Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001024/0.001024, allocations: 80.94 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00151/0.00151, allocations: 177 kB / 23.36 MB, free: 1.133 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.962/0.962, allocations: 177.1 MB / 203.8 MB, free: 5.492 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.61/1.61, allocations: 273.5 MB / 0.5212 GB, free: 14.73 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites,tolerance=1e-09,outputFormat="empty",numberOfIntervals=864000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.383e-06/1.383e-06, allocations: 0 / 0.5956 GB, free: 2.566 MB / 0.5105 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.591e-05/1.729e-05, allocations: 6.25 kB / 0.5956 GB, free: 2.559 MB / 0.5105 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites): time 0.004424/0.004441, allocations: 5.684 MB / 0.6012 GB, free: 12.94 MB / 0.5261 GB Notification: Performance of NFInst.instExpressions: time 0.001797/0.006238, allocations: 1.353 MB / 0.6025 GB, free: 11.59 MB / 0.5261 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002392/0.006477, allocations: 8 kB / 0.6025 GB, free: 11.59 MB / 0.5261 GB Notification: Performance of NFTyping.typeComponents: time 0.0002391/0.006716, allocations: 135.9 kB / 0.6027 GB, free: 11.45 MB / 0.5261 GB Notification: Performance of NFTyping.typeBindings: time 0.0005674/0.007283, allocations: 363.9 kB / 0.603 GB, free: 11.11 MB / 0.5261 GB Notification: Performance of NFTyping.typeClassSections: time 0.000425/0.007708, allocations: 263.6 kB / 0.6033 GB, free: 10.85 MB / 0.5261 GB Notification: Performance of NFFlatten.flatten: time 0.0009356/0.008644, allocations: 1.271 MB / 0.6045 GB, free: 9.57 MB / 0.5261 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0002869/0.008931, allocations: 217.4 kB / 0.6047 GB, free: 9.336 MB / 0.5261 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0005182/0.009449, allocations: 0.6665 MB / 0.6054 GB, free: 8.668 MB / 0.5261 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0004286/0.009877, allocations: 382.9 kB / 0.6057 GB, free: 8.293 MB / 0.5261 GB Notification: Performance of NFPackage.collectConstants: time 0.0001002/0.009978, allocations: 108 kB / 0.6058 GB, free: 8.188 MB / 0.5261 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0001005/0.01008, allocations: 112 kB / 0.6059 GB, free: 8.078 MB / 0.5261 GB Notification: Performance of NFScalarize.scalarize: time 0.0001107/0.01019, allocations: 207.2 kB / 0.6061 GB, free: 7.875 MB / 0.5261 GB Notification: Performance of NFVerifyModel.verify: time 0.0002572/0.01045, allocations: 383.2 kB / 0.6065 GB, free: 7.5 MB / 0.5261 GB Notification: Performance of NFConvertDAE.convert: time 0.0005404/0.01099, allocations: 0.7514 MB / 0.6072 GB, free: 6.746 MB / 0.5261 GB Notification: Performance of FrontEnd - DAE generated: time 2.895e-06/0.01099, allocations: 0 / 0.6072 GB, free: 6.746 MB / 0.5261 GB Notification: Performance of FrontEnd: time 8.32e-07/0.01099, allocations: 0 / 0.6072 GB, free: 6.746 MB / 0.5261 GB Notification: Performance of Transformations before backend: time 7.053e-06/0.011, allocations: 0 / 0.6072 GB, free: 6.746 MB / 0.5261 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 165 * Number of variables: 165 Notification: Performance of Generate backend data structure: time 0.001207/0.0122, allocations: 1.349 MB / 0.6085 GB, free: 5.309 MB / 0.5261 GB Notification: Performance of prepare preOptimizeDAE: time 2.999e-05/0.01223, allocations: 12.03 kB / 0.6086 GB, free: 5.297 MB / 0.5261 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001177/0.01235, allocations: 116.8 kB / 0.6087 GB, free: 5.184 MB / 0.5261 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003546/0.01271, allocations: 337.4 kB / 0.609 GB, free: 4.824 MB / 0.5261 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.96e-05/0.01275, allocations: 49.69 kB / 0.609 GB, free: 4.773 MB / 0.5261 GB Notification: Performance of preOpt expandDerOperator (simulation): time 7.387e-05/0.01282, allocations: 88.25 kB / 0.6091 GB, free: 4.688 MB / 0.5261 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.0005637/0.01338, allocations: 0.6754 MB / 0.6098 GB, free: 3.953 MB / 0.5261 GB Notification: Performance of preOpt findStateOrder (simulation): time 2.6e-05/0.01341, allocations: 11.88 kB / 0.6098 GB, free: 3.941 MB / 0.5261 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 3.399e-05/0.01344, allocations: 28 kB / 0.6098 GB, free: 3.914 MB / 0.5261 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.115e-05/0.01346, allocations: 