Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "[:1:22-1:33:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 13743895347 into a real Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0002719/0.0002719, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0002307/0.0002307, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.1222/0.1222, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Drugs/ATC/B/B02BD15.mo:9:22-9:32:writable] Warning: Modelica only supports 32-bit signed integers! Transforming: 6000000000 into a real [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 0.6851/0.6851, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 179] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: simulate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,startTime=0,stopTime=1,tolerance=1e-06,numberOfIntervals=500,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") simulate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,startTime=0,stopTime=1,tolerance=1e-06,numberOfIntervals=500,outputFormat="empty",variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1",simflags="-abortSlowSimulation -alarm=240 -lv LOG_STATS") [Timeout 900] "Notification: Performance of FrontEnd - loaded program: time 2.545e-06/2.545e-06, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - Absyn->SCode: time 2.178e-05/2.433e-05, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1): time 0.0008043/0.0008286, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.instExpressions: time 0.000135/0.0009635, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFInst.updateImplicitVariability: time 2.458e-05/0.0009881, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeComponents: time 1.807e-05/0.001006, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeBindings: time 4.348e-05/0.00105, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFTyping.typeClassSections: time 7.222e-05/0.001122, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.flatten: time 3.634e-05/0.001158, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.resolveConnections: time 2.057e-05/0.001179, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFEvalConstants.evaluate: time 2.79e-05/0.001207, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFSimplifyModel.simplify: time 3.863e-05/0.001245, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFPackage.collectConstants: time 7.935e-06/0.001253, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFFlatten.collectFunctions: time 5.079e-06/0.001258, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFScalarize.scalarize: time 1.328e-05/0.001272, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFVerifyModel.verify: time 1.105e-05/0.001283, allocations: 0 / 0, free: 0 / 0 Notification: Performance of NFConvertDAE.convert: time 2.978e-05/0.001312, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd - DAE generated: time 6.793e-06/0.001319, allocations: 0 / 0, free: 0 / 0 Notification: Performance of FrontEnd: time 1.633e-06/0.001321, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Transformations before backend: time 5.129e-06/0.001326, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3 * Number of variables: 3 Notification: Performance of Generate backend data structure: time 0.0002598/0.001586, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare preOptimizeDAE: time 5.148e-05/0.001637, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt normalInlineFunction (simulation): time 3.324e-05/0.001671, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evaluateParameters (simulation): time 5.684e-05/0.001727, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.221e-05/0.00174, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt expandDerOperator (simulation): time 1.931e-05/0.001759, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt clockPartitioning (simulation): time 9.912e-05/0.001858, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt findStateOrder (simulation): time 6.101e-06/0.001864, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.092e-05/0.001875, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.627e-06/0.001879, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeEqualRHS (simulation): time 1.404e-05/0.001893, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt removeSimpleEquations (simulation): time 8.002e-05/0.001973, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt comSubExp (simulation): time 0.0001901/0.002163, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt resolveLoops (simulation): time 2.098e-05/0.002184, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt evalFunc (simulation): time 7.635e-06/0.002191, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.636e-05/0.002208, allocations: 0 / 0, free: 0 / 0 Notification: Performance of pre-optimization done (n=3): time 4.158e-06/0.002212, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=3): time 0.0001055/0.002317, allocations: 0 / 0, free: 0 / 0 Notification: Performance of inlineWhenForInitialization (initialization): time 1.822e-05/0.002336, allocations: 0 / 0, free: 0 / 0 Notification: Performance of selectInitializationVariablesDAE (initialization): time 2.922e-05/0.002365, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectPreVariables (initialization): time 1.147e-05/0.002376, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialEqns (initialization): time 1.024e-05/0.002387, allocations: 0 / 0, free: 0 / 0 Notification: Performance of