Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001561/0.001561, allocations: 80.94 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001338/0.001338, allocations: 177 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.01/1.01, allocations: 177.1 MB / 203.8 MB, free: 5.492 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.704/1.704, allocations: 273.5 MB / 0.5213 GB, free: 14.71 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.424e-06/2.424e-06, allocations: 0 / 0.5954 GB, free: 2.754 MB / 0.5105 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.269e-05/2.512e-05, allocations: 2.312 kB / 0.5954 GB, free: 2.75 MB / 0.5105 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1): time 0.001188/0.001213, allocations: 0.5798 MB / 0.596 GB, free: 2.188 MB / 0.5105 GB
Notification: Performance of NFInst.instExpressions: time 0.000134/0.001347, allocations: 21.5 kB / 0.596 GB, free: 2.168 MB / 0.5105 GB
Notification: Performance of NFInst.updateImplicitVariability: time 2.19e-05/0.001369, allocations: 0 / 0.596 GB, free: 2.168 MB / 0.5105 GB
Notification: Performance of NFTyping.typeComponents: time 1.475e-05/0.001384, allocations: 3.938 kB / 0.596 GB, free: 2.164 MB / 0.5105 GB
Notification: Performance of NFTyping.typeBindings: time 4.121e-05/0.001425, allocations: 1.422 kB / 0.596 GB, free: 2.164 MB / 0.5105 GB
Notification: Performance of NFTyping.typeClassSections: time 8.78e-05/0.001513, allocations: 11.98 kB / 0.596 GB, free: 2.152 MB / 0.5105 GB
Notification: Performance of NFFlatten.flatten: time 4.724e-05/0.00156, allocations: 16.25 kB / 0.5961 GB, free: 2.141 MB / 0.5105 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.618e-05/0.001596, allocations: 4 kB / 0.5961 GB, free: 2.137 MB / 0.5105 GB
Notification: Performance of NFEvalConstants.evaluate: time 4.07e-05/0.001637, allocations: 11.98 kB / 0.5961 GB, free: 2.125 MB / 0.5105 GB
Notification: Performance of NFSimplifyModel.simplify: time 6.808e-05/0.001705, allocations: 13.28 kB / 0.5961 GB, free: 2.113 MB / 0.5105 GB
Notification: Performance of NFPackage.collectConstants: time 1.464e-05/0.00172, allocations: 4 kB / 0.5961 GB, free: 2.109 MB / 0.5105 GB
Notification: Performance of NFFlatten.collectFunctions: time 6.632e-06/0.001726, allocations: 7.938 kB / 0.5961 GB, free: 2.102 MB / 0.5105 GB
Notification: Performance of NFScalarize.scalarize: time 1.589e-05/0.001742, allocations: 1.531 kB / 0.5961 GB, free: 2.102 MB / 0.5105 GB
Notification: Performance of NFVerifyModel.verify: time 1.672e-05/0.001759, allocations: 9.203 kB / 0.5961 GB, free: 2.094 MB / 0.5105 GB
Notification: Performance of NFConvertDAE.convert: time 5.358e-05/0.001812, allocations: 7.969 kB / 0.5961 GB, free: 2.086 MB / 0.5105 GB
Notification: Performance of FrontEnd - DAE generated: time 2.535e-06/0.001815, allocations: 5.75 kB / 0.5961 GB, free: 2.082 MB / 0.5105 GB
Notification: Performance of FrontEnd: time 6.21e-07/0.001815, allocations: 0 / 0.5961 GB, free: 2.082 MB / 0.5105 GB
Notification: Performance of Transformations before backend: time 3.056e-06/0.001819, allocations: 0 / 0.5961 GB, free: 2.082 MB / 0.5105 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3
 * Number of variables: 3
Notification: Performance of Generate backend data structure: time 0.0002499/0.002068, allocations: 233 kB / 0.5963 GB, free: 1.828 MB / 0.5105 GB
Notification: Performance of prepare preOptimizeDAE: time 3.049e-05/0.002099, allocations: 16.03 kB / 0.5964 GB, free: 1.812 MB / 0.5105 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 2.257e-05/0.002121, allocations: 4.922 kB / 0.5964 GB, free: 1.809 MB / 0.5105 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 7.105e-05/0.002193, allocations: 113.4 kB / 0.5965 GB, free: 1.676 MB / 0.5105 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 7.444e-06/0.0022, allocations: 384 / 0.5965 GB, free: 1.676 MB / 0.5105 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.603e-05/0.002216, allocations: 4.375 kB / 0.5965 GB, free: 1.672 MB / 0.5105 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 5.554e-05/0.002272, allocations: 34.25 kB / 0.5965 GB, free: 1.633 MB / 0.5105 GB
