Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001008/0.001008, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009993/0.0009993, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9531/0.9531, allocations: 177.1 MB / 203.8 MB, free: 5.48 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.584/1.584, allocations: 273.5 MB / 0.5213 GB, free: 14.6 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.364e-06/2.364e-06, allocations: 0 / 0.5954 GB, free: 2.652 MB / 0.5105 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.216e-05/2.453e-05, allocations: 2.312 kB / 0.5954 GB, free: 2.648 MB / 0.5105 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.009218/0.009242, allocations: 10.95 MB / 0.6061 GB, free: 7.762 MB / 0.5261 GB Notification: Performance of NFInst.instExpressions: time 0.004178/0.01342, allocations: 2.339 MB / 0.6084 GB, free: 5.422 MB / 0.5261 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0009349/0.01436, allocations: 19.94 kB / 0.6084 GB, free: 5.402 MB / 0.5261 GB Notification: Performance of NFTyping.typeComponents: time 0.0004502/0.01481, allocations: 217.7 kB / 0.6086 GB, free: 5.188 MB / 0.5261 GB Notification: Performance of NFTyping.typeBindings: time 0.001303/0.01611, allocations: 0.6974 MB / 0.6093 GB, free: 4.484 MB / 0.5261 GB Notification: Performance of NFTyping.typeClassSections: time 0.001/0.01711, allocations: 0.6281 MB / 0.6099 GB, free: 3.855 MB / 0.5261 GB Notification: Performance of NFFlatten.flatten: time 0.002191/0.0193, allocations: 2.669 MB / 0.6125 GB, free: 1.176 MB / 0.5261 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0005029/0.0198, allocations: 393.7 kB / 0.6129 GB, free: 0.7461 MB / 0.5261 GB Notification: Performance of NFEvalConstants.evaluate: time 0.3901/0.4099, allocations: 1.353 MB / 0.6142 GB, free: 43.48 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.001191/0.4111, allocations: 0.7426 MB / 0.615 GB, free: 43.48 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0003368/0.4115, allocations: 278.6 kB / 0.6152 GB, free: 43.48 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003577/0.4118, allocations: 281.7 kB / 0.6155 GB, free: 43.48 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0002436/0.4121, allocations: 447.3 kB / 0.6159 GB, free: 43.48 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0006528/0.4127, allocations: 0.7638 MB / 0.6167 GB, free: 43.48 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001423/0.4141, allocations: 1.584 MB / 0.6182 GB, free: 43.36 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 5.931e-06/0.4141, allocations: 2.281 kB / 0.6182 GB, free: 43.36 MB / 0.5262 GB Notification: Performance of FrontEnd: time 1.934e-06/0.4142, allocations: 0 / 0.6182 GB, free: 43.36 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 2.864e-05/0.4142, allocations: 0.75 kB / 0.6182 GB, free: 43.36 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 * Number of variables: 288 Notification: Performance of Generate backend data structure: time 0.002836/0.417, allocations: 2.417 MB / 0.6206 GB, free: 41.92 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.012e-05/0.4171, allocations: 11.5 kB / 0.6206 GB, free: 41.92 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003121/0.4174, allocations: 214.3 kB / 0.6208 GB, free: 41.92 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0007536/0.4181, allocations: 0.5467 MB / 0.6213 GB, free: 41.59 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 5.903e-05/0.4182, allocations: 89.52 kB / 0.6214 GB, free: 41.59 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001683/0.4183, allocations: 142.6 kB / 0.6216 GB, free: 41.58 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001134/0.4195, allocations: 1.26 MB / 0.6228 GB, free: 41.01 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 4.723e-05/0.4195, allocations: 20.92 kB / 0.6228 GB, free: 41 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.311e-05/0.4196, allocations: 49.12 kB / 0.6228 GB, free: 41 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.946e-05/0.4196, allocations: 31.78 kB / 0.6229 GB, free: 41 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0006723/0.4203, allocations: 0.8148 MB / 0.6237 GB, free: 40.62 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002536/0.4228, allocations: 2.84 MB / 0.6264 GB, free: 39.38 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0008901/0.4237, allocations: 0.9968 MB / 0.6274 GB, free: 38.86 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0003551/0.4241, allocations: 0.5968 MB / 0.628 GB, free: 38.44 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 5.554e-05/0.4241, allocations: 30.94 kB / 0.628 GB, free: 38.44 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001122/0.4252, allocations: 1.861 MB / 0.6299 GB, free: 37.17 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=198): time 