Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001328/0.001328, allocations: 80.94 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001001/0.001001, allocations: 173 kB / 23.36 MB, free: 1.133 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9203/0.9203, allocations: 177.1 MB / 203.8 MB, free: 5.461 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.576/1.576, allocations: 273.5 MB / 0.5212 GB, free: 14.69 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") translateModel(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.493e-06/1.493e-06, allocations: 0 / 0.5954 GB, free: 2.75 MB / 0.5105 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.529e-05/1.678e-05, allocations: 3.734 kB / 0.5954 GB, free: 2.746 MB / 0.5105 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI): time 0.007059/0.007076, allocations: 6.828 MB / 0.6021 GB, free: 11.98 MB / 0.5261 GB Notification: Performance of NFInst.instExpressions: time 0.002358/0.009434, allocations: 1.335 MB / 0.6034 GB, free: 10.66 MB / 0.5261 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003276/0.009761, allocations: 11.94 kB / 0.6034 GB, free: 10.64 MB / 0.5261 GB Notification: Performance of NFTyping.typeComponents: time 0.0002505/0.01001, allocations: 108.2 kB / 0.6035 GB, free: 10.54 MB / 0.5261 GB Notification: Performance of NFTyping.typeBindings: time 0.0006046/0.01062, allocations: 344.7 kB / 0.6038 GB, free: 10.21 MB / 0.5261 GB Notification: Performance of NFTyping.typeClassSections: time 0.0005512/0.01117, allocations: 287.5 kB / 0.6041 GB, free: 9.926 MB / 0.5261 GB Notification: Performance of NFFlatten.flatten: time 0.001114/0.01228, allocations: 1.217 MB / 0.6053 GB, free: 8.703 MB / 0.5261 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0003162/0.0126, allocations: 197.8 kB / 0.6055 GB, free: 8.492 MB / 0.5261 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0006276/0.01323, allocations: 0.616 MB / 0.6061 GB, free: 7.875 MB / 0.5261 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004467/0.01367, allocations: 363 kB / 0.6064 GB, free: 7.52 MB / 0.5261 GB Notification: Performance of NFPackage.collectConstants: time 0.0001054/0.01378, allocations: 108 kB / 0.6065 GB, free: 7.414 MB / 0.5261 GB Notification: Performance of NFFlatten.collectFunctions: time 0.000101/0.01388, allocations: 112 kB / 0.6066 GB, free: 7.305 MB / 0.5261 GB Notification: Performance of NFScalarize.scalarize: time 0.0001102/0.01399, allocations: 203.2 kB / 0.6068 GB, free: 7.105 MB / 0.5261 GB Notification: Performance of NFVerifyModel.verify: time 0.0002894/0.01428, allocations: 359.2 kB / 0.6072 GB, free: 6.754 MB / 0.5261 GB Notification: Performance of NFConvertDAE.convert: time 0.0006249/0.0149, allocations: 0.7165 MB / 0.6079 GB, free: 6.035 MB / 0.5261 GB Notification: Performance of FrontEnd - DAE generated: time 5.039e-06/0.01491, allocations: 0 / 0.6079 GB, free: 6.035 MB / 0.5261 GB Notification: Performance of FrontEnd: time 2.214e-06/0.01491, allocations: 0 / 0.6079 GB, free: 6.035 MB / 0.5261 GB Notification: Performance of Transformations before backend: time 1.11e-05/0.01492, allocations: 0 / 0.6079 GB, free: 6.035 MB / 0.5261 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 144 * Number of variables: 144 Notification: Performance of Generate backend data structure: time 0.001268/0.01619, allocations: 1.292 MB / 0.6091 GB, free: 4.652 MB / 0.5261 GB Notification: Performance of prepare preOptimizeDAE: time 2.943e-05/0.01622, allocations: 8.031 kB / 0.6091 GB, free: 4.645 MB / 0.5261 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001243/0.01634, allocations: 107.9 kB / 0.6093 GB, free: 4.539 MB / 0.5261 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.000376/0.01672, allocations: 324.9 kB / 0.6096 GB, free: 4.191 MB / 0.5261 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.847e-05/0.01675, allocations: 41.31 kB / 0.6096 GB, free: 4.152 MB / 0.5261 GB Notification: Performance of preOpt expandDerOperator (simulation): time 7.682e-05/0.01682, allocations: 75.89 kB / 0.6097 GB, free: 4.078 MB / 0.5261 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0006094/0.01743, allocations: 0.6449 MB / 0.6103 GB, free: 3.371 MB / 0.5261 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.688e-05/0.01746, allocations: 15.92 kB / 0.6103 GB, free: 3.355 MB / 0.5261 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.231e-05/0.01749, allocations: 24 kB / 0.6103 GB, free: 3.332 MB / 0.5261 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.243e-05/0.01751, allocations: 19.31 kB / 0.6104 GB, free: 3.316 MB / 0.5261 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.000489/0.01799, allocations: 421.6 kB / 0.6108 GB, free: 2.875 MB / 0.5261 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001307/0.0193, allocations: 1.292 MB / 0.612 GB, free: 1.551 MB / 0.5261 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0006624/0.01996, allocations: 