7 MB Notification: Performance of postOpt simplifysemiLinear (simulation): time 7.306e-06/0.6011, allocations: 3.984 kB / 431.3 MB, free: 15.38 MB / 362.7 MB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0006633/0.6018, allocations: 358.6 kB / 431.7 MB, free: 15.05 MB / 362.7 MB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.136e-06/0.6018, allocations: 0 / 431.7 MB, free: 15.05 MB / 362.7 MB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0003616/0.6022, allocations: 47.91 kB / 431.7 MB, free: 15.01 MB / 362.7 MB Notification: Performance of postOpt tearingSystem (simulation): time 5.301e-06/0.6022, allocations: 3.938 kB / 431.7 MB, free: 15 MB / 362.7 MB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 2.967e-05/0.6022, allocations: 11.8 kB / 431.7 MB, free: 15 MB / 362.7 MB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.668e-06/0.6022, allocations: 3.953 kB / 431.7 MB, free: 14.99 MB / 362.7 MB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.851e-06/0.6022, allocations: 4 kB / 431.7 MB, free: 14.99 MB / 362.7 MB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.000737/0.603, allocations: 421.8 kB / 432.1 MB, free: 14.66 MB / 362.7 MB Notification: Performance of postOpt removeConstants (simulation): time 7.856e-05/0.6031, allocations: 92.95 kB / 432.2 MB, free: 14.55 MB / 362.7 MB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.687e-05/0.6031, allocations: 18.36 kB / 432.2 MB, free: 14.54 MB / 362.7 MB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001998/0.6034, allocations: 11.48 kB / 432.3 MB, free: 14.53 MB / 362.7 MB Notification: Performance of postOpt findZeroCrossings (simulation): time 4.331e-05/0.6034, allocations: 15.94 kB / 432.3 MB, free: 14.52 MB / 362.7 MB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.216e-05/0.6035, allocations: 11.62 kB / 432.3 MB, free: 14.51 MB / 362.7 MB Notification: Performance of sorting global known variables: time 0.0001146/0.6036, allocations: 114.2 kB / 432.4 MB, free: 14.41 MB / 362.7 MB Notification: Performance of sort global known variables: time 7.69e-07/0.6036, allocations: 0 / 432.4 MB, free: 14.41 MB / 362.7 MB Notification: Performance of remove unused functions: time 0.0004785/0.6041, allocations: 65.25 kB / 432.5 MB, free: 14.35 MB / 362.7 MB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 5 (V,C.n,M.n,X.n,ambientSubstance.n) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (26): * Single equations (assignments): 26 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001547/0.6042, allocations: 111.2 kB / 432.6 MB, free: 14.24 MB / 362.7 MB Notification: Performance of simCode: created initialization part: time 0.0005304/0.6048, allocations: 232.5 kB / 432.8 MB, free: 14.08 MB / 362.7 MB Notification: Performance of simCode: created event and clocks part: time 2.767e-06/0.6048, allocations: 4.125 kB / 432.8 MB, free: 14.07 MB / 362.7 MB Notification: Performance of simCode: created simulation system equations: time 0.0002063/0.605, allocations: 108.2 kB / 432.9 MB, free: 14 MB / 362.7 MB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002588/0.6053, allocations: 19.34 kB / 432.9 MB, free: 13.99 MB / 362.7 MB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.001533/0.6069, allocations: 0.6611 MB / 433.6 MB, free: 13.36 MB / 362.7 MB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0004919/0.6074, allocations: 0.7792 MB / 434.4 MB, free: 12.55 MB / 362.7 MB Notification: Performance of simCode: alias equations: time 0.0001622/0.6075, allocations: 26.06 kB / 434.4 MB, free: 12.53 MB / 362.7 MB Notification: Performance of simCode: all other stuff during SimCode phase: time 9.436e-05/0.6076, allocations: 23.44 kB / 434.4 MB, free: 12.51 MB / 362.7 MB Notification: Performance of SimCode: time 1.54e-06/0.6077, allocations: 0 / 434.4 MB, free: 12.51 MB / 362.7 MB Notification: Performance of Templates: time 0.006709/0.6144, allocations: 1.862 MB / 436.3 MB, free: 10.66 MB / 362.7 MB