Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001373/0.001373, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00166/0.00166, allocations: 181 kB / 23.36 MB, free: 1.129 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.036/1.036, allocations: 177.1 MB / 203.8 MB, free: 5.477 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.0921/0.0921, allocations: 17.46 MB / 277.7 MB, free: 11.44 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.HydrogenCombustion,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion")
translateModel(Chemical.Obsolete.Examples.HydrogenCombustion,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.593e-06/1.593e-06, allocations: 0 / 300.8 MB, free: 1.68 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.16e-05/1.319e-05, allocations: 2.312 kB / 300.8 MB, free: 1.676 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.HydrogenCombustion): time 0.03575/0.03576, allocations: 37.86 MB / 338.6 MB, free: 14.46 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.2728/0.3085, allocations: 136.5 MB / 475.1 MB, free: 25.91 MB / 410.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0008978/0.3094, allocations: 35.2 kB / 475.1 MB, free: 25.89 MB / 410.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0006549/0.3101, allocations: 368.4 kB / 475.5 MB, free: 25.73 MB / 410.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.001675/0.3118, allocations: 1.163 MB / 476.7 MB, free: 25.55 MB / 410.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005372/0.3171, allocations: 1.567 MB / 478.2 MB, free: 25.36 MB / 410.7 MB
Notification: Performance of NFFlatten.flatten: time 0.002889/0.32, allocations: 2.69 MB / 480.9 MB, free: 24.92 MB / 410.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001457/0.3215, allocations: 1.277 MB / 482.2 MB, free: 24.75 MB / 410.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.002057/0.3235, allocations: 1.759 MB / 483.9 MB, free: 24.65 MB / 410.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001542/0.3251, allocations: 1.15 MB / 485.1 MB, free: 24.57 MB / 410.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0004999/0.3256, allocations: 226.6 kB / 485.3 MB, free: 24.57 MB / 410.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.002456/0.328, allocations: 1.051 MB / 486.4 MB, free: 24.48 MB / 410.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0004143/0.3285, allocations: 0.5826 MB / 487 MB, free: 24.4 MB / 410.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0009113/0.3294, allocations: 0.8451 MB / 487.8 MB, free: 24.32 MB / 410.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.003794/0.3332, allocations: 2.969 MB / 490.8 MB, free: 23.86 MB / 410.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.417e-06/0.3332, allocations: 0 / 490.8 MB, free: 23.86 MB / 410.7 MB
Notification: Performance of FrontEnd: time 1.192e-06/0.3332, allocations: 0 / 490.8 MB, free: 23.86 MB / 410.7 MB
Notification: Performance of Transformations before backend: time 6.462e-05/0.3332, allocations: 0 / 490.8 MB, free: 23.86 MB / 410.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 492
 * Number of variables: 492
Notification: Performance of Generate backend data structure: time 0.002758/0.336, allocations: 2.502 MB / 493.3 MB, free: 22.78 MB / 410.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.371e-05/0.336, allocations: 10.69 kB / 493.3 MB, free: 22.78 MB / 410.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002571/0.3386, allocations: 1.235 MB / 494.5 MB, free: 22.54 MB / 410.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0009749/0.3396, allocations: 0.7213 MB / 495.2 MB, free: 22.16 MB / 410.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001106/0.3397, allocations: 254 kB / 495.5 MB, free: 22.03 MB / 410.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001777/0.3399, allocations: 201.6 kB / 495.7 MB, free: 22.03 MB / 410.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001475/0.3413, allocations: 1.582 MB / 497.3 MB, free: 21.53 MB / 410.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 3.188e-05/0.3414, allocations: 3.25 kB / 497.3 MB, free: 21.53 MB / 410.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001051/0.3415, allocations: 80.25 kB / 497.3 MB, free: 21.53 MB / 410.