Running command: "" <> buildModelFMU(BioChem.Examples.CircadianOscillator.Container,fileNamePrefix="BioChem_BioChem_Examples_CircadianOscillator_Container",fmuType="me",version="2.0",platforms={"static"})
Notification: Performance of loadModel(BioChem): time 2.382/2.382, allocations: 217.9 MB / 230 MB, free: 14.4 MB / 202.7 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - loaded program: time 3.435e-05/3.449e-05, allocations: 5.562 kB / 283.5 MB, free: 9.543 MB / 234.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.1091/0.1092, allocations: 50.41 MB / 333.9 MB, free: 7.035 MB / 282.7 MB
Notification: Performance of FrontEnd - scodeFlatten: time 0.5239/0.6332, allocations: 89.81 MB / 423.7 MB, free: 5.445 MB / 346.7 MB
Notification: Performance of FrontEnd - mkProgramGraph: time 0.00024/0.6335, allocations: 58.16 kB / 423.7 MB, free: 5.418 MB / 346.7 MB
[/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/omlibrary/BioChem 1.0.2/Examples/package.mo:1332:7-1333:85:writable] Warning: Connecting two signal sources while connecting cytoplasm.y5_node.V to nucleus.y5_node.V.
[/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/omlibrary/BioChem 1.0.2/Examples/package.mo:1334:7-1335:84:writable] Warning: Connecting two signal sources while connecting nucleus.y6_node.V to cytoplasm.y6_node.V.
[/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/omlibrary/BioChem 1.0.2/Examples/package.mo:1336:7-1337:84:writable] Warning: Connecting two signal sources while connecting cytoplasm.y2_node.V to nucleus.y2_node.V.
[/var/lib/jenkins/ws/OpenModelicaLibraryTestingWork/OpenModelica/OMCompiler/build/lib/omlibrary/BioChem 1.0.2/Examples/package.mo:1338:7-1339:85:writable] Warning: Connecting two signal sources while connecting nucleus.y3_node.V to cytoplasm.y3_node.V.
Notification: Performance of FrontEnd - DAE generated: time 0.1048/0.7383, allocations: 25.15 MB / 448.9 MB, free: 0.9062 MB / 362.7 MB
Notification: Performance of FrontEnd: time 2.534e-06/0.7384, allocations: 0 / 448.9 MB, free: 0.9062 MB / 362.7 MB
Notification: Performance of Transformations before backend: time 3.125e-05/0.7384, allocations: 16 kB / 448.9 MB, free: 0.8906 MB / 362.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 252
 * Number of variables: 252
Notification: Performance of Generate backend data structure: time 0.00262/0.7411, allocations: 0.92 MB / 449.8 MB, free: 15.98 MB / 378.7 MB
Notification: Performance of prepare preOptimizeDAE: time 5.846e-05/0.7412, allocations: 8.031 kB / 449.8 MB, free: 15.97 MB / 378.7 MB
Notification: Performance of preOpt introduceOutputAliases (simulation): time 0.0003962/0.7416, allocations: 152.4 kB / 450 MB, free: 15.88 MB / 378.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0002818/0.7419, allocations: 94.88 kB / 450.1 MB, free: 15.78 MB / 378.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0005162/0.7424, allocations: 292.7 kB / 450.4 MB, free: 15.46 MB / 378.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.396e-05/0.7425, allocations: 73.36 kB / 450.4 MB, free: 15.42 MB / 378.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002891/0.7428, allocations: 107.4 kB / 450.5 MB, free: 15.34 MB / 378.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.002671/0.7455, allocations: 0.8301 MB / 451.4 MB, free: 14.8 MB / 378.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.132e-05/0.7456, allocations: 8.484 kB / 451.4 MB, free: 14.79 MB / 378.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001227/0.7457, allocations: 40.38 kB / 451.4 MB, free: 14.78 MB / 378.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.688e-05/0.7458, allocations: 24 kB / 451.4 MB, free: 14.76 MB / 378.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001949/0.7478, allocations: 0.5769 MB / 452 MB, free: 14.36 MB / 378.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.008199/0.756, allocations: 2.853 MB / 454.9 MB, free: 11.42 MB / 378.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001755/0.7578, allocations: 0.498 MB / 455.4 MB, free: 10.9 MB / 378.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0007488/0.7586, allocations: 319 kB / 455.7 MB, free: 10.59 MB / 378.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 4.731e-05/0.7586, allocations: 4.438 kB / 455.7 MB, free: 10.58 MB / 378.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.652e-05/0.7587, allocations: 43 kB / 455.7 MB, free: 10.53 MB / 378.7 MB