3.526e-06/0.4252, allocations: 2.312 kB / 0.6299 GB, free: 37.17 MB / 0.5262 GB Notification: Performance of matching and sorting (n=210): time 0.003769/0.429, allocations: 4.718 MB / 0.6345 GB, free: 33.84 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.000159/0.4292, allocations: 1.175 MB / 0.6356 GB, free: 32.45 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005953/0.4298, allocations: 0.7924 MB / 0.6364 GB, free: 32.14 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 8.796e-05/0.4299, allocations: 101.8 kB / 0.6365 GB, free: 32.06 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001754/0.43, allocations: 392.4 kB / 0.6369 GB, free: 31.79 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0002846/0.4303, allocations: 0.6978 MB / 0.6375 GB, free: 31.23 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003305/0.4306, allocations: 369.9 kB / 0.6379 GB, free: 31.09 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 2.644e-05/0.4307, allocations: 306.5 kB / 0.6382 GB, free: 30.79 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0004437/0.4311, allocations: 0.8079 MB / 0.639 GB, free: 30.11 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0005911/0.4317, allocations: 1.432 MB / 0.6404 GB, free: 28.62 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.001379/0.4331, allocations: 2.784 MB / 0.6431 GB, free: 26.21 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.541e-05/0.4331, allocations: 6.094 kB / 0.6431 GB, free: 26.21 MB / 0.5262 GB Notification: Performance of matching and sorting (n=318) (initialization): time 0.001502/0.4346, allocations: 2.11 MB / 0.6452 GB, free: 24.74 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 0.0001055/0.4347, allocations: 0.5114 MB / 0.6457 GB, free: 24.14 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.876e-05/0.4347, allocations: 14.81 kB / 0.6457 GB, free: 24.14 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.475e-05/0.4348, allocations: 30.69 kB / 0.6457 GB, free: 24.14 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001199/0.436, allocations: 0.6165 MB / 0.6463 GB, free: 24.02 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 2.399e-05/0.436, allocations: 38.58 kB / 0.6463 GB, free: 24.02 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0008306/0.4368, allocations: 118.6 kB / 0.6464 GB, free: 23.96 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001/0.4369, allocations: 85.3 kB / 0.6465 GB, free: 23.94 MB / 0.5262 GB Warning: Assuming fixed start value for the following 60 variables: low_clearance.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_lower.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real normal.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real normal.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real low_clearance.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean low_clearance.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_lower.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium_upper.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean normal.pK_1C_Lithium.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 72 * Number of states: 0 () * Number of discrete variables: 126 ($PRE.normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.Cmin,$PRE.normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmax,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.Cmin,$PRE.normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmax,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.normal.pK_lower.central.Cmin,normal.pK_lower.central.Cmin,$PRE.normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmax,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.Cmin,$PRE.low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmax,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmax,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.Cmin,$PRE.low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmax,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$PRE.low_clearance.pK_lower.periodicDose.pulse.count,$PRE.low_clearance.pK_lower.periodicDose.pulse.T_start,$PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$PRE.low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11,$PRE.normal.pK_lower.periodicDose.pulse.count,$PRE.normal.pK_lower.periodicDose.pulse.T_start,$PRE.normal.pK_lower.periodicDose.absorptionLumen.rising,$PRE.normal.pK_lower.central.