Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001374/0.001374, allocations: 80.88 kB / 19.94 MB, free: 4.551 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001002/0.001002, allocations: 177 kB / 23.36 MB, free: 1.137 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9882/0.9882, allocations: 177.1 MB / 203.8 MB, free: 5.465 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.666/1.666, allocations: 273.5 MB / 0.5213 GB, free: 14.61 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.515e-06/2.515e-06, allocations: 1.422 kB / 0.5954 GB, free: 2.66 MB / 0.5105 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.268e-05/3.52e-05, allocations: 5.547 kB / 0.5954 GB, free: 2.656 MB / 0.5105 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.003361/0.003396, allocations: 1.344 MB / 0.5968 GB, free: 1.316 MB / 0.5105 GB
Notification: Performance of NFInst.instExpressions: time 0.0003497/0.003746, allocations: 54.94 kB / 0.5968 GB, free: 1.266 MB / 0.5105 GB
Notification: Performance of NFInst.updateImplicitVariability: time 5.545e-05/0.003801, allocations: 11.94 kB / 0.5968 GB, free: 1.254 MB / 0.5105 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001193/0.003921, allocations: 3.984 kB / 0.5968 GB, free: 1.25 MB / 0.5105 GB
Notification: Performance of NFTyping.typeBindings: time 6.287e-05/0.003984, allocations: 6.453 kB / 0.5968 GB, free: 1.246 MB / 0.5105 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0002243/0.004208, allocations: 11.98 kB / 0.5968 GB, free: 1.234 MB / 0.5105 GB
Notification: Performance of NFFlatten.flatten: time 0.0002222/0.00443, allocations: 149.1 kB / 0.597 GB, free: 1.094 MB / 0.5105 GB
Notification: Performance of NFFlatten.resolveConnections: time 5.013e-05/0.00448, allocations: 3.938 kB / 0.597 GB, free: 1.09 MB / 0.5105 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001629/0.004643, allocations: 81.22 kB / 0.5971 GB, free: 1.012 MB / 0.5105 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.000212/0.004855, allocations: 86.48 kB / 0.5971 GB, free: 0.9297 MB / 0.5105 GB
Notification: Performance of NFPackage.collectConstants: time 3.555e-05/0.004891, allocations: 8 kB / 0.5972 GB, free: 0.9219 MB / 0.5105 GB
Notification: Performance of NFFlatten.collectFunctions: time 2.205e-05/0.004913, allocations: 8 kB / 0.5972 GB, free: 0.9141 MB / 0.5105 GB
Notification: Performance of NFScalarize.scalarize: time 4.403e-05/0.004957, allocations: 26.8 kB / 0.5972 GB, free: 0.8906 MB / 0.5105 GB
Notification: Performance of NFVerifyModel.verify: time 5.42e-05/0.005011, allocations: 33.27 kB / 0.5972 GB, free: 0.8594 MB / 0.5105 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001542/0.005165, allocations: 94.58 kB / 0.5973 GB, free: 0.7695 MB / 0.5105 GB
Notification: Performance of FrontEnd - DAE generated: time 3.617e-06/0.005169, allocations: 0 / 0.5973 GB, free: 0.7695 MB / 0.5105 GB
Notification: Performance of FrontEnd: time 1.132e-06/0.00517, allocations: 0 / 0.5973 GB, free: 0.7695 MB / 0.5105 GB
Notification: Performance of Transformations before backend: time 4.88e-06/0.005175, allocations: 0 / 0.5973 GB, free: 0.7695 MB / 0.5105 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.001175/0.00635, allocations: 482 kB / 0.5978 GB, free: 280 kB / 0.5105 GB
Notification: Performance of prepare preOptimizeDAE: time 4.537e-05/0.006395, allocations: 16.03 kB / 0.5978 GB, free: 264 kB / 0.5105 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.863e-05/0.006444, allocations: 8.938 kB / 0.5978 GB, free: 256 kB / 0.5105 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001632/0.006607, allocations: 117.7 kB / 0.5979 GB, free: 112 kB / 0.5105 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.107e-05/0.006618, allocations: 384 / 0.5979 GB, free: 112 kB / 0.5105 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.829e-05/0.006636, allocations: 4.375 kB / 0.5979 GB, free: 108 kB / 0.5105 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003745/0.007011, allocations: 157.8 kB / 0.5981 GB, free: 15.94 MB / 0.5261 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.103e-05/0.007022, allocations: 4.125 kB / 0.5981 GB, free: 15.94 MB / 0.5261 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.678e-05/0.007039, allocations: 384 / 0.5981 GB, free: 15.94 MB / 0.5261 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.822e-06/0.007045, allocations: 384 / 0.5981 GB, free: 15.94 MB / 0.5261 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 7.809e-05/0.007123, allocations: 23.92 kB / 0.5981 GB, free: 15.91 MB / 0.5261 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002195/0.007343, allocations: 173.4 kB / 0.5982 GB, free: 15.73 MB / 0.5261 GB
