Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009151/0.0009151, allocations: 80.94 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009371/0.0009371, allocations: 177 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9662/0.9662, allocations: 177.2 MB / 203.8 MB, free: 5.477 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.632/1.632, allocations: 273.5 MB / 0.5213 GB, free: 14.68 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body")
translateModel(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.472e-06/1.472e-06, allocations: 1.203 kB / 0.5955 GB, free: 2.629 MB / 0.5105 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.196e-05/2.343e-05, allocations: 2.312 kB / 0.5955 GB, free: 2.625 MB / 0.5105 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body): time 0.008422/0.008446, allocations: 11.59 MB / 0.6069 GB, free: 7.094 MB / 0.5261 GB
Notification: Performance of NFInst.instExpressions: time 0.005719/0.01416, allocations: 2.587 MB / 0.6094 GB, free: 4.512 MB / 0.5261 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00126/0.01543, allocations: 20 kB / 0.6094 GB, free: 4.492 MB / 0.5261 GB
Notification: Performance of NFTyping.typeComponents: time 0.0006774/0.0161, allocations: 301 kB / 0.6097 GB, free: 4.195 MB / 0.5261 GB
Notification: Performance of NFTyping.typeBindings: time 0.001686/0.01779, allocations: 0.7899 MB / 0.6105 GB, free: 3.398 MB / 0.5261 GB
Notification: Performance of NFTyping.typeClassSections: time 0.001077/0.01887, allocations: 0.5913 MB / 0.611 GB, free: 2.812 MB / 0.5261 GB
Notification: Performance of NFFlatten.flatten: time 0.3474/0.3663, allocations: 2.861 MB / 0.6138 GB, free: 41.62 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.003206/0.3695, allocations: 3.251 MB / 0.617 GB, free: 41.28 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.002671/0.3721, allocations: 2.567 MB / 0.6195 GB, free: 41.28 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.002345/0.3745, allocations: 1.98 MB / 0.6215 GB, free: 41.19 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.0004431/0.3749, allocations: 425.7 kB / 0.6219 GB, free: 41.19 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0004872/0.3754, allocations: 424.4 kB / 0.6223 GB, free: 41.19 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 0.0004125/0.3758, allocations: 0.9256 MB / 0.6232 GB, free: 40.78 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0008339/0.3767, allocations: 1.299 MB / 0.6244 GB, free: 40.35 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.001663/0.3783, allocations: 2.589 MB / 0.627 GB, free: 38.89 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 5.981e-06/0.3783, allocations: 2.875 kB / 0.627 GB, free: 38.89 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.302e-06/0.3783, allocations: 0 / 0.627 GB, free: 38.89 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 1.842e-05/0.3784, allocations: 0.5625 kB / 0.627 GB, free: 38.89 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 449
 * Number of variables: 449
Notification: Performance of Generate backend data structure: time 0.003513/0.3819, allocations: 2.692 MB / 0.6296 GB, free: 36.99 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.607e-05/0.3819, allocations: 8.438 kB / 0.6296 GB, free: 36.99 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0004537/0.3824, allocations: 293 kB / 0.6299 GB, free: 36.88 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0009116/0.3833, allocations: 0.6702 MB / 0.6305 GB, free: 36.47 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.702e-05/0.3833, allocations: 134.8 kB / 0.6307 GB, free: 36.41 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002829/0.3836, allocations: 212 kB / 0.6309 GB, free: 36.34 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.002323/0.386, allocations: 2.745 MB / 0.6335 GB, free: 34.57 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 4.852e-05/0.386, allocations: 20.16 kB / 0.6336 GB, free: 34.56 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001767/0.3862, allocations: 74.38 kB / 0.6336 GB, free: 34.5 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.057e-05/0.3862, allocations: 42 kB / 0.6337 GB, free: 34.5 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001528/0.3877, allocations: 1.392 MB / 0.635 GB, free: 34.07 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.007299/0.395, allocations: 4.92 MB / 0.6398 GB, free: 31.41 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.001206/0.3962, allocations: 0.8528 MB / 0.6407 GB, free: 31.08 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0006455/0.3969, allocations: 0.5447 MB / 0.6412 GB, free: 30.8 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 