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.854e-05/0.3415, allocations: 50.5 kB / 497.4 MB, free: 21.53 MB / 410.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001187/0.3427, allocations: 1.099 MB / 498.5 MB, free: 21.26 MB / 410.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.005225/0.3479, allocations: 4.816 MB / 0.4915 GB, free: 18.76 MB / 410.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001587/0.3495, allocations: 1.22 MB / 0.4927 GB, free: 18.26 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003653/0.3499, allocations: 388.9 kB / 0.4931 GB, free: 18.17 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.003015/0.3529, allocations: 2.46 MB / 0.4955 GB, free: 16.95 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.84e-05/0.3529, allocations: 49.12 kB / 0.4955 GB, free: 16.9 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=132): time 3.006e-06/0.3529, allocations: 0 / 0.4955 GB, free: 16.9 MB / 410.7 MB
Notification: Performance of matching and sorting (n=174): time 0.007992/0.3609, allocations: 4.737 MB / 0.5001 GB, free: 14.79 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.031e-05/0.3609, allocations: 99.33 kB / 0.5002 GB, free: 14.69 MB / 410.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0005344/0.3615, allocations: 0.8155 MB / 0.501 GB, free: 14.35 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 7.181e-05/0.3615, allocations: 57.61 kB / 0.5011 GB, free: 14.29 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0002123/0.3618, allocations: 0.784 MB / 0.5019 GB, free: 13.66 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0002486/0.362, allocations: 0.6241 MB / 0.5025 GB, free: 13.14 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003054/0.3623, allocations: 383.5 kB / 0.5028 GB, free: 12.96 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 2.539e-05/0.3623, allocations: 305.1 kB / 0.5031 GB, free: 12.66 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0003075/0.3626, allocations: 255.4 kB / 0.5034 GB, free: 12.62 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0004609/0.3631, allocations: 0.828 MB / 0.5042 GB, free: 11.88 MB / 410.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0009501/0.3641, allocations: 1.36 MB / 0.5055 GB, free: 10.91 MB / 410.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.273e-06/0.3641, allocations: 2.844 kB / 0.5055 GB, free: 10.91 MB / 410.7 MB
Notification: Performance of matching and sorting (n=262) (initialization): time 0.001751/0.3658, allocations: 1.512 MB / 0.507 GB, free: 10.27 MB / 410.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.232e-05/0.3658, allocations: 19.88 kB / 0.507 GB, free: 10.27 MB / 410.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.514e-05/0.3658, allocations: 15.97 kB / 0.507 GB, free: 10.27 MB / 410.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.001044/0.3669, allocations: 0.5091 MB / 0.5075 GB, free: 10.05 MB / 410.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.00113/0.368, allocations: 0.5145 MB / 0.508 GB, free: 9.914 MB / 410.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.003387/0.3714, allocations: 7.354 MB / 0.5152 GB, free: 3.16 MB / 410.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0007455/0.3722, allocations: 71.19 kB / 0.5153 GB, free: 3.117 MB / 410.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001329/0.3723, allocations: 126.2 kB / 0.5154 GB, free: 3.094 MB / 410.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 80
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (208):
 * Single equations (assignments): 202
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 6
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 3 systems
   {(1,9,100.0%), (1,11,100.0%), (1,6,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,6), (1,10), (1,12)}
