Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001204/0.001204, allocations: 80.94 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001431/0.001431, allocations: 177 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9832/0.9832, allocations: 177.1 MB / 203.8 MB, free: 5.461 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.617/1.617, allocations: 273.5 MB / 0.5212 GB, free: 14.69 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine")
translateModel(Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.433e-06/1.433e-06, allocations: 0 / 0.5955 GB, free: 2.715 MB / 0.5105 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.182e-05/1.326e-05, allocations: 2.312 kB / 0.5955 GB, free: 2.711 MB / 0.5105 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine): time 0.005617/0.00563, allocations: 6.85 MB / 0.6021 GB, free: 11.93 MB / 0.5261 GB
Notification: Performance of NFInst.instExpressions: time 0.002552/0.008182, allocations: 1.342 MB / 0.6035 GB, free: 10.59 MB / 0.5261 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002936/0.008475, allocations: 8 kB / 0.6035 GB, free: 10.59 MB / 0.5261 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001676/0.008643, allocations: 116.1 kB / 0.6036 GB, free: 10.47 MB / 0.5261 GB
Notification: Performance of NFTyping.typeBindings: time 0.0004897/0.009132, allocations: 346.9 kB / 0.6039 GB, free: 10.14 MB / 0.5261 GB
Notification: Performance of NFTyping.typeClassSections: time 0.000431/0.009563, allocations: 283.6 kB / 0.6042 GB, free: 9.859 MB / 0.5261 GB
Notification: Performance of NFFlatten.flatten: time 0.0009162/0.01048, allocations: 1.229 MB / 0.6054 GB, free: 8.625 MB / 0.5261 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002331/0.01071, allocations: 189.8 kB / 0.6056 GB, free: 8.422 MB / 0.5261 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0005768/0.01129, allocations: 0.6238 MB / 0.6062 GB, free: 7.797 MB / 0.5261 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003876/0.01168, allocations: 358.9 kB / 0.6065 GB, free: 7.445 MB / 0.5261 GB
Notification: Performance of NFPackage.collectConstants: time 9.106e-05/0.01177, allocations: 112 kB / 0.6066 GB, free: 7.336 MB / 0.5261 GB
Notification: Performance of NFFlatten.collectFunctions: time 9.606e-05/0.01186, allocations: 108 kB / 0.6067 GB, free: 7.23 MB / 0.5261 GB
Notification: Performance of NFScalarize.scalarize: time 9.721e-05/0.01196, allocations: 199.2 kB / 0.6069 GB, free: 7.035 MB / 0.5261 GB
Notification: Performance of NFVerifyModel.verify: time 0.0002455/0.01221, allocations: 367.2 kB / 0.6073 GB, free: 6.676 MB / 0.5261 GB
Notification: Performance of NFConvertDAE.convert: time 0.0005049/0.01271, allocations: 0.7204 MB / 0.608 GB, free: 5.953 MB / 0.5261 GB
Notification: Performance of FrontEnd - DAE generated: time 1.352e-06/0.01271, allocations: 4 kB / 0.608 GB, free: 5.949 MB / 0.5261 GB
Notification: Performance of FrontEnd: time 6.21e-07/0.01271, allocations: 0 / 0.608 GB, free: 5.949 MB / 0.5261 GB
Notification: Performance of Transformations before backend: time 7.955e-06/0.01272, allocations: 0 / 0.608 GB, free: 5.949 MB / 0.5261 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 146
 * Number of variables: 146
Notification: Performance of Generate backend data structure: time 0.001091/0.01381, allocations: 1.289 MB / 0.6092 GB, free: 4.574 MB / 0.5261 GB
Notification: Performance of prepare preOptimizeDAE: time 2.73e-05/0.01384, allocations: 12.03 kB / 0.6092 GB, free: 4.562 MB / 0.5261 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001087/0.01395, allocations: 107.9 kB / 0.6093 GB, free: 4.457 MB / 0.5261 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.000335/0.01428, allocations: 325 kB / 0.6096 GB, free: 4.109 MB / 0.5261 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.919e-05/0.01431, allocations: 49.25 kB / 0.6097 GB, free: 4.062 MB / 0.5261 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 6.877e-05/0.01438, allocations: 75.5 kB / 0.6098 GB, free: 3.992 MB / 0.5261 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005107/0.01489, allocations: 0.6623 MB / 0.6104 GB, free: 3.258 MB / 0.5261 GB
Notification: Performance of preOpt findStateOrder (simulation): time 2.279e-05/0.01491, allocations: 15.88 kB / 0.6104 GB, free: 3.242 MB / 0.5261 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.873e-05/0.01494, allocations: 24 kB / 0.6105 GB, free: 3.219 MB / 0.5261 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.176e-05/0.01496, allocations: 19.94 kB / 0.6105 GB, free: 3.199 MB / 0.5261 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003394/0.01529, allocations: 421.6 kB / 0.6109 GB, free: 2.758 MB / 0.5261 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.00115/0.01644, allocations: 1.458 MB / 0.6123 GB, free: 1.258 MB / 0.5261 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0004504/0.01689, allocations: 0.5307 MB / 0.6128 GB, free: 0.6445 MB / 0.5261 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.000195/0.01709, allocations: 314.8 kB / 0.6131 