Environment - simulationEnvironment:
startTime=0
stopTime=864000
tolerance=1e-09
numberOfIntervals=86400
stepSize=10
Regular simulation: ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS
LOG_STDOUT        | warning | Numerical Jacobians without coloring are currently not supported by GBODE. Colored numerical Jacobian will be used.
LOG_SUCCESS       | info    | The initialization finished successfully without homotopy method.
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialCompartment.mo:18:3-18:49:writable]
|                 | |       | The following assertion has been violated at time 658.532387
|                 | |       | ((pK_lower.periodicDose.absorptionLumen.M >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_lower.periodicDose.absorptionLumen.M, has value: -2.38095e-11"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialDrugSource.mo:6:9-6:96:writable]
|                 | |       | The following assertion has been violated at time 658.532387
|                 | |       | ((pK_lower.periodicDose.variableDose.TotalCumulativeMass >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_lower.periodicDose.variableDose.TotalCumulativeMass, has value: -7.92363e-12"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialCompartment.mo:18:3-18:49:writable]
|                 | |       | The following assertion has been violated at time 658.532387
|                 | |       | ((pK_1C_Lithium_upper.periodicDose.absorptionLumen.M >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_1C_Lithium_upper.periodicDose.absorptionLumen.M, has value: -1.42857e-10"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialDrugSource.mo:6:9-6:96:writable]
|                 | |       | The following assertion has been violated at time 658.532387
|                 | |       | ((pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass, has value: -4.75418e-11"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialCompartment.mo:18:3-18:49:writable]
|                 | |       | The following assertion has been violated at time 658.532387
|                 | |       | ((pK_1C_Lithium.periodicDose.absorptionLumen.M >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_1C_Lithium.periodicDose.absorptionLumen.M, has value: -9.52381e-11"
LOG_ASSERT        | info    | [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Interfaces/PartialDrugSource.mo:6:9-6:96:writable]
|                 | |       | The following assertion has been violated at time 658.532387
|                 | |       | ((pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass >= -1e-12)) --> "Variable violating min constraint: -1e-12 <= pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass, has value: -3.16945e-11"
LOG_STATS         | info    | gbode (single-rate integration): radauIIA3
LOG_STATS         | info    | ### STATISTICS ###
|                 | |       | | timer
|                 | |       | | |            0s          reading init.xml
|                 | |       | | |            0s          reading info.xml
|                 | |       | | |   6.5844e-05s [  0.0%] pre-initialization
|                 | |       | | |   6.8279e-05s [  0.0%] initialization
|                 | |       | | |            0s [  0.0%] steps
|                 | |       | | |            0s [  0.0%] solver (excl. callbacks)
|                 | |       | | |    1.994e-06s [  0.0%] creating output-file
|                 | |       | | |  0.000431977s [  0.2%] event-handling
|                 | |       | | |            0s [  0.0%] overhead
|                 | |       | | |     0.213386s [ 99.7%] simulation
|                 | |       | | |     0.213954s [100.0%] total
|                 | |       | | events
|                 | |       | | |   112 state events
|                 | |       | | |    40 time events
|                 | |       | | solver: gbode
|                 | |       | | |  1244 steps taken
|                 | |       | | |  5182 calls of functionODE
|                 | |       | | |   143 evaluations of jacobian
|                 | |       | | |    86 error test failures
|                 | |       | | |     0 convergence test failures
|                 | |       | | | 0s time of jacobian evaluation
LOG_SUCCESS       | info    | The simulation finished successfully.