Notification: Performance of pre-optimization done (n=50): time 3.697e-06/0.7587, allocations: 0 / 455.7 MB, free: 10.53 MB / 378.7 MB
Notification: Performance of matching and sorting (n=59): time 0.008975/0.7677, allocations: 2.01 MB / 457.7 MB, free: 8.477 MB / 378.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 6.797e-05/0.7678, allocations: 81.67 kB / 457.8 MB, free: 8.379 MB / 378.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005641/0.7684, allocations: 315.4 kB / 458.1 MB, free: 8.066 MB / 378.7 MB
Notification: Performance of collectPreVariables (initialization): time 7.725e-05/0.7685, allocations: 37.7 kB / 458.2 MB, free: 8.023 MB / 378.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0003713/0.7689, allocations: 442.2 kB / 458.6 MB, free: 7.582 MB / 378.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002606/0.7691, allocations: 228.8 kB / 458.8 MB, free: 7.355 MB / 378.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 5.755e-05/0.7692, allocations: 16 kB / 458.8 MB, free: 7.34 MB / 378.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001829/0.7694, allocations: 358.8 kB / 459.2 MB, free: 6.98 MB / 378.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006527/0.7701, allocations: 234.6 kB / 459.4 MB, free: 6.75 MB / 378.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0008541/0.7709, allocations: 466.5 kB / 459.9 MB, free: 6.164 MB / 378.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0008118/0.7718, allocations: 293.3 kB / 460.2 MB, free: 5.879 MB / 378.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.852e-06/0.7718, allocations: 0 / 460.2 MB, free: 5.879 MB / 378.7 MB
Notification: Performance of matching and sorting (n=107) (initialization): time 0.002101/0.7739, allocations: 0.7642 MB / 460.9 MB, free: 5.109 MB / 378.7 MB
Notification: Performance of prepare postOptimizeDAE: time 3.866e-05/0.774, allocations: 15.89 kB / 460.9 MB, free: 5.094 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.065e-05/0.774, allocations: 11.94 kB / 460.9 MB, free: 5.082 MB / 378.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 4.56e-05/0.7741, allocations: 16 kB / 461 MB, free: 5.066 MB / 378.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.00145/0.7755, allocations: 187.7 kB / 461.1 MB, free: 4.883 MB / 378.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.947e-05/0.7756, allocations: 19.92 kB / 461.2 MB, free: 4.863 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0007989/0.7765, allocations: 48.33 kB / 461.2 MB, free: 4.816 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.874e-05/0.7766, allocations: 40 kB / 461.3 MB, free: 4.777 MB / 378.7 MB
Warning: Assuming fixed start value for the following 12 variables:
         V:VARIABLE(start = 1.0 unit = "l" stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         cytoplasm.ambientSubstance.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         cytoplasm.y5.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         cytoplasm.y4.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         cytoplasm.y2.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         nucleus.V:VARIABLE(start = 1.0 unit = "l" stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         nucleus.y3.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         nucleus.y6.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         nucleus.y7.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         nucleus.ambientSubstance.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         cytoplasm.V:VARIABLE(start = 1.0 unit = "l" stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         cytoplasm.y1.n:VARIABLE(min = 0.0 unit = "mol" stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 39
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (107):
 * Single equations (assignments): 107