Notification: Performance of preOpt comSubExp (simulation): time 6.274e-05/0.007406, allocations: 34.55 kB / 0.5983 GB, free: 15.68 MB / 0.5261 GB
Notification: Performance of preOpt resolveLoops (simulation): time 5.308e-05/0.007459, allocations: 30.03 kB / 0.5983 GB, free: 15.65 MB / 0.5261 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.304e-05/0.007472, allocations: 4 kB / 0.5983 GB, free: 15.65 MB / 0.5261 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.264e-05/0.007495, allocations: 34.56 kB / 0.5983 GB, free: 15.61 MB / 0.5261 GB
Notification: Performance of pre-optimization done (n=11): time 1.122e-06/0.007496, allocations: 0 / 0.5983 GB, free: 15.61 MB / 0.5261 GB
Notification: Performance of matching and sorting (n=11): time 0.0001928/0.007688, allocations: 87.67 kB / 0.5984 GB, free: 15.52 MB / 0.5261 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.125e-05/0.00772, allocations: 59.28 kB / 0.5985 GB, free: 15.45 MB / 0.5261 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 6.943e-05/0.007789, allocations: 114.7 kB / 0.5986 GB, free: 15.32 MB / 0.5261 GB
Notification: Performance of collectPreVariables (initialization): time 1.493e-05/0.007804, allocations: 29.7 kB / 0.5986 GB, free: 15.29 MB / 0.5261 GB
Notification: Performance of collectInitialEqns (initialization): time 4.174e-05/0.007846, allocations: 89.44 kB / 0.5987 GB, free: 15.2 MB / 0.5261 GB
Notification: Performance of collectInitialBindings (initialization): time 2.429e-05/0.00787, allocations: 35.69 kB / 0.5987 GB, free: 15.16 MB / 0.5261 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.552e-05/0.007916, allocations: 33.64 kB / 0.5988 GB, free: 15.12 MB / 0.5261 GB
Notification: Performance of setup shared object (initialization): time 7.957e-05/0.007995, allocations: 322.8 kB / 0.5991 GB, free: 14.8 MB / 0.5261 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 3.652e-05/0.008032, allocations: 8 kB / 0.5991 GB, free: 14.79 MB / 0.5261 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 4.389e-05/0.008076, allocations: 23.02 kB / 0.5991 GB, free: 14.76 MB / 0.5261 GB
Notification: Performance of analyzeInitialSystem (initialization): time 9.328e-05/0.008169, allocations: 58.14 kB / 0.5992 GB, free: 14.7 MB / 0.5261 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.834e-06/0.008171, allocations: 0 / 0.5992 GB, free: 14.7 MB / 0.5261 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0001237/0.008294, allocations: 73.59 kB / 0.5992 GB, free: 14.62 MB / 0.5261 GB
Notification: Performance of prepare postOptimizeDAE: time 1.458e-05/0.008309, allocations: 12.28 kB / 0.5993 GB, free: 14.61 MB / 0.5261 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.871e-06/0.008315, allocations: 0 / 0.5993 GB, free: 14.61 MB / 0.5261 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.179e-05/0.008327, allocations: 0 / 0.5993 GB, free: 14.61 MB / 0.5261 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002307/0.008557, allocations: 83.83 kB / 0.5993 GB, free: 14.53 MB / 0.5261 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.927e-06/0.008561, allocations: 0 / 0.5993 GB, free: 14.53 MB / 0.5261 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001322/0.008693, allocations: 55.94 kB / 0.5994 GB, free: 14.48 MB / 0.5261 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.168e-05/0.008705, allocations: 0 / 0.5994 GB, free: 14.48 MB / 0.5261 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 7.58e-05/0.008781, allocations: 124.6 kB / 0.5995 GB, free: 14.34 MB / 0.5261 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.5e-05/0.008796, allocations: 4 kB / 0.5995 GB, free: 14.34 MB / 0.5261 