12 kB / 0.6098 GB, free: 3.902 MB / 0.5261 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003517/0.01381, allocations: 436.4 kB / 0.6102 GB, free: 3.441 MB / 0.5261 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001494/0.0153, allocations: 1.378 MB / 0.6116 GB, free: 2.035 MB / 0.5261 GB Notification: Performance of preOpt comSubExp (simulation): time 0.0003466/0.01565, allocations: 459.5 kB / 0.612 GB, free: 1.547 MB / 0.5261 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0001942/0.01584, allocations: 293.7 kB / 0.6123 GB, free: 1.223 MB / 0.5261 GB Notification: Performance of preOpt evalFunc (simulation): time 2.141e-05/0.01586, allocations: 16.66 kB / 0.6123 GB, free: 1.207 MB / 0.5261 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0005005/0.01636, allocations: 0.8678 MB / 0.6132 GB, free: 220 kB / 0.5261 GB Notification: Performance of pre-optimization done (n=99): time 1.954e-06/0.01637, allocations: 3.938 kB / 0.6132 GB, free: 216 kB / 0.5261 GB Notification: Performance of matching and sorting (n=105): time 0.3522/0.3686, allocations: 2.171 MB / 0.6153 GB, free: 52.36 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 8.902e-05/0.3687, allocations: 0.5493 MB / 0.6158 GB, free: 51.73 MB / 0.5262 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003445/0.369, allocations: 447.6 kB / 0.6163 GB, free: 51.62 MB / 0.5262 GB Notification: Performance of collectPreVariables (initialization): time 4.457e-05/0.3691, allocations: 59.89 kB / 0.6163 GB, free: 51.59 MB / 0.5262 GB Notification: Performance of collectInitialEqns (initialization): time 0.0001198/0.3692, allocations: 262.2 kB / 0.6166 GB, free: 51.49 MB / 0.5262 GB Notification: Performance of collectInitialBindings (initialization): time 0.0001509/0.3693, allocations: 361.5 kB / 0.6169 GB, free: 51.27 MB / 0.5262 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001676/0.3695, allocations: 186.2 kB / 0.6171 GB, free: 51.26 MB / 0.5262 GB Notification: Performance of setup shared object (initialization): time 9.071e-05/0.3696, allocations: 407.1 kB / 0.6175 GB, free: 50.95 MB / 0.5262 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002492/0.3699, allocations: 410.3 kB / 0.6179 GB, free: 50.65 MB / 0.5262 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.0003084/0.3702, allocations: 0.6905 MB / 0.6185 GB, free: 49.99 MB / 0.5262 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.0008103/0.371, allocations: 1.374 MB / 0.6199 GB, free: 48.95 MB / 0.5262 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 8.305e-06/0.371, allocations: 4.219 kB / 0.6199 GB, free: 48.95 MB / 0.5262 GB Notification: Performance of matching and sorting (n=157) (initialization): time 0.0007746/0.3718, allocations: 1.053 MB / 0.6209 GB, free: 48.32 MB / 0.5262 GB Notification: Performance of prepare postOptimizeDAE: time 6.616e-05/0.3718, allocations: 263.6 kB / 0.6212 GB, free: 48.04 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.218e-05/0.3718, allocations: 11.72 kB / 0.6212 GB, free: 48.04 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (initialization): time 2.431e-05/0.3719, allocations: 14.44 kB / 0.6212 GB, free: 48.04 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.000697/0.3726, allocations: 306.2 kB / 0.6215 GB, free: 48.02 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.551e-05/0.3726, allocations: 14.09 kB / 0.6215 GB, free: 48.02 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000282/0.3728, allocations: 59.97 kB / 0.6216 GB, free: 48.02 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.306e-05/0.3729, allocations: 41.56 kB / 0.6216 GB, free: 48.02 MB / 0.5262 GB Warning: Assuming fixed start value for the following 30 variables: remdesivir.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real remdesivir.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real remdesivir.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_704277.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_704277.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real GS_441524.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real GS_441524.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_704277.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real remdesivir.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real GS_441524.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_441524.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean GS_704277.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean remdesivir.