GB, free: 296 kB / 0.5261 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.697e-05/0.01712, allocations: 15.94 kB / 0.6131 GB, free: 280 kB / 0.5261 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.3834/0.4006, allocations: 0.9453 MB / 0.6141 GB, free: 52.3 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=101): time 3.387e-06/0.4006, allocations: 1.062 kB / 0.6141 GB, free: 52.3 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=107): time 0.002456/0.403, allocations: 2.364 MB / 0.6164 GB, free: 50.95 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001066/0.4031, allocations: 0.65 MB / 0.617 GB, free: 50.2 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003429/0.4035, allocations: 456.5 kB / 0.6174 GB, free: 50.08 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 4.909e-05/0.4035, allocations: 60.53 kB / 0.6175 GB, free: 50.05 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0001195/0.4036, allocations: 239.1 kB / 0.6177 GB, free: 49.96 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 0.0001614/0.4038, allocations: 357.5 kB / 0.6181 GB, free: 49.75 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001854/0.404, allocations: 195.5 kB / 0.6182 GB, free: 49.73 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 9.157e-05/0.4041, allocations: 407.1 kB / 0.6186 GB, free: 49.42 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.000243/0.4043, allocations: 414.6 kB / 0.619 GB, free: 49.12 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.000337/0.4047, allocations: 0.7378 MB / 0.6197 GB, free: 48.42 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0007976/0.4054, allocations: 1.401 MB / 0.6211 GB, free: 47.34 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.971e-06/0.4055, allocations: 3.375 kB / 0.6211 GB, free: 47.34 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=161) (initialization): time 0.0008201/0.4063, allocations: 1.076 MB / 0.6222 GB, free: 46.71 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 7.925e-05/0.4064, allocations: 267.9 kB / 0.6224 GB, free: 46.43 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.64e-05/0.4064, allocations: 8.562 kB / 0.6224 GB, free: 46.43 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.436e-05/0.4064, allocations: 16.34 kB / 0.6225 GB, free: 46.43 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0006594/0.4071, allocations: 321.2 kB / 0.6228 GB, free: 46.41 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.511e-05/0.4071, allocations: 16.86 kB / 0.6228 GB, free: 46.41 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0003213/0.4074, allocations: 60.89 kB / 0.6228 GB, free: 46.41 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.936e-05/0.4074, allocations: 47.03 kB / 0.6229 GB, free: 46.4 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 30 variables:
         green_tee_drinker.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         green_tee_drinker.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         green_tee_drinker.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         green_tee_drinker.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         black_tea_drinker.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         black_tea_drinker.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         black_tea_drinker.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         black_tea_drinker.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         coffee_drinker.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         coffee_drinker.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         coffee_drinker.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         coffee_drinker.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         coffee_drinker.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         coffee_drinker.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         coffee_drinker.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         coffee_drinker.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         black_tea_drinker.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         black_tea_drinker.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         black_tea_drinker.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         black_tea_drinker.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         green_tee_drinker.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         green_tee_drinker.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         green_tee_drinker.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         green_tee_drinker.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         green_tee_drinker.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         green_tee_drinker.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         black_tea_drinker.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         black_tea_drinker.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         coffee_drinker.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         coffee_drinker.central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 38