Notification: Performance of prepare postOptimizeDAE: time 0.0004237/0.3727, allocations: 242 kB / 0.5156 GB, free: 2.875 MB / 410.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001873/0.3729, allocations: 144.7 kB / 0.5158 GB, free: 2.816 MB / 410.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.002001/0.3749, allocations: 1.618 MB / 0.5173 GB, free: 1.488 MB / 410.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 8.176e-06/0.3749, allocations: 24 kB / 0.5174 GB, free: 1.465 MB / 410.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 6.512e-06/0.3749, allocations: 8.047 kB / 0.5174 GB, free: 1.457 MB / 410.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.052e-05/0.3749, allocations: 11.91 kB / 0.5174 GB, free: 1.445 MB / 410.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002792/0.3777, allocations: 2.462 MB / 0.5198 GB, free: 15.18 MB / 426.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.52e-06/0.3777, allocations: 4 kB / 0.5198 GB, free: 15.18 MB / 426.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.00103/0.3788, allocations: 399.7 kB / 0.5202 GB, free: 14.79 MB / 426.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.000988/0.3797, allocations: 451.5 kB / 0.5206 GB, free: 14.34 MB / 426.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001011/0.3798, allocations: 67.95 kB / 0.5207 GB, free: 14.28 MB / 426.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.002876/0.3827, allocations: 5.261 MB / 0.5258 GB, free: 8.762 MB / 426.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.583e-06/0.3827, allocations: 0 / 0.5258 GB, free: 8.762 MB / 426.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.002046/0.3848, allocations: 1.797 MB / 0.5276 GB, free: 6.965 MB / 426.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001942/0.385, allocations: 129.6 kB / 0.5277 GB, free: 6.84 MB / 426.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001193/0.3851, allocations: 36 kB / 0.5277 GB, free: 6.805 MB / 426.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003591/0.3854, allocations: 39.97 kB / 0.5278 GB, free: 6.766 MB / 426.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002396/0.3857, allocations: 165.6 kB / 0.5279 GB, free: 6.602 MB / 426.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0001137/0.3858, allocations: 95.91 kB / 0.528 GB, free: 6.508 MB / 426.7 MB
Notification: Performance of sorting global known variables: time 0.0003395/0.3861, allocations: 370.8 kB / 0.5284 GB, free: 6.18 MB / 426.7 MB
Notification: Performance of sort global known variables: time 8e-08/0.3861, allocations: 0 / 0.5284 GB, free: 6.18 MB / 426.7 MB
Notification: Performance of remove unused functions: time 0.0015/0.3876, allocations: 0.64 MB / 0.529 GB, free: 5.539 MB / 426.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 6
 * Number of states: 8 (H2_gas.logn,O2_gas.logn,H2O_gas.molarVolume,H2O_gas.logn,H2_gas1.logn,O2_gas1.logn,H2O_gas1.molarVolume,H2O_gas1.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (153):
 * Single equations (assignments): 148
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 5
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 3 systems
   {(1,9,100.0%), (1,6,100.0%), (1,7,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,10), (1,8)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.0006517/0.3883, allocations: 416.7 kB / 0.5294 GB, free: 5.16 MB / 426.7 MB
Notification: Performance of simCode: created initialization part: time 0.00177/0.3901, allocations: 1.705 MB / 0.531 GB, free: 3.43 MB / 426.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.524e-05/0.3901, allocations: 17.81 kB / 0.5311 GB, free: 3.41 MB / 426.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0009593/0.391, allocations: 1.028 MB / 0.5321 GB, free: 2.363 MB / 426.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0009136/0.3919, allocations: 332.8 kB / 0.5324 GB, free: 2.066 MB / 426.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.004089/0.396, allocations: 3.14 MB / 0.5354 GB, free: 14.91 MB / 442.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002779/0.3963, allocations: 370.6 kB / 0.5358 GB, free: 14.52 MB / 442.7 MB
Notification: Performance of simCode: alias equations: time 0.000998/0.3973, allocations: 408.4 kB / 0.5362 GB, free: 14.15 MB / 442.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0008514/0.3982, allocations: 498.9 kB / 0.5367 GB, free: 13.66 MB / 442.7 MB
Notification: Performance of SimCode: time 1.613e-06/0.3982, allocations: 0 / 0.5367 GB, free: 13.66 MB / 442.7 MB
Notification: Performance of Templates: time 0.03932/0.4375, allocations: 33.64 MB / 0.5695 GB, free: 12.51 MB / 474.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.sim & ./Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.HydrogenCombustion.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.236358711030334]