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 32 * Number of states: 0 () * Number of discrete variables: 63 ($PRE.GS_441524.peripheral.Cmin,GS_441524.peripheral.Cmin,$PRE.GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmax,$PRE.GS_441524.central.Cmin,GS_441524.central.Cmin,$PRE.GS_441524.central.Cmax,GS_441524.central.Cmax,$PRE.GS_704277.peripheral.Cmin,GS_704277.peripheral.Cmin,$PRE.GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmax,$PRE.GS_704277.central.Cmin,GS_704277.central.Cmin,$PRE.GS_704277.central.Cmax,GS_704277.central.Cmax,$PRE.remdesivir.peripheral.Cmin,remdesivir.peripheral.Cmin,$PRE.remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmax,$PRE.remdesivir.central.Cmin,remdesivir.central.Cmin,$PRE.remdesivir.central.Cmax,remdesivir.central.Cmax,$PRE.GS_441524.peripheral.rising,$PRE.GS_441524.periodicDose.pulse.count,$PRE.GS_441524.periodicDose.pulse.T_start,$PRE.GS_441524.central.rising,$PRE.GS_704277.peripheral.rising,$PRE.GS_704277.periodicDose.pulse.count,$PRE.GS_704277.periodicDose.pulse.T_start,$PRE.GS_704277.central.rising,$PRE.remdesivir.peripheral.rising,$PRE.remdesivir.periodicDose.pulse.count,$PRE.remdesivir.periodicDose.pulse.T_start,$PRE.remdesivir.central.rising,GS_441524.peripheral.rising,GS_441524.periodicDose.pulse.count,GS_441524.periodicDose.pulse.T_start,GS_441524.central.rising,GS_704277.peripheral.rising,GS_704277.periodicDose.pulse.count,GS_704277.periodicDose.pulse.T_start,GS_704277.central.rising,remdesivir.peripheral.rising,remdesivir.periodicDose.pulse.count,remdesivir.periodicDose.pulse.T_start,remdesivir.central.rising,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition7,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition13,$whenCondition14,$whenCondition15) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (148): * Single equations (assignments): 139 * Array equations: 0 * Algorithm blocks: 9 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0003508/0.3732, allocations: 0.499 MB / 0.6221 GB, free: 47.67 MB / 0.5262 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 9.214e-05/0.3733, allocations: 97.64 kB / 0.6222 GB, free: 47.66 MB / 0.5262 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 6.756e-05/0.3734, allocations: 85.16 kB / 0.6223 GB, free: 47.65 MB / 0.5262 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 5.481e-06/0.3734, allocations: 8.938 kB / 0.6223 GB, free: 47.65 MB / 0.5262 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 9.608e-06/0.3734, allocations: 1.531 kB / 0.6223 GB, free: 47.65 MB / 0.5262 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.596e-06/0.3734, allocations: 5.562 kB / 0.6223 GB, free: 47.65 MB / 0.5262 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.001155/0.3746, allocations: 1.292 MB / 0.6235 GB, free: 47.05 MB / 0.5262 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.485e-06/0.3746, allocations: 3.969 kB / 0.6235 GB, free: 47.05 MB / 0.5262 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0005261/0.3751, allocations: 206.6 kB / 0.6237 GB, free: 47.05 MB / 0.5262 GB Notification: Performance of postOpt tearingSystem (simulation): time 5.06e-06/0.3751, allocations: 4.25 kB / 0.6237 GB, free: 47.05 MB / 0.5262 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 4.075e-05/0.3752, allocations: 39.66 kB / 0.6238 GB, free: 47.05 MB / 0.5262 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 3.116e-06/0.3752, allocations: 3.656 kB / 0.6238 GB, free: 47.05 MB / 0.5262 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.372e-06/0.3752, allocations: 0 / 0.6238 GB, free: 47.05 MB / 0.5262 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0007539/0.3759, allocations: 1.314 MB / 0.6251 GB, free: 46.32 MB / 0.5262 GB Notification: Performance of postOpt removeConstants (simulation): time 5.593e-05/0.376, allocations: 62.61 kB / 0.6251 GB, free: 46.27 MB / 0.5262 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 8.167e-05/0.3761, allocations: 44 kB / 0.6252 GB, free: 46.27 MB / 0.5262 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0002014/0.3763, allocations: 44.69 kB / 0.6252 GB, free: 46.27 MB / 0.5262 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001104/0.3764, allocations: 90.36 kB / 0.6253 GB, free: 46.27 MB / 0.5262 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 3.093e-05/0.3764, allocations: 28.28 kB / 0.6253 GB, free: 46.27 MB / 0.5262 GB Notification: Performance of sorting global known variables: time 0.0001292/0.3765, allocations: 196.1 kB / 0.6255 GB, free: 46.25 MB / 0.5262 GB Notification: Performance of sort global known variables: time 8e-08/0.3765, allocations: 0 / 0.6255 GB, free: 46.25 MB / 0.5262 GB Notification: Performance of remove unused functions: time 0.0004037/0.3769, allocations: 260.3 kB / 0.6258 GB, free: 46.25 MB / 0.5262 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 1 * Number of states: 21 (remdesivir.central.C,remdesivir.central.AUC,remdesivir.elim.MExc,remdesivir.periodicDose.TotalCumulativeMass,remdesivir.periodicDose.variableDose.TotalCumulativeMass,remdesivir.peripheral.C,remdesivir.peripheral.AUC,GS_704277.central.C,GS_704277.central.AUC,GS_704277.elim.MExc,GS_704277.periodicDose.TotalCumulativeMass,GS_704277.periodicDose.variableDose.TotalCumulativeMass,GS_704277.peripheral.C,GS_704277.peripheral.AUC,GS_441524.central.C,GS_441524.central.AUC,GS_441524.elim.MExc,GS_441524.periodicDose.TotalCumulativeMass,GS_441524.periodicDose.variableDose.TotalCumulativeMass,GS_441524.peripheral.C,GS_441524.peripheral.AUC) * Number of discrete variables: 39 ($whenCondition15,$whenCondition14,$whenCondition13,$whenCondition1,$whenCondition2,$whenCondition3,$whenCondition4,$whenCondition5,$whenCondition6,$whenCondition7,$whenCondition8,$whenCondition9,$whenCondition10,$whenCondition11,$whenCondition12,remdesivir.central.Cmax,remdesivir.central.Cmin,remdesivir.central.rising,remdesivir.periodicDose.pulse.T_start,remdesivir.periodicDose.pulse.count,remdesivir.peripheral.Cmax,remdesivir.peripheral.Cmin,remdesivir.peripheral.rising,GS_704277.central.Cmax,GS_704277.central.Cmin,GS_704277.central.rising,GS_704277.periodicDose.pulse.T_start,GS_704277.periodicDose.pulse.count,GS_704277.peripheral.Cmax,GS_704277.peripheral.Cmin,GS_704277.peripheral.rising,GS_441524.central.Cmax,GS_441524.central.Cmin,GS_441524.central.rising,GS_441524.periodicDose.pulse.T_start,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmax,GS_441524.peripheral.Cmin,GS_441524.peripheral.rising) * Number of discrete states: 33 (remdesivir.periodicDose.pulse.count,GS_704277.periodicDose.pulse.count,GS_441524.periodicDose.pulse.count,GS_441524.peripheral.Cmin,$whenCondition12,GS_441524.peripheral.Cmax,$whenCondition11,GS_441524.peripheral.rising,GS_441524.central.Cmin,$whenCondition10,GS_441524.central.Cmax,$whenCondition9,GS_441524.central.rising,GS_704277.peripheral.Cmin,$whenCondition8,GS_704277.peripheral.Cmax,$whenCondition7,GS_704277.peripheral.rising,GS_704277.central.Cmin,$whenCondition6,GS_704277.central.Cmax,$whenCondition5,GS_704277.central.rising,remdesivir.peripheral.Cmin,$whenCondition4,remdesivir.peripheral.Cmax,$whenCondition3,remdesivir.peripheral.rising,remdesivir.central.Cmin,$whenCondition2,remdesivir.central.Cmax,$whenCondition1,remdesivir.central.rising) * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (87): * Single equations (assignments): 75 * Array equations: 0 * Algorithm blocks: 6 * Record equations: 0 * When equations: 6 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of Backend phase and start with SimCode phase: time 0.0001401/0.3771, allocations: 168.8 kB / 0.6259 GB, free: 46.16 MB / 0.5262 GB Notification: Performance of simCode: created initialization part: time 0.0006371/0.3777, allocations: 1.408 MB / 0.6273 GB, free: 45.08 MB / 0.5262 GB Notification: Performance of simCode: created event and clocks part: time 6.612e-06/0.3777, allocations: 5.75 kB / 0.6273 GB, free: 45.08 MB / 0.5262 GB Notification: Performance of simCode: created simulation system equations: time 0.0003924/0.3781, allocations: 0.7754 MB / 0.6281 GB, free: 44.48 MB / 0.5262 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0005893/0.3787, allocations: 265.2 kB / 0.6283 GB, free: 44.47 MB / 0.5262 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.002617/0.3813, allocations: 1.912 MB / 0.6302 GB, free: 43.53 MB / 0.5262 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 9.765e-05/0.3814, allocations: 179.7 kB / 0.6303 GB, free: 43.42 MB / 0.5262 GB Notification: Performance of simCode: alias equations: time 0.0002316/0.3816, allocations: 84.52 kB / 0.6304 GB, free: 43.39 MB / 0.5262 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.000442/0.3821, allocations: 332.9 kB / 0.6307 GB, free: 43.3 MB / 0.5262 GB Notification: Performance of SimCode: time 7.92e-07/0.3821, allocations: 0 / 0.6307 GB, free: 43.3 MB / 0.5262 GB Notification: Performance of Templates: time 0.01503/0.3971, allocations: 14.79 MB / 0.6452 GB, free: 36.89 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J05A_DirectActingAntivirals.J05AB16_Remdesivir.Remdesivir_2C_metabolites.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 6.472235699184239]