6.483e-05/0.397, allocations: 40.81 kB / 0.6412 GB, free: 30.8 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.00106/0.398, allocations: 1.424 MB / 0.6426 GB, free: 29.71 MB / 0.5262 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.003628/0.4016, allocations: 1.889 MB / 0.6445 GB, free: 29.25 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=198): time 4.369e-06/0.4016, allocations: 0 / 0.6445 GB, free: 29.25 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=202): time 0.005178/0.4068, allocations: 3.908 MB / 0.6483 GB, free: 27.34 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 7.303e-05/0.4069, allocations: 406.9 kB / 0.6487 GB, free: 26.89 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004367/0.4073, allocations: 0.7626 MB / 0.6494 GB, free: 26.59 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 0.000148/0.4075, allocations: 80.72 kB / 0.6495 GB, free: 26.52 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.000168/0.4077, allocations: 0.5591 MB / 0.6501 GB, free: 26.09 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0003259/0.408, allocations: 0.7338 MB / 0.6508 GB, free: 25.49 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0005263/0.4085, allocations: 0.514 MB / 0.6513 GB, free: 25.18 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 2.287e-05/0.4085, allocations: 301.7 kB / 0.6516 GB, free: 24.88 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006845/0.4092, allocations: 0.762 MB / 0.6523 GB, free: 24.43 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0007735/0.41, allocations: 1.265 MB / 0.6535 GB, free: 23.33 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.002237/0.4122, allocations: 2.77 MB / 0.6562 GB, free: 21.27 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.901e-06/0.4122, allocations: 4 kB / 0.6562 GB, free: 21.27 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=298) (initialization): time 0.001872/0.4141, allocations: 2.028 MB / 0.6582 GB, free: 19.2 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 6.208e-05/0.4142, allocations: 267.4 kB / 0.6585 GB, free: 18.88 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.216e-05/0.4142, allocations: 18.41 kB / 0.6585 GB, free: 18.86 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.362e-05/0.4142, allocations: 27.94 kB / 0.6585 GB, free: 18.84 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.002005/0.4162, allocations: 0.9626 MB / 0.6595 GB, free: 17.91 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.518e-05/0.4162, allocations: 34.73 kB / 0.6595 GB, free: 17.88 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0009184/0.4171, allocations: 99.94 kB / 0.6596 GB, free: 17.79 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001731/0.4173, allocations: 151.7 kB / 0.6597 GB, free: 17.64 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 42 variables:
         venous.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         lungs.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         arterial.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         adipose.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         bone.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         brain.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         heart.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         muscle.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         skin.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         gut.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         spleen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         liver.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         kidney.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         gonads.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         rest.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         lumenCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicOralDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicOralDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicOralDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIMDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicIMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIVDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIVDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIADose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicIADose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         nasal_mucosa.