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.central.rising,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition21,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.count,$PRE.normal.pK_1C_Lithium.periodicDose.pulse.T_start,$PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,$PRE.normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.central.rising,$whenCondition30,$whenCondition29,$whenCondition28,$whenCondition27,$whenCondition26) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (300): * Single equations (assignments): 282 * Array equations: 0 * Algorithm blocks: 18 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0008529/0.4378, allocations: 0.9594 MB / 0.6475 GB, free: 23.21 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002264/0.438, allocations: 195.2 kB / 0.6476 GB, free: 23.14 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0001503/0.4381, allocations: 164.6 kB / 0.6478 GB, free: 23.02 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.17e-05/0.4382, allocations: 18.5 kB / 0.6478 GB, free: 23.02 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 1.927e-05/0.4382, allocations: 1.375 kB / 0.6478 GB, free: 23.02 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.124e-05/0.4382, allocations: 12.28 kB / 0.6478 GB, free: 23.01 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002597/0.4408, allocations: 3.037 MB / 0.6508 GB, free: 20.97 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.229e-06/0.4408, allocations: 1.344 kB / 0.6508 GB, free: 20.97 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.001049/0.4418, allocations: 422.8 kB / 0.6512 GB, free: 20.87 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 8.876e-06/0.4419, allocations: 8.219 kB / 0.6512 GB, free: 20.87 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.907e-05/0.442, allocations: 74.52 kB / 0.6513 GB, free: 20.82 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.258e-06/0.442, allocations: 10.06 kB / 0.6513 GB, free: 20.82 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.424e-06/0.442, allocations: 2.594 kB / 0.6513 GB, free: 20.82 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.00168/0.4436, allocations: 2.895 MB / 0.6541 GB, free: 18.69 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0005332/0.4442, allocations: 185.1 kB / 0.6543 GB, free: 18.58 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0002296/0.4444, allocations: 105.8 kB / 0.6544 GB, free: 18.52 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005356/0.4449, allocations: 86.75 kB / 0.6545 GB, free: 18.49 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002656/0.4452, allocations: 186 kB / 0.6547 GB, free: 18.36 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 7.001e-05/0.4453, allocations: 59.17 kB / 0.6547 GB, free: 18.33 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0003692/0.4456, allocations: 397.9 kB / 0.6551 GB, free: 18.2 MB / 0.5262 GB Notification: Performance of sort global known variables: time 3.1e-07/0.4456, allocations: 0 / 0.6551 GB, free: 18.2 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.00128/0.4469, allocations: 490.7 kB / 0.6556 GB, free: 18.14 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 6 * Number of states: 42 (low_clearance.pK_lower.central.C,low_clearance.pK_lower.central.AUC,low_clearance.pK_lower.elim.MExc,low_clearance.pK_lower.periodicDose.TotalCumulativeMass,low_clearance.pK_lower.periodicDose.absorptionLumen.C,low_clearance.pK_lower.periodicDose.absorptionLumen.AUC,low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.central.C,low_clearance.pK_1C_Lithium_upper.central.AUC,low_clearance.pK_1C_Lithium_upper.elim.MExc,low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.central.C,low_clearance.pK_1C_Lithium.central.AUC,low_clearance.pK_1C_Lithium.elim.MExc,low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.C,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass,normal.pK_lower.central.C,normal.pK_lower.central.AUC,normal.pK_lower.elim.MExc,normal.pK_lower.periodicDose.TotalCumulativeMass,normal.pK_lower.periodicDose.absorptionLumen.C,normal.pK_lower.periodicDose.absorptionLumen.AUC,normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.central.C,normal.pK_1C_Lithium_upper.central.AUC,normal.pK_1C_Lithium_upper.elim.MExc,normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass,normal.pK_1C_Lithium.central.C,normal.pK_1C_Lithium.central.AUC,normal.pK_1C_Lithium.elim.MExc,normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass,normal.pK_1C_Lithium.periodicDose.absorptionLumen.C,normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC,normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass) * Number of discrete variables: 78 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,low_clearance.pK_lower.central.Cmax,low_clearance.pK_lower.central.Cmin,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,low_clearance.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.T_start,low_clearance.pK_lower.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,low_clearance.pK_1C_Lithium_upper.central.Cmin,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,low_clearance.pK_1C_Lithium.central.Cmin,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.T_start,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,$whenCondition16,$whenCondition17,$whenCondition18,$whenCondition19,$whenCondition20,normal.pK_lower.central.Cmax,normal.pK_lower.central.Cmin,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmax,normal.pK_lower.periodicDose.absorptionLumen.Cmin,normal.pK_lower.