 * Number of states: 0 ()
 * Number of discrete variables: 63 ($PRE.coffee_drinker.central.Cmin,coffee_drinker.central.Cmin,$PRE.coffee_drinker.central.Cmax,coffee_drinker.central.Cmax,$PRE.coffee_drinker.periodicDose.absorptionLumen.Cmin,coffee_drinker.periodicDose.absorptionLumen.Cmin,$PRE.coffee_drinker.periodicDose.absorptionLumen.Cmax,coffee_drinker.periodicDose.absorptionLumen.Cmax,$PRE.black_tea_drinker.central.Cmin,black_tea_drinker.central.Cmin,$PRE.black_tea_drinker.central.Cmax,black_tea_drinker.central.Cmax,$PRE.black_tea_drinker.periodicDose.absorptionLumen.Cmin,black_tea_drinker.periodicDose.absorptionLumen.Cmin,$PRE.black_tea_drinker.periodicDose.absorptionLumen.Cmax,black_tea_drinker.periodicDose.absorptionLumen.Cmax,$PRE.green_tee_drinker.central.Cmin,green_tee_drinker.central.Cmin,$PRE.green_tee_drinker.central.Cmax,green_tee_drinker.central.Cmax,$PRE.green_tee_drinker.periodicDose.absorptionLumen.Cmin,green_tee_drinker.periodicDose.absorptionLumen.Cmin,$PRE.green_tee_drinker.periodicDose.absorptionLumen.Cmax,green_tee_drinker.periodicDose.absorptionLumen.Cmax,$PRE.green_tee_drinker.periodicDose.pulse.count,$PRE.green_tee_drinker.periodicDose.pulse.T_start,$PRE.green_tee_drinker.periodicDose.absorptionLumen.rising,$PRE.green_tee_drinker.central.rising,green_tee_drinker.periodicDose.pulse.count,green_tee_drinker.periodicDose.pulse.T_start,green_tee_drinker.periodicDose.absorptionLumen.rising,green_tee_drinker.central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$PRE.black_tea_drinker.periodicDose.pulse.count,$PRE.black_tea_drinker.periodicDose.pulse.T_start,$PRE.black_tea_drinker.periodicDose.absorptionLumen.rising,$PRE.black_tea_drinker.central.rising,black_tea_drinker.periodicDose.pulse.count,black_tea_drinker.periodicDose.pulse.T_start,black_tea_drinker.periodicDose.absorptionLumen.rising,black_tea_drinker.central.rising,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$PRE.coffee_drinker.periodicDose.pulse.count,$PRE.coffee_drinker.periodicDose.pulse.T_start,$PRE.coffee_drinker.periodicDose.absorptionLumen.rising,$PRE.coffee_drinker.central.rising,coffee_drinker.periodicDose.pulse.count,coffee_drinker.periodicDose.pulse.T_start,coffee_drinker.periodicDose.absorptionLumen.rising,coffee_drinker.central.rising,$whenCondition15,$whenCondition14,$whenCondition13,$whenCondition12,$whenCondition11)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (152):
 * Single equations (assignments): 143
 * Array equations: 0
 * Algorithm blocks: 9
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.000387/0.4078, allocations: 0.5111 MB / 0.6234 GB, free: 46.04 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.000112/0.4079, allocations: 96 kB / 0.6235 GB, free: 46.04 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 7.934e-05/0.408, allocations: 92.17 kB / 0.6236 GB, free: 46.03 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 6.953e-06/0.408, allocations: 10.25 kB / 0.6236 GB, free: 46.03 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.106e-05/0.408, allocations: 0 / 0.6236 GB, free: 46.03 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 9.588e-06/0.408, allocations: 9.203 kB / 0.6236 GB, free: 46.03 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001186/0.4092, allocations: 1.464 MB / 0.625 GB, free: 45.29 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.605e-06/0.4092, allocations: 0 / 0.625 GB, free: 45.29 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005092/0.4097, allocations: 213.3 kB / 0.6252 GB, free: 45.29 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 6.342e-06/0.4097, allocations: 4.781 kB / 0.6252 GB, free: 45.29 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 4.05e-05/0.4098, allocations: 36.39 kB / 0.6252 GB, free: 45.29 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 4.418e-06/0.4098, allocations: 3.719 kB / 0.6252 GB, free: 45.29 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.174e-06/0.4098, allocations: 2.281 kB / 0.6253 GB, free: 45.29 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0008096/0.4106, allocations: 1.48 MB / 0.6267 GB, free: 44.39 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001758/0.4108, allocations: 94.42 kB / 0.6268 GB, free: 44.34 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 8.605e-05/0.4109, allocations: 44.19 kB / 0.6268 GB, free: 44.34 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002609/0.4111, allocations: 48.88 kB / 0.6269 GB, free: 44.34 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001275/0.4113, allocations: 89.98 kB / 0.627 GB, free: 44.34 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 3.25e-05/0.4113, allocations: 33.16 kB / 0.627 GB, free: 44.34 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.0001406/0.4114, allocations: 205.1 kB / 0.6272 GB, free: 44.32 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 9e-08/0.4114, allocations: 3.938 kB / 0.6272 GB, free: 44.31 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0004858/0.4119, allocations: 246.1 kB / 0.6274 GB, free: 44.31 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 5
