Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009993/0.0009993, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001104/0.001104, allocations: 181 kB / 23.36 MB, free: 1.129 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9671/0.9671, allocations: 177.1 MB / 203.8 MB, free: 5.488 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.683/1.683, allocations: 273.5 MB / 0.5212 GB, free: 14.67 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2,tolerance=1e-12,outputFormat="empty",numberOfIntervals=1000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.374e-06/2.374e-06, allocations: 0 / 0.5954 GB, free: 2.719 MB / 0.5105 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.535e-05/2.772e-05, allocations: 10.25 kB / 0.5954 GB, free: 2.707 MB / 0.5105 GB
Notification: Bodylight requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Automatically loaded package Bodylight 1.0 due to usage.
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2): time 0.4737/0.4737, allocations: 49.79 MB / 0.6441 GB, free: 24.9 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.004639/0.4783, allocations: 5.157 MB / 0.6491 GB, free: 21.07 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001929/0.4785, allocations: 26.94 kB / 0.6491 GB, free: 21.06 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001666/0.4787, allocations: 58.77 kB / 0.6492 GB, free: 21 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.UnitConversions.findUnit'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:6207:6-6223:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit' contains a call to impure function 'Modelica.Utilities.Streams.print'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5637:15-5729:17:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.readReal' contains a call to impure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.UnitConversions.findUnit'.
Notification: Performance of NFTyping.typeBindings: time 0.001203/0.4799, allocations: 0.7413 MB / 0.6499 GB, free: 20.48 MB / 0.5262 GB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.SusceptibleCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.InfectedCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.ViralParticles.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.RecoveredCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5783:15-5804:18:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeReal' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Bodylight 1.1.0/Types.mo:5845:15-5881:24:writable] Warning: Pure function 'Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.DeadCells.Utilities.writeComparison' contains a call to impure function 'Modelica.Utilities.Files.createDirectory'.
Notification: Performance of NFTyping.typeClassSections: time 0.001017/0.4809, allocations: 0.8123 MB / 0.6507 GB, free: 19.93 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0003445/0.4813, allocations: 0.5102 MB / 0.6512 GB, free: 19.61 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002084/0.4815, allocations: 189.3 kB / 0.6514 GB, free: 19.47 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001552/0.4816, allocations: 252.6 kB / 0.6516 GB, free: 19.32 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001431/0.4818, allocations: 141 kB / 0.6517 GB, free: 19.24 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.614e-05/0.4818, allocations: 25.03 kB / 0.6518 GB, free: 19.24 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 2.939e-05/0.4818, allocations: 31.81 kB / 0.6518 GB, free: 19.24 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.752e-05/0.4819, allocations: 73.84 kB / 0.6519 GB, free: 19.18 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 6.878e-05/0.4819, allocations: 140 kB / 0.652 GB, free: 19.11 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0002337/0.4822, allocations: 328 kB / 0.6523 GB, free: 18.91 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 3.707e-06/0.4822, allocations: 3.438 kB / 0.6523 GB, free: 18.91 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.703e-06/0.4822, allocations: 0 / 0.6523 GB, free: 18.91 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.399e-06/0.4822, allocations: 0 / 0.6523 GB, free: 18.91 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 58
 * Number of variables: 58
Notification: Performance of Generate backend data structure: time 0.000464/0.4826, allocations: 0.5979 MB / 0.6529 GB, free: 18.41 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 2.846e-05/0.4827, allocations: 10.38 kB / 0.6529 GB, free: 18.41 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.388e-05/0.4827, allocations: 50.08 kB / 0.653 GB, free: 18.39 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002866/0.483, allocations: 324 kB / 0.6533 GB, free: 18.15 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.987e-05/0.483, allocations: 20.06 kB / 0.6533 GB, free: 18.14 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.905e-05/0.4831, allocations: 34.27 kB / 0.6533 GB, free: 18.13 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0001595/0.4832, allocations: 169.1 kB / 0.6535 GB, free: 18.01 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.133e-05/0.4832, allocations: 7.781 kB / 0.6535 GB, free: 18.01 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.069e-05/0.4832, allocations: 8 kB / 0.6535 GB, free: 18 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 5.13e-06/0.4832, allocations: 6.906 kB / 0.6535 GB, free: 18 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 6.783e-05/0.4833, allocations: 55.06 kB / 0.6536 GB, free: 17.99 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0005624/0.4839, allocations: 498.9 kB / 0.654 GB, free: 17.66 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001161/0.484, allocations: 143.5 kB / 0.6542 GB, free: 17.57 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 3.914e-05/0.484, allocations: 42.19 kB / 0.6542 GB, free: 17.55 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.571e-05/0.484, allocations: 7.578 kB / 0.6542 GB, free: 17.55 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.239e-05/0.4841, allocations: 34.56 kB / 0.6543 GB, free: 17.5 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=20): time 1.152e-06/0.4841, allocations: 0 / 0.6543 GB, free: 17.5 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=20): time 0.0001608/0.4842, allocations: 131.9 kB / 0.6544 GB, free: 17.45 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.858e-05/0.4842, allocations: 59.34 kB / 0.6544 GB, free: 17.38 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001317/0.4844, allocations: 323.8 kB / 0.6547 GB, free: 17.16 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.005e-05/0.4844, allocations: 37.09 kB / 0.6548 GB, free: 17.12 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 4.794e-05/0.4844, allocations: 183 kB / 0.655 GB, free: 16.96 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.694e-05/0.4844, allocations: 78.7 kB / 0.655 GB, free: 16.89 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.965e-05/0.4845, allocations: 70.86 kB / 0.6551 GB, free: 16.84 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.042e-05/0.4845, allocations: 349.9 kB / 0.6554 GB, free: 16.5 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 3.599e-05/0.4846, allocations: 32.25 kB / 0.6555 GB, free: 16.49 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 5.028e-05/0.4846, allocations: 88.55 kB / 0.6555 GB, free: 16.42 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0001686/0.4848, allocations: 206.5 kB / 0.6557 GB, free: 16.3 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.935e-06/0.4848, allocations: 2.875 kB / 0.6557 GB, free: 16.3 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=41) (initialization): time 0.000143/0.4849, allocations: 181.7 kB / 0.6559 GB, free: 16.22 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.047e-05/0.485, allocations: 7.375 kB / 0.6559 GB, free: 16.22 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.3e-06/0.485, allocations: 11.7 kB / 0.6559 GB, free: 16.21 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.04e-05/0.485, allocations: 0 / 0.6559 GB, free: 16.21 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001714/0.4851, allocations: 80.8 kB / 0.656 GB, free: 16.19 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 4.839e-06/0.4851, allocations: 3.438 kB / 0.656 GB, free: 16.19 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 6.16e-05/0.4852, allocations: 34.97 kB / 0.6561 GB, free: 16.16 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 9.317e-06/0.4852, allocations: 3.625 kB / 0.6561 GB, free: 16.16 MB / 0.5262 GB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         ViralParticles.state = ViralParticles.state_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 7
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (41):
 * Single equations (assignments): 41
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 7.872e-05/0.4853, allocations: 127.7 kB / 0.6562 GB, free: 16.04 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.919e-05/0.4853, allocations: 26.41 kB / 0.6562 GB, free: 16.02 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.000125/0.4854, allocations: 131.5 kB / 0.6563 GB, free: 15.94 MB / 0.5262 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 2.865e-06/0.4854, allocations: 11.41 kB / 0.6563 GB, free: 15.93 MB / 0.5262 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.513e-06/0.4855, allocations: 0 / 0.6563 GB, free: 15.93 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.266e-06/0.4855, allocations: 0 / 0.6563 GB, free: 15.93 MB / 0.5262 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.0001449/0.4856, allocations: 181.8 kB / 0.6565 GB, free: 15.8 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.22e-07/0.4856, allocations: 0 / 0.6565 GB, free: 15.8 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0001053/0.4857, allocations: 36.39 kB / 0.6565 GB, free: 15.79 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (simulation): time 2.324e-06/0.4857, allocations: 3.984 kB / 0.6565 GB, free: 15.79 MB / 0.5262 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.879e-06/0.4857, allocations: 4 kB / 0.6566 GB, free: 15.79 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.813e-06/0.4857, allocations: 3.75 kB / 0.6566 GB, free: 15.79 MB / 0.5262 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 6.51e-07/0.4857, allocations: 0 / 0.6566 GB, free: 15.79 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.0001529/0.4859, allocations: 301.5 kB / 0.6568 GB, free: 15.56 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 4.755e-05/0.4859, allocations: 38.33 kB / 0.6569 GB, free: 15.53 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.035e-05/0.4859, allocations: 11.12 kB / 0.6569 GB, free: 15.53 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 5.288e-05/0.486, allocations: 4 kB / 0.6569 GB, free: 15.52 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 2.644e-05/0.486, allocations: 11.67 kB / 0.6569 GB, free: 15.52 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.609e-06/0.486, allocations: 3.375 kB / 0.6569 GB, free: 15.52 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 6.058e-05/0.4861, allocations: 128.2 kB / 0.657 GB, free: 15.45 MB / 0.5262 GB
Notification: Performance of sort global known variables: time 5e-08/0.4861, allocations: 0 / 0.657 GB, free: 15.45 MB / 0.5262 GB
Notification: Performance of remove unused functions: time 0.0001665/0.4863, allocations: 80.58 kB / 0.6571 GB, free: 15.44 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 5 (SusceptibleCells.state,InfectedCells.state,ViralParticles.state,RecoveredCells.state,DeadCells.state)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (20):
 * Single equations (assignments): 20
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 6.148e-05/0.4863, allocations: 89.3 kB / 0.6572 GB, free: 15.36 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0001287/0.4864, allocations: 128 kB / 0.6573 GB, free: 15.32 MB / 0.5262 GB
Notification: Performance of simCode: created event and clocks part: time 4.288e-06/0.4864, allocations: 3.781 kB / 0.6573 GB, free: 15.32 MB / 0.5262 GB
Notification: Performance of simCode: created simulation system equations: time 3.889e-05/0.4865, allocations: 54.83 kB / 0.6574 GB, free: 15.3 MB / 0.5262 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002217/0.4867, allocations: 84.14 kB / 0.6575 GB, free: 15.25 MB / 0.5262 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0007054/0.4874, allocations: 0.5933 MB / 0.658 GB, free: 14.82 MB / 0.5262 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 3.894e-05/0.4875, allocations: 101.7 kB / 0.6581 GB, free: 14.73 MB / 0.5262 GB
Notification: Performance of simCode: alias equations: time 7.26e-05/0.4875, allocations: 36.97 kB / 0.6582 GB, free: 14.71 MB / 0.5262 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001069/0.4876, allocations: 113.8 kB / 0.6583 GB, free: 14.66 MB / 0.5262 GB
Notification: Performance of SimCode: time 5.31e-07/0.4876, allocations: 0 / 0.6583 GB, free: 14.66 MB / 0.5262 GB
Notification: Performance of Templates: time 0.004759/0.4924, allocations: 3.675 MB / 0.6619 GB, free: 13 MB / 0.5262 GB
"
[Timeout remaining time 659]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2 -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics2.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.765520492102951]