Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001336/0.001336, allocations: 80.88 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001726/0.001726, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.019/1.019, allocations: 177.1 MB / 203.8 MB, free: 5.477 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.71/1.71, allocations: 273.5 MB / 0.5213 GB, free: 14.68 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.343e-06/1.343e-06, allocations: 0 / 0.5954 GB, free: 2.711 MB / 0.5105 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.29e-05/2.425e-05, allocations: 5.406 kB / 0.5954 GB, free: 2.707 MB / 0.5105 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment): time 0.005368/0.005392, allocations: 6.646 MB / 0.6019 GB, free: 12.14 MB / 0.5261 GB Notification: Performance of NFInst.instExpressions: time 0.003516/0.008908, allocations: 2.073 MB / 0.604 GB, free: 10.07 MB / 0.5261 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0005758/0.009484, allocations: 12 kB / 0.604 GB, free: 10.05 MB / 0.5261 GB Notification: Performance of NFTyping.typeComponents: time 0.0006595/0.01014, allocations: 297.6 kB / 0.6043 GB, free: 9.762 MB / 0.5261 GB Notification: Performance of NFTyping.typeBindings: time 0.0007826/0.01093, allocations: 472 kB / 0.6047 GB, free: 9.297 MB / 0.5261 GB Notification: Performance of NFTyping.typeClassSections: time 0.0009884/0.01191, allocations: 0.5303 MB / 0.6052 GB, free: 8.766 MB / 0.5261 GB Notification: Performance of NFFlatten.flatten: time 0.001629/0.01354, allocations: 1.797 MB / 0.607 GB, free: 6.961 MB / 0.5261 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003899/0.01393, allocations: 277.5 kB / 0.6072 GB, free: 6.672 MB / 0.5261 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0009454/0.01488, allocations: 0.92 MB / 0.6081 GB, free: 5.75 MB / 0.5261 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0005832/0.01546, allocations: 0.5219 MB / 0.6087 GB, free: 5.227 MB / 0.5261 GB Notification: Performance of NFPackage.collectConstants: time 0.0001734/0.01564, allocations: 172 kB / 0.6088 GB, free: 5.059 MB / 0.5261 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000456/0.01609, allocations: 311.3 kB / 0.6091 GB, free: 4.754 MB / 0.5261 GB Notification: Performance of NFScalarize.scalarize: time 0.0002347/0.01633, allocations: 370.6 kB / 0.6095 GB, free: 4.391 MB / 0.5261 GB Notification: Performance of NFVerifyModel.verify: time 0.000416/0.01674, allocations: 0.5222 MB / 0.61 GB, free: 3.867 MB / 0.5261 GB Notification: Performance of NFConvertDAE.convert: time 0.001249/0.01799, allocations: 1.378 MB / 0.6113 GB, free: 2.484 MB / 0.5261 GB Notification: Performance of FrontEnd - DAE generated: time 4.438e-06/0.018, allocations: 0 / 0.6113 GB, free: 2.484 MB / 0.5261 GB Notification: Performance of FrontEnd: time 1.713e-06/0.018, allocations: 0 / 0.6113 GB, free: 2.484 MB / 0.5261 GB Notification: Performance of Transformations before backend: time 1.493e-05/0.01801, allocations: 0 / 0.6113 GB, free: 2.484 MB / 0.5261 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 233 * Number of variables: 233 Notification: Performance of Generate backend data structure: time 0.002042/0.02005, allocations: 2.168 MB / 0.6134 GB, free: 160 kB / 0.5261 GB Notification: Performance of prepare preOptimizeDAE: time 3.484e-05/0.02009, allocations: 8.031 kB / 0.6134 GB, free: 152 kB / 0.5261 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.4077/0.4278, allocations: 468.2 kB / 0.6139 GB, free: 53.41 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0006917/0.4284, allocations: 0.5026 MB / 0.6144 GB, free: 53.26 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.289e-05/0.4285, allocations: 70.05 kB / 0.6145 GB, free: 53.26 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001432/0.4286, allocations: 115.3 kB / 0.6146 GB, free: 53.26 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001127/0.4298, allocations: 1.211 MB / 0.6157 GB, free: 52.64 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 3.52e-05/0.4298, allocations: 13.41 kB / 0.6158 GB, free: 52.64 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 5.452e-05/0.4299, allocations: 41.95 kB / 0.6158 GB, free: 52.64 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.223e-05/0.4299, allocations: 21.47 kB / 0.6158 GB, free: 52.64 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0006984/0.4306, allocations: 0.8465 MB / 0.6166 GB, free: 52.11 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002146/0.4327, allocations: 1.714 MB / 0.6183 GB, free: 51.5 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.00095/0.4337, allocations: 1.177 MB / 0.6195 GB, free: 50.71 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0003779/0.4341, allocations: 