0.4971 MB / 0.6125 GB, free: 0.9922 MB / 0.5261 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0001996/0.02016, allocations: 301.4 kB / 0.6128 GB, free: 0.6523 MB / 0.5261 GB Notification: Performance of preOpt evalFunc (simulation): time 3.451e-05/0.0202, allocations: 19.98 kB / 0.6128 GB, free: 0.6328 MB / 0.5261 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.3387/0.3589, allocations: 0.9209 MB / 0.6137 GB, free: 52.01 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=99): time 3.908e-06/0.3589, allocations: 0 / 0.6137 GB, free: 52.01 MB / 0.5262 GB Notification: Performance of matching and sorting (n=105): time 0.002728/0.3617, allocations: 2.35 MB / 0.616 GB, free: 50.66 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001074/0.3618, allocations: 0.595 MB / 0.6166 GB, free: 49.97 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0004155/0.3622, allocations: 462.6 kB / 0.617 GB, free: 49.86 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 5.39e-05/0.3623, allocations: 59.48 kB / 0.6171 GB, free: 49.82 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001169/0.3624, allocations: 234.6 kB / 0.6173 GB, free: 49.73 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001838/0.3626, allocations: 358.2 kB / 0.6177 GB, free: 49.57 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002302/0.3628, allocations: 192 kB / 0.6178 GB, free: 49.55 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 9.542e-05/0.3629, allocations: 404.8 kB / 0.6182 GB, free: 49.24 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.000282/0.3632, allocations: 414.6 kB / 0.6186 GB, free: 48.94 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003831/0.3635, allocations: 0.7167 MB / 0.6193 GB, free: 48.25 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0009214/0.3645, allocations: 1.396 MB / 0.6207 GB, free: 47.2 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 6.422e-06/0.3645, allocations: 2.625 kB / 0.6207 GB, free: 47.2 MB / 0.5262 GB Notification: Performance of matching and sorting (n=159) (initialization): time 0.0009597/0.3654, allocations: 1.064 MB / 0.6217 GB, free: 46.57 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 8.011e-05/0.3655, allocations: 267.1 kB / 0.622 GB, free: 46.29 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.549e-05/0.3655, allocations: 8.438 kB / 0.622 GB, free: 46.29 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.03e-05/0.3656, allocations: 16.08 kB / 0.622 GB, free: 46.29 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0008335/0.3664, allocations: 314.3 kB / 0.6223 GB, free: 46.27 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.936e-05/0.3664, allocations: 19.42 kB / 0.6223 GB, free: 46.27 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0004028/0.3668, allocations: 60.94 kB / 0.6224 GB, free: 46.27 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 5.6e-05/0.3669, allocations: 42.33 kB / 0.6224 GB, free: 46.27 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 36 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.Cmin,$PRE.pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmax,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.Cmin,$PRE.pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmax,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.central.Cmin,pK_lower.central.Cmin,$PRE.pK_lower.central.Cmax,pK_lower.central.Cmax,$PRE.pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.pK_lower.periodicDose.pulse.count,$PRE.pK_lower.periodicDose.pulse.T_start,$PRE.pK_lower.periodicDose.absorptionLumen.rising,$PRE.pK_lower.central.rising,pK_lower.periodicDose.pulse.count,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.pK_1C_Lithium.periodicDose.pulse.count,$PRE.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (150): * Single equations (assignments): 141 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0004151/0.3673, allocations: 0.5049 MB / 0.6229 GB, free: 45.92 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001232/0.3674, allocations: 99.53 kB / 0.623 GB, free: 45.92 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.357e-05/0.3675, allocations: 86.56 kB / 0.6231 GB, free: 45.91 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.148e-06/0.3675, allocations: 10.28 kB / 0.6231 GB, free: 45.91 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.175e-05/0.3675, allocations: 2.25 kB / 0.6231 GB, free: 45.91 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.458e-06/0.3675, allocations: 3.609 kB / 0.6231 GB, free: 45.91 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001387/0.3689, allocations: 1.46 MB / 0.6245 GB, free: 45.17 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.078e-06/0.3689, allocations: 2.531 kB / 0.6245 GB, free: 45.17 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0006493/0.3696, allocations: 211 kB / 0.6247 GB, free: 45.16 