Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Physiolibrary_Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1/package.mo): time 0.05264/0.05264, allocations: 11.15 MB / 31.01 MB, free: 4.762 MB / 24.77 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00147/0.00147, allocations: 90.73 kB / 38.74 MB, free: 6.816 MB / 33.03 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001806/0.001806, allocations: 170.3 kB / 42.15 MB, free: 3.488 MB / 33.03 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9791/0.9791, allocations: 177.2 MB / 222.6 MB, free: 6.285 MB / 202.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 3.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 3.0.0/package.mo): time 0.1753/0.1753, allocations: 17.62 MB / 296.7 MB, free: 1.27 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Physiolibrary with version 3.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 3.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Using package Chemical with version 1.4.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.1/package.mo)
Running command: translateModel(Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Physiolibrary_Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow")
translateModel(Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Physiolibrary_Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.383e-06/1.383e-06, allocations: 0 / 320.9 MB, free: 14.17 MB / 298.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.192e-05/2.33e-05, allocations: 2.312 kB / 320.9 MB, free: 14.16 MB / 298.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 3.0.0/Thermal.mo:312:7-312:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Physiolibrary 3.0.0/Thermal.mo:312:7-312:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow): time 0.03765/0.03767, allocations: 31.78 MB / 352.7 MB, free: 14.56 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.0007507/0.03842, allocations: 474.6 kB / 353.1 MB, free: 14.1 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 7.912e-05/0.0385, allocations: 3.938 kB / 353.1 MB, free: 14.09 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0001036/0.03861, allocations: 23.73 kB / 353.2 MB, free: 14.07 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 8.564e-05/0.03869, allocations: 51.61 kB / 353.2 MB, free: 14.02 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 4.178e-05/0.03873, allocations: 7.984 kB / 353.2 MB, free: 14.01 MB / 330.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0001161/0.03885, allocations: 111.2 kB / 353.3 MB, free: 13.9 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 9.028e-05/0.03894, allocations: 25.89 kB / 353.4 MB, free: 13.88 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 6.679e-05/0.03901, allocations: 59.81 kB / 353.4 MB, free: 13.82 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 5.821e-05/0.03906, allocations: 23.92 kB / 353.4 MB, free: 13.8 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 1.844e-05/0.03908, allocations: 8 kB / 353.4 MB, free: 13.79 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 8.597e-06/0.03909, allocations: 4 kB / 353.5 MB, free: 13.79 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 1.613e-05/0.03911, allocations: 11.88 kB / 353.5 MB, free: 13.77 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 2.96e-05/0.03914, allocations: 31.92 kB / 353.5 MB, free: 13.74 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.0001113/0.03925, allocations: 67.75 kB / 353.6 MB, free: 13.68 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.968e-06/0.03925, allocations: 0 / 353.6 MB, free: 13.68 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.092e-06/0.03925, allocations: 0 / 353.6 MB, free: 13.68 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 4.258e-06/0.03926, allocations: 0 / 353.6 MB, free: 13.68 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11
 * Number of variables: 11