0.6851 MB / 0.6201 GB, free: 50.17 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 5.457e-05/0.4341, allocations: 23.19 kB / 0.6202 GB, free: 50.17 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001026/0.4351, allocations: 1.571 MB / 0.6217 GB, free: 49.06 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=157): time 3.146e-06/0.4351, allocations: 0 / 0.6217 GB, free: 49.06 MB / 0.5262 GB Notification: Performance of matching and sorting (n=165): time 0.003862/0.439, allocations: 4.925 MB / 0.6265 GB, free: 45.59 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001537/0.4392, allocations: 1.032 MB / 0.6275 GB, free: 44.38 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005271/0.4397, allocations: 0.7151 MB / 0.6282 GB, free: 44.21 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 6.395e-05/0.4397, allocations: 77.59 kB / 0.6283 GB, free: 44.15 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001432/0.4399, allocations: 332 kB / 0.6286 GB, free: 43.94 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002216/0.4401, allocations: 0.5333 MB / 0.6291 GB, free: 43.52 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002506/0.4404, allocations: 285.9 kB / 0.6294 GB, free: 43.4 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 3.726e-05/0.4404, allocations: 302.8 kB / 0.6297 GB, free: 43.11 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0004442/0.4408, allocations: 0.8307 MB / 0.6305 GB, free: 42.36 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004819/0.4413, allocations: 1.201 MB / 0.6317 GB, free: 41.14 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001434/0.4428, allocations: 2.675 MB / 0.6343 GB, free: 38.72 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.053e-06/0.4428, allocations: 2.938 kB / 0.6343 GB, free: 38.72 MB / 0.5262 GB Notification: Performance of matching and sorting (n=229) (initialization): time 0.001396/0.4442, allocations: 2.216 MB / 0.6364 GB, free: 37 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001187/0.4443, allocations: 0.5676 MB / 0.637 GB, free: 36.34 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.417e-05/0.4443, allocations: 8.438 kB / 0.637 GB, free: 36.34 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.597e-05/0.4443, allocations: 23.06 kB / 0.637 GB, free: 36.33 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0008007/0.4451, allocations: 407.3 kB / 0.6374 GB, free: 36.23 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.629e-05/0.4451, allocations: 24.7 kB / 0.6374 GB, free: 36.23 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000472/0.4456, allocations: 76.75 kB / 0.6375 GB, free: 36.2 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001753/0.4458, allocations: 240.1 kB / 0.6377 GB, free: 36.09 MB / 0.5262 GB Warning: Assuming fixed start value for the following 40 variables: patient4.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient4.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient4.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_CYP2C19_2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient2.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient2.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.dose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_citalopram_normal.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_citalopram_normal.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_normal.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_citalopram_CYP2C19_2.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.dose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient4.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient4.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient2.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_citalopram_normal.dose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 41 * Number of states: 0 () * Number of discrete variables: 92 ($PRE.patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.Cmin,$PRE.patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmax,$PRE.patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.Cmin,$PRE.patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmax,$PRE.patient2.central.Cmin,patient2.central.Cmin,$PRE.patient2.central.Cmax,patient2.central.Cmax,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$PRE.patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.Cmin,$PRE.patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmax,$PRE.patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.Cmin,$PRE.patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmax,$PRE.patient4.central.Cmin,patient4.central.Cmin,$PRE.patient4.central.Cmax,patient4.central.Cmax,$PRE.patient4.central.rising,$PRE.patient4.dose.pulse.count,$PRE.patient4.dose.pulse.T_start,$PRE.patient4.dose.absorptionLumen.rising,patient4.CYP2C19.status,patient4.SLC22A2.status,patient4.central.rising,patient4.dose.pulse.count,patient4.dose.pulse.T_start,patient4.dose.absorptionLumen.