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicNasalDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicNasalDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicNasalDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicNasalDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicNasalDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicIMDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicIMDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicOralDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicOralDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         lumenCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         lumenCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicNasalDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         periodicIMDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         periodicOralDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         lumenCompartment.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 55
 * Number of states: 0 ()
 * Number of discrete variables: 57 ($PRE.periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.Cmin,$PRE.periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmax,$PRE.periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.Cmin,$PRE.periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmax,$PRE.periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.Cmin,$PRE.periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmax,$PRE.lumenCompartment.Cmin,lumenCompartment.Cmin,$PRE.lumenCompartment.Cmax,lumenCompartment.Cmax,$PRE.periodicNasalDose.pulse.count,$PRE.periodicNasalDose.pulse.T_start,$PRE.periodicNasalDose.absorptionLumen.rising,$PRE.periodicIADose.pulse.count,$PRE.periodicIADose.pulse.T_start,$PRE.periodicIVDose.pulse.count,$PRE.periodicIVDose.pulse.T_start,$PRE.periodicIMDose.pulse.count,$PRE.periodicIMDose.pulse.T_start,$PRE.periodicIMDose.absorptionLumen.rising,$PRE.periodicOralDose.pulse.count,$PRE.periodicOralDose.pulse.T_start,$PRE.periodicOralDose.absorptionLumen.rising,$PRE.lumenCompartment.rising,periodicNasalDose.pulse.count,periodicNasalDose.pulse.T_start,periodicNasalDose.absorptionLumen.rising,periodicIADose.pulse.count,periodicIADose.pulse.T_start,periodicIVDose.pulse.count,periodicIVDose.pulse.T_start,periodicIMDose.pulse.count,periodicIMDose.pulse.T_start,periodicIMDose.absorptionLumen.rising,periodicOralDose.pulse.count,periodicOralDose.pulse.T_start,periodicOralDose.absorptionLumen.rising,lumenCompartment.rising,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,$whenCondition13)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (289):
 * Single equations (assignments): 280
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0005687/0.4179, allocations: 0.5365 MB / 0.6603 GB, free: 17.14 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002879/0.4182, allocations: 163.9 kB / 0.6604 GB, free: 16.98 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002168/0.4203, allocations: 2.001 MB / 0.6624 GB, free: 15 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.726e-06/0.4203, allocations: 23.98 kB / 0.6624 GB, free: 14.98 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.715e-06/0.4203, allocations: 3.938 kB / 0.6624 GB, free: 14.98 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.103e-05/0.4204, allocations: 7.969 kB / 0.6624 GB, free: 14.97 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002692/0.423, allocations: 2.336 MB / 0.6647 GB, free: 12.72 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.428e-06/0.4231, allocations: 2 kB / 0.6647 GB, free: 12.72 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001352/0.4244, allocations: 480.6 kB / 0.6652 GB, free: 12.27 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 6.493e-06/0.4244, allocations: 8 kB / 0.6652 GB, free: 12.26 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001202/0.4245, allocations: 91.86 kB / 0.6652 GB, free: 12.17 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.199e-06/0.4245, allocations: 8 kB / 0.6653 GB, free: 12.16 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.433e-06/0.4245, allocations: 0 / 0.6653 GB, free: 12.16 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002096/0.4266, allocations: 2.219 MB / 0.6674 GB, free: 9.891 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0004177/0.4271, allocations: 189.4 kB / 0.6676 GB, free: 9.707 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001983/0.4272, allocations: 63.88 kB / 0.6677 GB, free: 9.645 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0009333/0.4282, allocations: 79.94 kB / 0.6677 GB, free: 9.566 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002047/0.4284, allocations: 161.7 kB / 0.6679 GB, free: 9.41 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001076/0.4285, allocations: 75.84 kB / 0.668 GB, free: 9.336 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.0002364/0.4287, allocations: 422.5 kB / 0.6684 GB, free: 8.957 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 7e-08/0.4287, allocations: 0 / 0.6684 GB, free: 8.957 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.001021/0.4298, allocations: 0.6328 MB / 0.669 GB, free: 8.324 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 2