Notification: Performance of Generate backend data structure: time 0.0002668/0.03953, allocations: 309 kB / 353.9 MB, free: 13.35 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.037e-05/0.03956, allocations: 8.031 kB / 353.9 MB, free: 13.34 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 2.387e-05/0.03958, allocations: 12.92 kB / 353.9 MB, free: 13.33 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001501/0.03973, allocations: 169.4 kB / 354 MB, free: 13.14 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.753e-06/0.03974, allocations: 4.375 kB / 354.1 MB, free: 13.14 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 7.505e-06/0.03974, allocations: 8.375 kB / 354.1 MB, free: 13.13 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 6.257e-05/0.03981, allocations: 42.25 kB / 354.1 MB, free: 13.08 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.56e-06/0.03981, allocations: 192 / 354.1 MB, free: 13.08 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.261e-06/0.03982, allocations: 4.375 kB / 354.1 MB, free: 13.08 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.18e-06/0.03982, allocations: 7.922 kB / 354.1 MB, free: 13.07 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 1.662e-05/0.03984, allocations: 11.98 kB / 354.1 MB, free: 13.06 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002432/0.04008, allocations: 350.5 kB / 354.5 MB, free: 12.7 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 5.095e-05/0.04013, allocations: 169.1 kB / 354.6 MB, free: 12.52 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 1.891e-05/0.04015, allocations: 84.14 kB / 354.7 MB, free: 12.44 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 1.69e-05/0.04017, allocations: 75.28 kB / 354.8 MB, free: 12.36 MB / 330.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.173e-05/0.0402, allocations: 109.8 kB / 354.9 MB, free: 12.25 MB / 330.7 MB
Notification: Performance of pre-optimization done (n=0): time 7.51e-07/0.0402, allocations: 0 / 354.9 MB, free: 12.25 MB / 330.7 MB
Notification: Performance of matching and sorting (n=0): time 5.065e-05/0.04025, allocations: 37.62 kB / 354.9 MB, free: 12.2 MB / 330.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.813e-05/0.04029, allocations: 126.7 kB / 355.1 MB, free: 12.07 MB / 330.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 8.766e-05/0.04038, allocations: 156.2 kB / 355.2 MB, free: 11.9 MB / 330.7 MB
Notification: Performance of collectPreVariables (initialization): time 7.404e-06/0.04039, allocations: 25.7 kB / 355.2 MB, free: 11.87 MB / 330.7 MB
Notification: Performance of collectInitialEqns (initialization): time 4.633e-05/0.04043, allocations: 116.1 kB / 355.3 MB, free: 11.75 MB / 330.7 MB
Notification: Performance of collectInitialBindings (initialization): time 1.532e-06/0.04043, allocations: 3.938 kB / 355.4 MB, free: 11.75 MB / 330.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 2.111e-05/0.04046, allocations: 17.7 kB / 355.4 MB, free: 11.72 MB / 330.7 MB
Notification: Performance of setup shared object (initialization): time 7.061e-05/0.04053, allocations: 326.8 kB / 355.7 MB, free: 11.39 MB / 330.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 4.408e-06/0.04053, allocations: 0 / 355.7 MB, free: 11.39 MB / 330.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 5.27e-06/0.04054, allocations: 4 kB / 355.7 MB, free: 11.39 MB / 330.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 1.937e-05/0.04055, allocations: 4.859 kB / 355.7 MB, free: 11.38 MB / 330.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.262e-06/0.04056, allocations: 0 / 355.7 MB, free: 11.38 MB / 330.7 MB
Notification: Performance of matching and sorting (n=1) (initialization): time 5.797e-05/0.04061, allocations: 41.62 kB / 355.7 MB, free: 11.34 MB / 330.7 MB
Notification: Performance of prepare postOptimizeDAE: time 9.517e-06/0.04062, allocations: 4 kB / 355.7 MB, free: 11.33 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.577e-06/0.04063, allocations: 0 / 355.7 MB, free: 11.33 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 9.438e-06/0.04064, allocations: 4.094 kB / 355.7 MB, free: 11.33 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 2.838e-05/0.04066, allocations: 4 kB / 355.7 MB, free: 11.32 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.224e-06/0.04067, allocations: 0 / 355.7 MB, free: 11.32 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 1.708e-05/0.04068, allocations: 0 / 355.7 MB, free: 11.32 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.886e-06/0.04069, allocations: 0 / 355.7 MB, free: 11.32 MB / 330.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 6.19e-05/0.04075, allocations: 189.1 kB / 355.9 MB, free: 11.13 MB / 330.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 4.001e-05/0.04079, allocations: 116.9 kB / 356 MB, free: 11.01 MB / 330.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 3.658e-05/0.04083, allocations: 109.5 kB / 356.2 MB, free: 10.89 MB / 330.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.772e-05/0.04086, allocations: 180.2 kB / 356.3 MB, free: 10.71 MB / 330.