Notification: Performance of preOpt findStateOrder (simulation): time 5.13e-06/0.002277, allocations: 192 / 0.5965 GB, free: 1.633 MB / 0.5105 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 6.091e-06/0.002283, allocations: 384 / 0.5965 GB, free: 1.633 MB / 0.5105 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.917e-06/0.002287, allocations: 384 / 0.5965 GB, free: 1.633 MB / 0.5105 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 1.324e-05/0.0023, allocations: 11.88 kB / 0.5965 GB, free: 1.621 MB / 0.5105 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 7.786e-05/0.002378, allocations: 61.05 kB / 0.5966 GB, free: 1.547 MB / 0.5105 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001976/0.002575, allocations: 58.58 kB / 0.5966 GB, free: 1.48 MB / 0.5105 GB
Notification: Performance of preOpt resolveLoops (simulation): time 1.785e-05/0.002593, allocations: 12.92 kB / 0.5966 GB, free: 1.469 MB / 0.5105 GB
Notification: Performance of preOpt evalFunc (simulation): time 6.753e-06/0.0026, allocations: 4 kB / 0.5967 GB, free: 1.465 MB / 0.5105 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.721e-05/0.002617, allocations: 30.56 kB / 0.5967 GB, free: 1.426 MB / 0.5105 GB
Notification: Performance of pre-optimization done (n=3): time 9.61e-07/0.002618, allocations: 0 / 0.5967 GB, free: 1.426 MB / 0.5105 GB
Notification: Performance of matching and sorting (n=3): time 8.819e-05/0.002706, allocations: 49.72 kB / 0.5967 GB, free: 1.371 MB / 0.5105 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.651e-05/0.002733, allocations: 55.41 kB / 0.5968 GB, free: 1.305 MB / 0.5105 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 4.508e-05/0.002778, allocations: 102.7 kB / 0.5969 GB, free: 1.191 MB / 0.5105 GB
Notification: Performance of collectPreVariables (initialization): time 9.118e-06/0.002787, allocations: 25.7 kB / 0.5969 GB, free: 1.16 MB / 0.5105 GB
Notification: Performance of collectInitialEqns (initialization): time 2.112e-05/0.002808, allocations: 92.12 kB / 0.597 GB, free: 1.066 MB / 0.5105 GB
Notification: Performance of collectInitialBindings (initialization): time 2.323e-05/0.002831, allocations: 15.83 kB / 0.597 GB, free: 1.051 MB / 0.5105 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 2.174e-05/0.002853, allocations: 17.72 kB / 0.597 GB, free: 1.027 MB / 0.5105 GB
Notification: Performance of setup shared object (initialization): time 6.883e-05/0.002922, allocations: 324.1 kB / 0.5973 GB, free: 0.7031 MB / 0.5105 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 8.215e-06/0.00293, allocations: 3.984 kB / 0.5973 GB, free: 0.6992 MB / 0.5105 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 7.765e-06/0.002938, allocations: 4 kB / 0.5973 GB, free: 0.6953 MB / 0.5105 GB
Notification: Performance of analyzeInitialSystem (initialization): time 4.364e-05/0.002982, allocations: 28.78 kB / 0.5974 GB, free: 0.6641 MB / 0.5105 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.493e-06/0.002983, allocations: 0 / 0.5974 GB, free: 0.6641 MB / 0.5105 GB
Notification: Performance of matching and sorting (n=6) (initialization): time 5.061e-05/0.003034, allocations: 49.69 kB / 0.5974 GB, free: 0.6094 MB / 0.5105 GB
Notification: Performance of prepare postOptimizeDAE: time 9.388e-06/0.003043, allocations: 4 kB / 0.5974 GB, free: 0.6055 MB / 0.5105 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.617e-06/0.003047, allocations: 0 / 0.5974 GB, free: 0.6055 MB / 0.5105 GB
Notification: Performance of postOpt tearingSystem (initialization): time 8.596e-06/0.003055, allocations: 4 kB / 0.5974 GB, free: 0.6016 MB / 0.5105 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 3.644e-05/0.003092, allocations: 11.94 kB / 0.5974 GB, free: 0.5938 MB / 0.5105 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.973e-06/0.003094, allocations: 0 / 0.5974 GB, free: 0.5938 MB / 0.5105 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 1.312e-05/0.003107, allocations: 4 kB / 0.5974 GB, free: 0.5898 MB / 0.5105 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.957e-06/0.003111, allocations: 1.312 kB / 0.5974 GB, free: 0.5898 MB / 0.5105 GB
Warning: Assuming fixed start value for the following 3 variables:
         V:VARIABLE(start = 10.0 fixed = true )  \"count of viral particles\" type: Real
         I:VARIABLE(start = 0.0 fixed = true )  \"count of infectious cells\" type: Real
         T:VARIABLE(start = 1e6 fixed = true )  \"count of target(susceptible) cells\" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (6):
 * Single equations (assignments): 6