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.patient_citalopram_CYP2C19_2.central.rising,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.count,$PRE.patient_citalopram_CYP2C19_2.dose.pulse.T_start,$PRE.patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.patient2.central.rising,$PRE.patient2.dose.pulse.count,$PRE.patient2.dose.pulse.T_start,$PRE.patient2.dose.absorptionLumen.rising,patient2.CYP2C19.status,patient2.SLC22A2.status,patient2.central.rising,patient2.dose.pulse.count,patient2.dose.pulse.T_start,patient2.dose.absorptionLumen.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.patient_citalopram_normal.central.rising,$PRE.patient_citalopram_normal.dose.pulse.count,$PRE.patient_citalopram_normal.dose.pulse.T_start,$PRE.patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.central.rising,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.absorptionLumen.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (209): * Single equations (assignments): 189 * Array equations: 0 * Algorithm blocks: 20 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0006509/0.4464, allocations: 0.8902 MB / 0.6386 GB, free: 35.28 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0004248/0.4469, allocations: 392.1 kB / 0.639 GB, free: 35.13 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001209/0.447, allocations: 129.6 kB / 0.6391 GB, free: 35.02 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.108e-05/0.447, allocations: 16.67 kB / 0.6391 GB, free: 35.02 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.567e-05/0.447, allocations: 2.594 kB / 0.6391 GB, free: 35.02 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.818e-06/0.447, allocations: 9.406 kB / 0.6391 GB, free: 35.02 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002034/0.449, allocations: 2.894 MB / 0.642 GB, free: 32.84 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.428e-06/0.4491, allocations: 1.375 kB / 0.642 GB, free: 32.84 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0007128/0.4498, allocations: 293.4 kB / 0.6422 GB, free: 32.76 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 7.344e-06/0.4498, allocations: 9.594 kB / 0.6423 GB, free: 32.76 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 7.495e-05/0.4498, allocations: 63.61 kB / 0.6423 GB, free: 32.72 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 5.59e-06/0.4499, allocations: 5.688 kB / 0.6423 GB, free: 32.72 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.124e-06/0.4499, allocations: 2.578 kB / 0.6423 GB, free: 32.72 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.001838/0.4517, allocations: 3.36 MB / 0.6456 GB, free: 30.04 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0003366/0.452, allocations: 174.7 kB / 0.6458 GB, free: 29.93 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.000149/0.4522, allocations: 66.5 kB / 0.6458 GB, free: 29.9 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003645/0.4525, allocations: 65.23 kB / 0.6459 GB, free: 29.87 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001777/0.4527, allocations: 143.2 kB / 0.646 GB, free: 29.77 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001552/0.4529, allocations: 224.7 kB / 0.6462 GB, free: 29.67 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0002937/0.4532, allocations: 356.3 kB / 0.6466 GB, free: 29.5 MB / 0.5262 GB Notification: Performance of sort global known variables: time 1.7e-07/0.4532, allocations: 0.6562 kB / 0.6466 GB, free: 29.5 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.000908/0.4541, allocations: 380 kB / 0.647 GB, free: 29.46 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 5 * Number of states: 28 (patient4.dose.TotalCumulativeMass,patient4.dose.absorptionLumen.C,patient4.dose.absorptionLumen.AUC,patient4.dose.variableDose.TotalCumulativeMass,patient4.central.C,patient4.central.AUC,patient4.elim.MExc,patient_citalopram_CYP2C19_2.dose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.dose.absorptionLumen.C,patient_citalopram_CYP2C19_2.dose.absorptionLumen.AUC,patient_citalopram_CYP2C19_2.dose.variableDose.TotalCumulativeMass,patient_citalopram_CYP2C19_2.central.C,patient_citalopram_CYP2C19_2.central.AUC,patient_citalopram_CYP2C19_2.elim.MExc,patient2.dose.TotalCumulativeMass,patient2.dose.absorptionLumen.C,patient2.dose.absorptionLumen.AUC,patient2.dose.variableDose.TotalCumulativeMass,patient2.central.C,patient2.central.AUC,patient2.elim.MExc,patient_citalopram_normal.dose.TotalCumulativeMass,patient_citalopram_normal.dose.absorptionLumen.C,patient_citalopram_normal.dose.absorptionLumen.AUC,patient_citalopram_normal.dose.variableDose.TotalCumulativeMass,patient_citalopram_normal.central.C,patient_citalopram_normal.central.AUC,patient_citalopram_normal.elim.MExc) * Number