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.00022/0.009016, allocations: 153.8 kB / 0.5997 GB, free: 14.19 MB / 0.5261 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 3.968e-06/0.00902, allocations: 4 kB / 0.5997 GB, free: 14.18 MB / 0.5261 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.906e-06/0.009023, allocations: 0 / 0.5997 GB, free: 14.18 MB / 0.5261 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.126e-06/0.009026, allocations: 1.312 kB / 0.5997 GB, free: 14.18 MB / 0.5261 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001219/0.009148, allocations: 113.7 kB / 0.5998 GB, free: 14.05 MB / 0.5261 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.453e-06/0.009149, allocations: 0 / 0.5998 GB, free: 14.05 MB / 0.5261 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0002068/0.009356, allocations: 83.92 kB / 0.5998 GB, free: 13.97 MB / 0.5261 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.214e-06/0.009358, allocations: 0 / 0.5998 GB, free: 13.97 MB / 0.5261 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 1.314e-05/0.009371, allocations: 8 kB / 0.5999 GB, free: 13.96 MB / 0.5261 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.513e-06/0.009373, allocations: 0 / 0.5999 GB, free: 13.96 MB / 0.5261 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.554e-06/0.009376, allocations: 3.562 kB / 0.5999 GB, free: 13.96 MB / 0.5261 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001547/0.00953, allocations: 128.9 kB / 0.6 GB, free: 13.82 MB / 0.5261 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.381e-05/0.009544, allocations: 11.91 kB / 0.6 GB, free: 13.81 MB / 0.5261 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.737e-05/0.009561, allocations: 11.94 kB / 0.6 GB, free: 13.8 MB / 0.5261 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001243/0.009686, allocations: 55.44 kB / 0.6001 GB, free: 13.75 MB / 0.5261 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 6.049e-05/0.009746, allocations: 29.27 kB / 0.6001 GB, free: 13.72 MB / 0.5261 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 9.538e-06/0.009756, allocations: 4 kB / 0.6001 GB, free: 13.71 MB / 0.5261 GB
Notification: Performance of sorting global known variables: time 1.392e-05/0.00977, allocations: 16.86 kB / 0.6001 GB, free: 13.7 MB / 0.5261 GB
Notification: Performance of sort global known variables: time 4e-08/0.00977, allocations: 0 / 0.6001 GB, free: 13.7 MB / 0.5261 GB
Notification: Performance of remove unused functions: time 0.0001235/0.009893, allocations: 35.98 kB / 0.6001 GB, free: 13.66 MB / 0.5261 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (21):
 * Single equations (assignments): 21
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 8.645e-05/0.00998, allocations: 76.36 kB / 0.6002 GB, free: 13.57 MB / 0.5261 GB
Notification: Performance of simCode: created initialization part: time 0.0001369/0.01012, allocations: 65.5 kB / 0.6003 GB, free: 13.51 MB / 0.5261 GB
Notification: Performance of simCode: created event and clocks part: time 4.128e-06/0.01012, allocations: 0 / 0.6003 GB, free: 13.51 MB / 0.5261 GB
Notification: Performance of simCode: created simulation system equations: time 6.805e-05/0.01019, allocations: 51.34 kB / 0.6003 GB, free: 13.46 MB / 0.5261 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0001127/0.0103, allocations: 25.36 kB / 0.6003 GB, free: 13.43 MB / 0.5261 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0004814/0.01078, allocations: 231.4 kB / 0.6006 GB, free: 13.18 MB / 0.5261 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 3.738e-05/0.01082, allocations: 67.97 kB / 0.6006 GB, free: 13.09 MB / 0.5261 GB
Notification: Performance of simCode: alias equations: time 6.273e-05/0.01088, allocations: 16.48 kB / 0.6006 GB, free: 13.07 MB / 0.5261 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001222/0.01101, allocations: 71.38 kB / 0.6007 GB, free: 13 MB / 0.5261 GB
Notification: Performance of SimCode: time 7.31e-07/0.01101, allocations: 0 / 0.6007 GB, free: 13 MB / 0.5261 GB
Notification: Performance of Templates: time 0.003963/0.01497, allocations: 2.596 MB / 0.6033 GB, free: 10.47 MB / 0.5261 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.708314089104533]