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 9.262e-05/0.003203, allocations: 129.6 kB / 0.5976 GB, free: 464 kB / 0.5105 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 4.598e-06/0.003208, allocations: 4 kB / 0.5976 GB, free: 460 kB / 0.5105 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 1.771e-05/0.003226, allocations: 11.69 kB / 0.5976 GB, free: 448 kB / 0.5105 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.653e-06/0.003227, allocations: 0 / 0.5976 GB, free: 448 kB / 0.5105 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 1.262e-06/0.003229, allocations: 0 / 0.5976 GB, free: 448 kB / 0.5105 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.284e-06/0.003231, allocations: 0 / 0.5976 GB, free: 448 kB / 0.5105 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 5.38e-05/0.003285, allocations: 73.83 kB / 0.5976 GB, free: 356 kB / 0.5105 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.81e-07/0.003285, allocations: 0 / 0.5976 GB, free: 356 kB / 0.5105 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 3.448e-05/0.00332, allocations: 4 kB / 0.5977 GB, free: 352 kB / 0.5105 GB
Notification: Performance of postOpt tearingSystem (simulation): time 1.313e-06/0.003321, allocations: 0 / 0.5977 GB, free: 352 kB / 0.5105 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 9.678e-06/0.003331, allocations: 4 kB / 0.5977 GB, free: 348 kB / 0.5105 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 9.42e-07/0.003332, allocations: 1.312 kB / 0.5977 GB, free: 348 kB / 0.5105 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.92e-07/0.003333, allocations: 4 kB / 0.5977 GB, free: 344 kB / 0.5105 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 8.647e-05/0.003419, allocations: 80.19 kB / 0.5977 GB, free: 248 kB / 0.5105 GB
Notification: Performance of postOpt removeConstants (simulation): time 5.21e-06/0.003424, allocations: 4 kB / 0.5977 GB, free: 244 kB / 0.5105 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 6.833e-06/0.003431, allocations: 3.938 kB / 0.5977 GB, free: 240 kB / 0.5105 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 9.468e-06/0.003441, allocations: 0 / 0.5977 GB, free: 240 kB / 0.5105 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.245e-05/0.003453, allocations: 4 kB / 0.5977 GB, free: 236 kB / 0.5105 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 4.428e-06/0.003457, allocations: 7.984 kB / 0.5978 GB, free: 228 kB / 0.5105 GB
Notification: Performance of sorting global known variables: time 1.456e-05/0.003472, allocations: 15.72 kB / 0.5978 GB, free: 212 kB / 0.5105 GB
Notification: Performance of sort global known variables: time 4e-08/0.003472, allocations: 0 / 0.5978 GB, free: 212 kB / 0.5105 GB
Notification: Performance of remove unused functions: time 9.137e-05/0.003563, allocations: 4 kB / 0.5978 GB, free: 208 kB / 0.5105 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 3 (V,I,T)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3):
 * Single equations (assignments): 3
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 6.322e-05/0.003627, allocations: 80.42 kB / 0.5979 GB, free: 120 kB / 0.5105 GB
Notification: Performance of simCode: created initialization part: time 5.366e-05/0.00368, allocations: 22.16 kB / 0.5979 GB, free: 96 kB / 0.5105 GB
Notification: Performance of simCode: created event and clocks part: time 2.285e-06/0.003683, allocations: 0 / 0.5979 GB, free: 96 kB / 0.5105 GB
Notification: Performance of simCode: created simulation system equations: time 1.339e-05/0.003696, allocations: 20.8 kB / 0.5979 GB, free: 72 kB / 0.5105 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 5.932e-05/0.003755, allocations: 3.938 kB / 0.5979 GB, free: 68 kB / 0.5105 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.000187/0.003942, allocations: 140.4 kB / 0.598 GB, free: 15.9 MB / 0.5261 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 2.5e-05/0.003967, allocations: 59.34 kB / 0.5981 GB, free: 15.82 MB / 0.5261 GB
Notification: Performance of simCode: alias equations: time 1.17e-05/0.003979, allocations: 0 / 0.5981 GB, free: 15.82 MB / 0.5261 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 3.22e-05/0.004011, allocations: 51.38 kB / 0.5981 GB, free: 15.77 MB / 0.5261 GB
Notification: Performance of SimCode: time 5.51e-07/0.004012, allocations: 4 kB / 0.5981 GB, free: 15.77 MB / 0.5261 GB
Notification: Performance of Templates: time 0.001655/0.005666, allocations: 376.8 kB / 0.5985 GB, free: 15.41 MB / 0.5261 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1 -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.184788243845105]