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.T_start,normal.pK_lower.periodicDose.pulse.count,$whenCondition21,$whenCondition22,$whenCondition23,$whenCondition24,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,normal.pK_1C_Lithium_upper.central.Cmin,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.T_start,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,$whenCondition26,$whenCondition27,$whenCondition28,$whenCondition29,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,normal.pK_1C_Lithium.central.Cmin,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium.periodicDose.pulse.T_start,normal.pK_1C_Lithium.periodicDose.pulse.count) * Number of discrete states: 66 (normal.pK_1C_Lithium.periodicDose.pulse.count,normal.pK_1C_Lithium.central.Cmin,$whenCondition30,normal.pK_1C_Lithium.central.Cmax,$whenCondition29,normal.pK_1C_Lithium.central.rising,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition28,normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition27,normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising,normal.pK_1C_Lithium_upper.periodicDose.pulse.count,normal.pK_1C_Lithium_upper.central.Cmin,$whenCondition25,normal.pK_1C_Lithium_upper.central.Cmax,$whenCondition24,normal.pK_1C_Lithium_upper.central.rising,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition23,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition22,normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,normal.pK_lower.periodicDose.pulse.count,normal.pK_lower.central.Cmin,$whenCondition20,normal.pK_lower.central.Cmax,$whenCondition19,normal.pK_lower.central.rising,normal.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition18,normal.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition17,normal.pK_lower.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium.periodicDose.pulse.count,low_clearance.pK_1C_Lithium.central.Cmin,$whenCondition15,low_clearance.pK_1C_Lithium.central.Cmax,$whenCondition14,low_clearance.pK_1C_Lithium.central.rising,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin,$whenCondition13,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax,$whenCondition12,low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.pulse.count,low_clearance.pK_1C_Lithium_upper.central.Cmin,$whenCondition10,low_clearance.pK_1C_Lithium_upper.central.Cmax,$whenCondition9,low_clearance.pK_1C_Lithium_upper.central.rising,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin,$whenCondition8,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax,$whenCondition7,low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising,low_clearance.pK_lower.periodicDose.pulse.count,low_clearance.pK_lower.central.Cmin,$whenCondition5,low_clearance.pK_lower.central.Cmax,$whenCondition4,low_clearance.pK_lower.central.rising,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin,$whenCondition3,low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax,$whenCondition2,low_clearance.pK_lower.periodicDose.absorptionLumen.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (174): * Single equations (assignments): 150 * Array equations: 0 * Algorithm blocks: 12 * Record equations: 0 * When equations: 12 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.000258/0.4472, allocations: 301.4 kB / 0.6559 GB, free: 17.97 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.001727/0.4489, allocations: 2.845 MB / 0.6586 GB, free: 15.61 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 1.74e-05/0.4489, allocations: 13.12 kB / 0.6586 GB, free: 15.61 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0006516/0.4496, allocations: 1.554 MB / 0.6602 GB, free: 14.27 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.001532/0.4511, allocations: 0.5673 MB / 0.6607 GB, free: 14.05 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0043/0.4554, allocations: 3.566 MB / 0.6642 GB, free: 11.66 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002059/0.4556, allocations: 296.5 kB / 0.6645 GB, free: 11.34 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0007835/0.4564, allocations: 187.2 kB / 0.6647 GB, free: 11.16 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0009914/0.4574, allocations: 0.6152 MB / 0.6653 GB, free: 10.55 MB / 0.5262 GB Notification: Performance of SimCode: time 1.402e-06/0.4574, allocations: 0 / 0.6653 GB, free: 10.55 MB / 0.5262 GB Notification: Performance of Templates: time 0.0355/0.4929, allocations: 33.44 MB / 0.6979 GB, free: 11.21 MB / 0.5574 GB " [Timeout remaining time 659] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.24966287612915]