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 3.795e-05/0.0409, allocations: 180.2 kB / 356.5 MB, free: 10.53 MB / 330.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.052e-05/0.04094, allocations: 180.3 kB / 356.7 MB, free: 10.34 MB / 330.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001381/0.04108, allocations: 346.1 kB / 357 MB, free: 9.98 MB / 330.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.282e-05/0.0411, allocations: 104.9 kB / 357.1 MB, free: 9.871 MB / 330.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 2.317e-05/0.04113, allocations: 105 kB / 357.2 MB, free: 9.762 MB / 330.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 3.91e-05/0.04117, allocations: 184.2 kB / 357.4 MB, free: 9.574 MB / 330.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 3.888e-05/0.0412, allocations: 180.3 kB / 357.6 MB, free: 9.391 MB / 330.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.005e-05/0.04124, allocations: 184.2 kB / 357.8 MB, free: 9.203 MB / 330.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 4.093e-05/0.04128, allocations: 180.3 kB / 357.9 MB, free: 9.02 MB / 330.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 9.448e-05/0.04138, allocations: 311.8 kB / 358.2 MB, free: 8.691 MB / 330.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 3.492e-05/0.04141, allocations: 116.9 kB / 358.4 MB, free: 8.57 MB / 330.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002991/0.04171, allocations: 180.2 kB / 358.5 MB, free: 8.387 MB / 330.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 4.98e-05/0.04176, allocations: 105.3 kB / 358.6 MB, free: 8.277 MB / 330.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 3.768e-05/0.0418, allocations: 180.3 kB / 358.8 MB, free: 8.094 MB / 330.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 2.124e-05/0.04182, allocations: 109 kB / 358.9 MB, free: 7.98 MB / 330.7 MB
Notification: Performance of sorting global known variables: time 3.268e-05/0.04185, allocations: 41.52 kB / 359 MB, free: 7.938 MB / 330.7 MB
Notification: Performance of sort global known variables: time 5e-08/0.04185, allocations: 0 / 359 MB, free: 7.938 MB / 330.7 MB
Notification: Performance of remove unused functions: time 0.0001261/0.04198, allocations: 19.89 kB / 359 MB, free: 7.918 MB / 330.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (0):
 * Single equations (assignments): 0
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 7.948e-05/0.04206, allocations: 147.7 kB / 359.1 MB, free: 7.762 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 3.693e-05/0.0421, allocations: 4.859 kB / 359.1 MB, free: 7.754 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 3.627e-06/0.0421, allocations: 4 kB / 359.1 MB, free: 7.75 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 1.011e-06/0.0421, allocations: 4.062 kB / 359.1 MB, free: 7.746 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002847/0.04239, allocations: 0.5119 MB / 359.6 MB, free: 7.234 MB / 330.7 MB
Error: Error parsing unit kcal/(kg.K): Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0006054/0.04299, allocations: 304.5 kB / 359.9 MB, free: 6.91 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 3.104e-05/0.04302, allocations: 63.34 kB / 360 MB, free: 6.828 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 3.539e-05/0.04306, allocations: 16.45 kB / 360 MB, free: 6.812 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 6.879e-05/0.04313, allocations: 71.3 kB / 360.1 MB, free: 6.742 MB / 330.7 MB
Notification: Performance of SimCode: time 6.41e-07/0.04313, allocations: 0 / 360.1 MB, free: 6.742 MB / 330.7 MB
Notification: Performance of Templates: time 0.002706/0.04583, allocations: 1.374 MB / 361.5 MB, free: 5.406 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Physiolibrary_Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow.makefile [Timeout 660]
(rm -f Physiolibrary_Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow.pipe ; mkfifo Physiolibrary_Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow.pipe ; head -c 1048576 < Physiolibrary_Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow.pipe >> ../files/Physiolibrary_Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow.sim & ./Physiolibrary_Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Physiolibrary_Physiolibrary.Thermal.Examples.SkinHeatTransferOnBloodFlow.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 2.734294603113085]