 * Number of states: 52 (venous.M,venous.AUC,lungs.M,lungs.AUC,arterial.M,arterial.AUC,adipose.M,adipose.AUC,bone.M,bone.AUC,brain.M,brain.AUC,heart.M,heart.AUC,muscle.M,muscle.AUC,skin.M,skin.AUC,gut.M,gut.AUC,spleen.M,spleen.AUC,liver.M,liver.AUC,kidney.M,kidney.AUC,kidneyElim.MExc,liverElim.MExc,gonads.M,gonads.AUC,rest.M,rest.AUC,lumenCompartment.C,lumenCompartment.AUC,periodicOralDose.TotalCumulativeMass,periodicOralDose.absorptionLumen.C,periodicOralDose.absorptionLumen.AUC,periodicOralDose.variableDose.TotalCumulativeMass,periodicIMDose.TotalCumulativeMass,periodicIMDose.absorptionLumen.C,periodicIMDose.absorptionLumen.AUC,periodicIMDose.variableDose.TotalCumulativeMass,periodicIVDose.TotalCumulativeMass,periodicIVDose.variableDose.TotalCumulativeMass,periodicIADose.TotalCumulativeMass,periodicIADose.variableDose.TotalCumulativeMass,nasal_mucosa.M,nasal_mucosa.AUC,periodicNasalDose.TotalCumulativeMass,periodicNasalDose.absorptionLumen.C,periodicNasalDose.absorptionLumen.AUC,periodicNasalDose.variableDose.TotalCumulativeMass)
 * Number of discrete variables: 35 ($whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,lumenCompartment.Cmax,lumenCompartment.Cmin,lumenCompartment.rising,periodicOralDose.absorptionLumen.Cmax,periodicOralDose.absorptionLumen.Cmin,periodicOralDose.absorptionLumen.rising,periodicOralDose.pulse.T_start,periodicOralDose.pulse.count,periodicIMDose.absorptionLumen.Cmax,periodicIMDose.absorptionLumen.Cmin,periodicIMDose.absorptionLumen.rising,periodicIMDose.pulse.T_start,periodicIMDose.pulse.count,periodicIVDose.pulse.T_start,periodicIVDose.pulse.count,periodicIADose.pulse.T_start,periodicIADose.pulse.count,periodicNasalDose.absorptionLumen.Cmax,periodicNasalDose.absorptionLumen.Cmin,periodicNasalDose.absorptionLumen.rising,periodicNasalDose.pulse.T_start,periodicNasalDose.pulse.count)
 * Number of discrete states: 25 (periodicOralDose.pulse.count,periodicIMDose.pulse.count,periodicIVDose.pulse.count,periodicIADose.pulse.count,periodicNasalDose.pulse.count,periodicNasalDose.absorptionLumen.Cmin,$whenCondition8,periodicNasalDose.absorptionLumen.Cmax,$whenCondition7,periodicNasalDose.absorptionLumen.rising,periodicIMDose.absorptionLumen.Cmin,$whenCondition6,periodicIMDose.absorptionLumen.Cmax,$whenCondition5,periodicIMDose.absorptionLumen.rising,periodicOralDose.absorptionLumen.Cmin,$whenCondition4,periodicOralDose.absorptionLumen.Cmax,$whenCondition3,periodicOralDose.absorptionLumen.rising,lumenCompartment.Cmin,$whenCondition2,lumenCompartment.Cmax,$whenCondition1,lumenCompartment.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (190):
 * Single equations (assignments): 176
 * Array equations: 0
 * Algorithm blocks: 4
 * Record equations: 0
 * When equations: 10
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0002251/0.43, allocations: 188.4 kB / 0.6692 GB, free: 8.156 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.001725/0.4317, allocations: 2.24 MB / 0.6714 GB, free: 5.793 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 9.938e-06/0.4317, allocations: 13.5 kB / 0.6714 GB, free: 5.781 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0007959/0.4325, allocations: 1.026 MB / 0.6724 GB, free: 4.738 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001164/0.4337, allocations: 0.5668 MB / 0.6729 GB, free: 4.203 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004301/0.438, allocations: 3.925 MB / 0.6768 GB, free: 320 kB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001908/0.4382, allocations: 325.9 kB / 0.6771 GB, free: 15.97 MB / 0.5418 GB
Notification: Performance of simCode: alias equations: time 0.001688/0.4399, allocations: 0.4957 MB / 0.6775 GB, free: 15.6 MB / 0.5418 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.00187/0.4417, allocations: 0.6657 MB / 0.6782 GB, free: 14.93 MB / 0.5418 GB
Notification: Performance of SimCode: time 1.263e-06/0.4417, allocations: 0 / 0.6782 GB, free: 14.93 MB / 0.5418 GB
Notification: Performance of Templates: time 0.05169/0.4934, allocations: 44.41 MB / 0.7216 GB, free: 4.152 MB / 0.573 GB
"
[Timeout remaining time 659]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.sim & ./Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Pharmacokinetic.Models.PBPK_whole_body.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.558214959222823]