 * Number of states: 21 (green_tee_drinker.central.C,green_tee_drinker.central.AUC,green_tee_drinker.elim.MExc,green_tee_drinker.periodicDose.TotalCumulativeMass,green_tee_drinker.periodicDose.absorptionLumen.C,green_tee_drinker.periodicDose.absorptionLumen.AUC,green_tee_drinker.periodicDose.variableDose.TotalCumulativeMass,black_tea_drinker.central.C,black_tea_drinker.central.AUC,black_tea_drinker.elim.MExc,black_tea_drinker.periodicDose.TotalCumulativeMass,black_tea_drinker.periodicDose.absorptionLumen.C,black_tea_drinker.periodicDose.absorptionLumen.AUC,black_tea_drinker.periodicDose.variableDose.TotalCumulativeMass,coffee_drinker.central.C,coffee_drinker.central.AUC,coffee_drinker.elim.MExc,coffee_drinker.periodicDose.TotalCumulativeMass,coffee_drinker.periodicDose.absorptionLumen.C,coffee_drinker.periodicDose.absorptionLumen.AUC,coffee_drinker.periodicDose.variableDose.TotalCumulativeMass)
 * Number of discrete variables: 39 ($whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,green_tee_drinker.central.Cmax,green_tee_drinker.central.Cmin,green_tee_drinker.central.rising,green_tee_drinker.periodicDose.absorptionLumen.Cmax,green_tee_drinker.periodicDose.absorptionLumen.Cmin,green_tee_drinker.periodicDose.absorptionLumen.rising,green_tee_drinker.periodicDose.pulse.T_start,green_tee_drinker.periodicDose.pulse.count,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,black_tea_drinker.central.Cmax,black_tea_drinker.central.Cmin,black_tea_drinker.central.rising,black_tea_drinker.periodicDose.absorptionLumen.Cmax,black_tea_drinker.periodicDose.absorptionLumen.Cmin,black_tea_drinker.periodicDose.absorptionLumen.rising,black_tea_drinker.periodicDose.pulse.T_start,black_tea_drinker.periodicDose.pulse.count,$whenCondition11,$whenCondition12,$whenCondition13,$whenCondition14,$whenCondition15,coffee_drinker.central.Cmax,coffee_drinker.central.Cmin,coffee_drinker.central.rising,coffee_drinker.periodicDose.absorptionLumen.Cmax,coffee_drinker.periodicDose.absorptionLumen.Cmin,coffee_drinker.periodicDose.absorptionLumen.rising,coffee_drinker.periodicDose.pulse.T_start,coffee_drinker.periodicDose.pulse.count)
 * Number of discrete states: 33 (coffee_drinker.periodicDose.pulse.count,coffee_drinker.central.Cmin,$whenCondition15,coffee_drinker.central.Cmax,$whenCondition14,coffee_drinker.central.rising,coffee_drinker.periodicDose.absorptionLumen.Cmin,$whenCondition13,coffee_drinker.periodicDose.absorptionLumen.Cmax,$whenCondition12,coffee_drinker.periodicDose.absorptionLumen.rising,black_tea_drinker.periodicDose.pulse.count,black_tea_drinker.central.Cmin,$whenCondition10,black_tea_drinker.central.Cmax,$whenCondition9,black_tea_drinker.central.rising,black_tea_drinker.periodicDose.absorptionLumen.Cmin,$whenCondition8,black_tea_drinker.periodicDose.absorptionLumen.Cmax,$whenCondition7,black_tea_drinker.periodicDose.absorptionLumen.rising,green_tee_drinker.periodicDose.pulse.count,green_tee_drinker.central.Cmin,$whenCondition5,green_tee_drinker.central.Cmax,$whenCondition4,green_tee_drinker.central.rising,green_tee_drinker.periodicDose.absorptionLumen.Cmin,$whenCondition3,green_tee_drinker.periodicDose.absorptionLumen.Cmax,$whenCondition2,green_tee_drinker.periodicDose.absorptionLumen.rising)
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (89):
 * Single equations (assignments): 77
 * Array equations: 0
 * Algorithm blocks: 6
 * Record equations: 0
 * When equations: 6
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0001536/0.4121, allocations: 182.9 kB / 0.6276 GB, free: 44.23 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0007808/0.4128, allocations: 1.43 MB / 0.629 GB, free: 43.14 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 1.336e-05/0.4129, allocations: 10.56 kB / 0.629 GB, free: 43.13 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 0.0004291/0.4133, allocations: 0.7694 MB / 0.6298 GB, free: 42.55 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008368/0.4141, allocations: 281.3 kB / 0.63 GB, free: 42.5 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002542/0.4167, allocations: 1.886 MB / 0.6319 GB, free: 41.4 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0001204/0.4168, allocations: 173.3 kB / 0.632 GB, free: 41.29 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 0.000307/0.4171, allocations: 96.83 kB / 0.6321 GB, free: 41.25 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0005082/0.4176, allocations: 342 kB / 0.6325 GB, free: 41.15 MB / 0.5262 GB
Notification: Performance of SimCode: time 1.634e-06/0.4176, allocations: 0 / 0.6325 GB, free: 41.15 MB / 0.5262 GB
Notification: Performance of Templates: time 0.0202/0.4378, allocations: 15.66 MB / 0.6477 GB, free: 34.25 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_Caffeine.PK_population_Caffeine.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.889075078070164]