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 6.562e-06/0.3696, allocations: 3.75 kB / 0.6247 GB, free: 45.16 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 5.251e-05/0.3696, allocations: 32.61 kB / 0.6248 GB, free: 45.16 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.949e-06/0.3696, allocations: 5.094 kB / 0.6248 GB, free: 45.16 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.613e-06/0.3696, allocations: 1.969 kB / 0.6248 GB, free: 45.16 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0009882/0.3706, allocations: 1.461 MB / 0.6262 GB, free: 44.28 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0002182/0.3708, allocations: 89.75 kB / 0.6263 GB, free: 44.24 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001146/0.371, allocations: 44.38 kB / 0.6263 GB, free: 44.24 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.000345/0.3713, allocations: 44.72 kB / 0.6264 GB, free: 44.24 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001601/0.3715, allocations: 94.66 kB / 0.6265 GB, free: 44.24 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.226e-05/0.3715, allocations: 28.39 kB / 0.6265 GB, free: 44.24 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0001981/0.3717, allocations: 197.8 kB / 0.6267 GB, free: 44.22 MB / 0.5262 GB Notification: Performance of sort global known variables: time 7e-08/0.3717, allocations: 2.094 kB / 0.6267 GB, free: 44.22 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.000697/0.3724, allocations: 252.7 kB / 0.6269 GB, free: 44.22 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 3 * Number of states: 21 (pK_lower.central.C,pK_lower.central.AUC,pK_lower.elim.MExc,pK_lower.periodicDose.TotalCumulativeMass,pK_lower.periodicDose.absorptionLumen.C,pK_lower.periodicDose.absorptionLumen.AUC,pK_lower.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium_upper.central.C,pK_1C_Lithium_upper.central.AUC,pK_1C_Lithium_upper.elim.MExc,pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,pK_1C_Lithium.central.C,pK_1C_Lithium.central.AUC,pK_1C_Lithium.elim.MExc,pK_1C_Lithium.periodicDose.TotalCumulativeMass,pK_1C_Lithium.periodicDose.absorptionLumen.C,pK_1C_Lithium.periodicDose.absorptionLumen.AUC,pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,pK_lower.central.Cmax,pK_lower.central.Cmin,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmax,pK_lower.periodicDose.absorptionLumen.Cmin,pK_lower.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.T_start,pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,pK_1C_Lithium_upper.central.Cmin,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.T_start,pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,pK_1C_Lithium.central.Cmax,pK_1C_Lithium.central.Cmin,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium.periodicDose.pulse.T_start,pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 33 (pK_1C_Lithium.periodicDose.pulse.count,pK_1C_Lithium.central.Cmin,$whenCondition15,pK_1C_Lithium.central.Cmax,$whenCondition14,pK_1C_Lithium.central.rising,pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,pK_1C_Lithium.periodicDose.absorptionLumen.rising,pK_1C_Lithium_upper.periodicDose.pulse.count,pK_1C_Lithium_upper.central.Cmin,$whenCondition10,pK_1C_Lithium_upper.central.Cmax,$whenCondition9,pK_1C_Lithium_upper.central.rising,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,pK_lower.periodicDose.pulse.count,pK_lower.central.Cmin,$whenCondition5,pK_lower.central.Cmax,$whenCondition4,pK_lower.central.rising,pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001779/0.3726, allocations: 169.3 kB / 0.6271 GB, free: 44.12 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0009219/0.3735, allocations: 1.423 MB / 0.6285 GB, free: 43.03 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.161e-05/0.3735, allocations: 5.625 kB / 0.6285 GB, free: 43.03 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0004303/0.3739, allocations: 0.7671 MB / 0.6292 GB, free: 42.44 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.00104/0.375, allocations: 284.1 kB / 0.6295 GB, free: 42.43 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003146/0.3781, allocations: 1.858 MB / 0.6313 GB, free: 41.46 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001381/0.3783, allocations: 169.4 kB / 0.6315 GB, free: 41.35 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0004294/0.3787, allocations: 95.91 kB / 0.6316 GB, free: 41.32 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006049/0.3793, allocations: 338 kB / 0.6319 GB, free: 41.22 MB / 0.5262 GB Notification: Performance of SimCode: time 1.182e-06/0.3793, allocations: 1.406 kB / 0.6319 GB, free: 41.22 MB / 0.5262 GB Notification: Performance of Templates: time 0.01834/0.3976, allocations: 15.56 MB / 0.6471 GB, free: 34.45 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PK_1C_Lithium_CI.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.058882240206003]