of discrete variables: 60 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,patient4.dose.absorptionLumen.Cmax,patient4.dose.absorptionLumen.Cmin,patient4.dose.absorptionLumen.rising,patient4.dose.pulse.T_start,patient4.dose.pulse.count,patient4.central.Cmax,patient4.central.Cmin,patient4.central.rising,patient4.SLC22A2.status,patient4.CYP2C19.status,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.dose.pulse.T_start,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.central.Cmax,patient_citalopram_CYP2C19_2.central.Cmin,patient_citalopram_CYP2C19_2.central.rising,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,patient2.dose.absorptionLumen.Cmax,patient2.dose.absorptionLumen.Cmin,patient2.dose.absorptionLumen.rising,patient2.dose.pulse.T_start,patient2.dose.pulse.count,patient2.central.Cmax,patient2.central.Cmin,patient2.central.rising,patient2.SLC22A2.status,patient2.CYP2C19.status,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,patient_citalopram_normal.dose.absorptionLumen.Cmin,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.dose.pulse.T_start,patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.central.Cmax,patient_citalopram_normal.central.Cmin,patient_citalopram_normal.central.rising,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status) * Number of discrete states: 52 (patient_citalopram_normal.dose.pulse.count,patient_citalopram_normal.SLC22A2.status,patient_citalopram_normal.CYP2C19.status,patient_citalopram_normal.dose.absorptionLumen.Cmin,$whenCondition20,patient_citalopram_normal.dose.absorptionLumen.Cmax,$whenCondition19,patient_citalopram_normal.dose.absorptionLumen.rising,patient_citalopram_normal.central.Cmin,$whenCondition18,patient_citalopram_normal.central.Cmax,$whenCondition17,patient_citalopram_normal.central.rising,patient2.dose.pulse.count,patient2.SLC22A2.status,patient2.CYP2C19.status,patient2.dose.absorptionLumen.Cmin,$whenCondition15,patient2.dose.absorptionLumen.Cmax,$whenCondition14,patient2.dose.absorptionLumen.rising,patient2.central.Cmin,$whenCondition13,patient2.central.Cmax,$whenCondition12,patient2.central.rising,patient_citalopram_CYP2C19_2.dose.pulse.count,patient_citalopram_CYP2C19_2.SLC22A2.status,patient_citalopram_CYP2C19_2.CYP2C19.status,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmin,$whenCondition10,patient_citalopram_CYP2C19_2.dose.absorptionLumen.Cmax,$whenCondition9,patient_citalopram_CYP2C19_2.dose.absorptionLumen.rising,patient_citalopram_CYP2C19_2.central.Cmin,$whenCondition8,patient_citalopram_CYP2C19_2.central.Cmax,$whenCondition7,patient_citalopram_CYP2C19_2.central.rising,patient4.dose.pulse.count,patient4.SLC22A2.status,patient4.CYP2C19.status,patient4.dose.absorptionLumen.Cmin,$whenCondition5,patient4.dose.absorptionLumen.Cmax,$whenCondition4,patient4.dose.absorptionLumen.rising,patient4.central.Cmin,$whenCondition3,patient4.central.Cmax,$whenCondition2,patient4.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (133): * Single equations (assignments): 109 * Array equations: 0 * Algorithm blocks: 16 * Record equations: 0 * When equations: 8 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0003671/0.4544, allocations: 267.4 kB / 0.6472 GB, free: 29.3 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.001397/0.4558, allocations: 2.934 MB / 0.6501 GB, free: 26.57 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.213e-05/0.4559, allocations: 10.72 kB / 0.6501 GB, free: 26.57 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0006483/0.4565, allocations: 1.781 MB / 0.6518 GB, free: 24.85 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001033/0.4575, allocations: 407.5 kB / 0.6522 GB, free: 24.69 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003464/0.461, allocations: 3.253 MB / 0.6554 GB, free: 22.49 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002087/0.4612, allocations: 306.7 kB / 0.6557 GB, free: 22.31 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0004448/0.4617, allocations: 113.8 kB / 0.6558 GB, free: 22.27 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0007398/0.4624, allocations: 463.7 kB / 0.6562 GB, free: 22.13 MB / 0.5262 GB Notification: Performance of SimCode: time 1.242e-06/0.4624, allocations: 1.625 kB / 0.6562 GB, free: 22.13 MB / 0.5262 GB Notification: Performance of Templates: time 0.02441/0.4868, allocations: 25.55 MB / 0.6812 GB, free: 100 kB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_Lithium_Experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.828155935741961]