collectInitialBindings (initialization): time 2.324e-05/0.00241, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simplifyInitialFunctions (initialization): time 2.232e-05/0.002432, allocations: 0 / 0, free: 0 / 0 Notification: Performance of setup shared object (initialization): time 1.893e-05/0.002451, allocations: 0 / 0, free: 0 / 0 Notification: Performance of preBalanceInitialSystem (initialization): time 6.833e-06/0.002458, allocations: 0 / 0, free: 0 / 0 Notification: Performance of partitionIndependentBlocks (initialization): time 1.033e-05/0.002468, allocations: 0 / 0, free: 0 / 0 Notification: Performance of analyzeInitialSystem (initialization): time 3.618e-05/0.002504, allocations: 0 / 0, free: 0 / 0 Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.302e-06/0.002506, allocations: 0 / 0, free: 0 / 0 Notification: Performance of matching and sorting (n=6) (initialization): time 5.299e-05/0.002559, allocations: 0 / 0, free: 0 / 0 Notification: Performance of prepare postOptimizeDAE: time 1.087e-05/0.00257, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.306e-06/0.002573, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (initialization): time 1.086e-05/0.002584, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (initialization): time 3.757e-05/0.002621, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.865e-06/0.002624, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (initialization): time 2.026e-05/0.002644, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.29e-06/0.00265, allocations: 0 / 0, free: 0 / 0 Warning: Assuming fixed start value for the following 3 variables: V:VARIABLE(start = 10.0 fixed = true ) \"count of viral particles\" type: Real I:VARIABLE(start = 0.0 fixed = true ) \"count of infectious cells\" type: Real T:VARIABLE(start = 1e6 fixed = true ) \"count of target(susceptible) cells\" type: Real Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 1 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (6): * Single equations (assignments): 6 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 7.432e-05/0.002724, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt lateInlineFunction (simulation): time 7.735e-06/0.002732, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.14e-05/0.002753, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.823e-06/0.002755, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt constantLinearSystem (simulation): time 3.827e-06/0.002759, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.434e-06/0.002761, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeSimpleEquations (simulation): time 6.331e-05/0.002825, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.352e-06/0.002826, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt solveSimpleEquations (simulation): time 3.569e-05/0.002862, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt tearingSystem (simulation): time 2.575e-06/0.002864, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.055e-05/0.002875, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.363e-06/0.002876, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.733e-06/0.002878, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt symbolicJacobian (simulation): time 9.256e-05/0.00297, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt removeConstants (simulation): time 1.396e-05/0.002984, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.015e-05/0.003014, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt simplifyAllExpressions (simulation): time 1.551e-05/0.00303, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt findZeroCrossings (simulation): time 1.743e-05/0.003047, allocations: 0 / 0, free: 0 / 0 Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.318e-06/0.003052, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sorting global known variables: time 8.997e-06/0.003061, allocations: 0 / 0, free: 0 / 0 Notification: Performance of sort global known variables: time 1.001e-06/0.003062, allocations: 0 / 0, free: 0 / 0 Notification: Performance of remove unused functions: time 0.0002526/0.003314, allocations: 0 / 0, free: 0 / 0 Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 3 (V,I,T) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (3): * Single equations (assignments): 3 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 7.179e-05/0.003386, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created initialization part: time 6.815e-05/0.003454, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created event and clocks part: time 2.865e-06/0.003457, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created simulation system equations: time 1.363e-05/0.003471, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 8.322e-05/0.003554, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0002386/0.003793, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: some other stuff during SimCode phase: time 2.21e-05/0.003815, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: alias equations: time 1.651e-05/0.003831, allocations: 0 / 0, free: 0 / 0 Notification: Performance of simCode: all other stuff during SimCode phase: time 3.78e-05/0.003869, allocations: 0 / 0, free: 0 / 0 Notification: Performance of SimCode: time 1.847e-05/0.003888, allocations: 0 / 0, free: 0 / 0 Notification: Performance of Templates: time 0.0004715/0.004359, allocations: 0 / 0, free: 0 / 0 " [Timeout remaining time 900] [Calling sys.exit(0), Time elapsed: 1.4000468095764518]