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (linear and non-linear blocks): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0004226/0.777, allocations: 196.3 kB / 461.4 MB, free: 4.586 MB / 378.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.00016/0.7772, allocations: 47.44 kB / 461.5 MB, free: 4.539 MB / 378.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002209/0.7774, allocations: 72.86 kB / 461.6 MB, free: 4.465 MB / 378.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.307e-05/0.7774, allocations: 8 kB / 461.6 MB, free: 4.457 MB / 378.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 8.576e-06/0.7775, allocations: 0 / 461.6 MB, free: 4.457 MB / 378.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.067e-05/0.7775, allocations: 3.984 kB / 461.6 MB, free: 4.453 MB / 378.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002068/0.7795, allocations: 0.7555 MB / 462.3 MB, free: 3.645 MB / 378.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 9.518e-06/0.7796, allocations: 0 / 462.3 MB, free: 3.645 MB / 378.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001226/0.7809, allocations: 107.9 kB / 462.4 MB, free: 3.539 MB / 378.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 1.609e-05/0.7809, allocations: 4 kB / 462.4 MB, free: 3.535 MB / 378.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 8.291e-05/0.781, allocations: 23.94 kB / 462.5 MB, free: 3.512 MB / 378.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.296e-05/0.781, allocations: 4 kB / 462.5 MB, free: 3.508 MB / 378.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.096e-06/0.781, allocations: 0 / 462.5 MB, free: 3.508 MB / 378.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002134/0.7832, allocations: 0.9299 MB / 463.4 MB, free: 2.559 MB / 378.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0002026/0.7834, allocations: 120.5 kB / 463.5 MB, free: 2.422 MB / 378.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001117/0.7835, allocations: 16 kB / 463.5 MB, free: 2.406 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005775/0.7841, allocations: 27.98 kB / 463.6 MB, free: 2.379 MB / 378.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001019/0.7842, allocations: 40.5 kB / 463.6 MB, free: 2.34 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.826e-05/0.7843, allocations: 8 kB / 463.6 MB, free: 2.332 MB / 378.7 MB
Notification: Performance of sorting global known variables: time 0.0004145/0.7847, allocations: 234.1 kB / 463.8 MB, free: 2.102 MB / 378.7 MB
Notification: Performance of sort global known variables: time 4.41e-07/0.7847, allocations: 0 / 463.8 MB, free: 2.102 MB / 378.7 MB
Notification: Performance of remove unused functions: time 0.001045/0.7858, allocations: 175.9 kB / 464 MB, free: 1.93 MB / 378.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 12 (V,nucleus.V,nucleus.y3.n,nucleus.y6.n,nucleus.y7.n,nucleus.ambientSubstance.n,cytoplasm.V,cytoplasm.y1.n,cytoplasm.y2.n,cytoplasm.y4.n,cytoplasm.y5.n,cytoplasm.ambientSubstance.n)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (59):
 * Single equations (assignments): 59
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (linear and non-linear blocks): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.002478/0.7883, allocations: 1.559 MB / 465.6 MB, free: 352 kB / 378.7 MB
Notification: Performance of simCode: created initialization part: time 0.001596/0.7899, allocations: 0.561 MB / 466.1 MB, free: 15.78 MB / 394.7 MB
Notification: Performance of simCode: created event and clocks part: time 6.603e-06/0.79, allocations: 0 / 466.1 MB, free: 15.78 MB / 394.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0006645/0.7906, allocations: 258 kB / 466.4 MB, free: 15.53 MB / 394.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0006233/0.7913, allocations: 50.45 kB / 466.4 MB, free: 15.48 MB / 394.7 MB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.005971/0.7973, allocations: 1.863 MB / 468.3 MB, free: 13.57 MB / 394.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.000703/0.798, allocations: 0.9568 MB / 469.2 MB, free: 12.59 MB / 394.7 MB
Notification: Performance of simCode: alias equations: time 0.0005953/0.7986, allocations: 60.59 kB / 469.3 MB, free: 12.53 MB / 394.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006417/0.7993, allocations: 279.5 kB / 469.6 MB, free: 12.25 MB / 394.7 MB
Notification: Performance of SimCode: time 4.048e-06/0.7993, allocations: 3.938 kB / 469.6 MB, free: 12.25 MB / 394.7 MB
Notification: Performance of buildModelFMU: Generate the FMI files: time 0.04303/0.8423, allocations: 10.05 MB / 479.6 MB, free: 2.281 MB / 394.7 MB
Notification: Performance of buildModelFMU: configured platform static using cached values: time 0.0003318/0.8427, allocations: 147.4 kB / 479.8 MB, free: 2.051 MB / 394.7 MB
Notification: Performance of buildModelFMU: Generate platform static: time 2.952/3.794, allocations: 3.938 kB / 479.8 MB, free: 2.047 MB / 394.7 MB