Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001353/0.001353, allocations: 80.88 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001466/0.001466, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.01/1.01, allocations: 177.1 MB / 203.8 MB, free: 5.477 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.08875/0.08875, allocations: 17.47 MB / 277.7 MB, free: 11.44 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.Joels57,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.513e-06/1.513e-06, allocations: 0 / 300.8 MB, free: 1.742 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.974e-05/2.125e-05, allocations: 2.312 kB / 300.8 MB, free: 1.738 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.Joels57): time 0.09412/0.09414, allocations: 84.42 MB / 385.2 MB, free: 15.75 MB / 362.7 MB
Notification: Performance of NFInst.instExpressions: time 0.2172/0.3114, allocations: 66.57 MB / 451.8 MB, free: 28.02 MB / 410.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.01112/0.3225, allocations: 233.2 kB / 452 MB, free: 28.02 MB / 410.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.006601/0.3291, allocations: 2.779 MB / 454.8 MB, free: 28.02 MB / 410.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.01944/0.3485, allocations: 9.36 MB / 464.1 MB, free: 26.19 MB / 410.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.02399/0.3725, allocations: 14.78 MB / 478.9 MB, free: 24.71 MB / 410.7 MB
Notification: Performance of NFFlatten.flatten: time 0.06121/0.4337, allocations: 91.24 MB / 0.5568 GB, free: 7.402 MB / 458.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.05622/0.49, allocations: 54.69 MB / 0.6102 GB, free: 3.645 MB / 0.4948 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.4402/0.9301, allocations: 74.65 MB / 0.6831 GB, free: 21.99 MB / 0.4949 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.07918/1.009, allocations: 50.96 MB / 0.7329 GB, free: 11.89 MB / 0.5105 GB
Notification: Performance of NFPackage.collectConstants: time 0.03434/1.044, allocations: 12.2 MB / 0.7448 GB, free: 15.68 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.05738/1.101, allocations: 17.53 MB / 0.7619 GB, free: 14.75 MB / 0.5418 GB
Notification: Performance of NFScalarize.scalarize: time 0.04337/1.144, allocations: 24.28 MB / 0.7856 GB, free: 9.906 MB / 0.5574 GB
Notification: Performance of NFVerifyModel.verify: time 0.06656/1.211, allocations: 31.12 MB / 0.816 GB, free: 14.23 MB / 0.5887 GB
Notification: Performance of NFConvertDAE.convert: time 0.4703/1.681, allocations: 87 MB / 0.901 GB, free: 62.55 MB / 0.5888 GB
Notification: Performance of FrontEnd - DAE generated: time 8.465e-06/1.681, allocations: 0 / 0.901 GB, free: 62.55 MB / 0.5888 GB
Notification: Performance of FrontEnd: time 1.192e-06/1.681, allocations: 0 / 0.901 GB, free: 62.55 MB / 0.5888 GB
Notification: Performance of Transformations before backend: time 0.002857/1.684, allocations: 0 / 0.901 GB, free: 62.55 MB / 0.5888 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 11424
 * Number of variables: 11424
Notification: Performance of Generate backend data structure: time 0.1431/1.827, allocations: 57.97 MB / 0.9576 GB, free: 44.29 MB / 0.5888 GB
Notification: Performance of prepare preOptimizeDAE: time 4.534e-05/1.827, allocations: 10.38 kB / 0.9576 GB, free: 44.29 MB / 0.5888 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.06699/1.894, allocations: 18.79 MB / 0.9759 GB, free: 33.75 MB / 0.5888 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.04983/1.944, allocations: 20.24 MB / 0.9957 GB, free: 17.43 MB / 0.5888 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.004493/1.949, allocations: 9.187 MB / 1.005 GB, free: 8.441 MB / 0.5888 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.02244/1.971, allocations: 4.566 MB / 1.009 GB, free: 5.387 MB / 0.5888 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.1557/2.127, allocations: 52.66 MB / 1.061 GB, free: 7.762 MB / 0.6356 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.00157/2.128, allocations: 30.23 kB / 1.061 GB, free: 7.75 MB / 0.6356 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.01762/2.146, allocations: 1.762 MB / 1.062 GB, free: 7.383 MB / 0.6356 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0009919/2.147, allocations: 1.061 MB / 1.063 GB, free: 6.324 MB / 0.6356 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.2919/2.439, allocations: 45.81 MB / 1.108 GB, free: 181.9 MB / 0.6356 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.3921/2.831, allocations: 173.7 MB / 1.278 GB, free: 51.63 MB / 0.6356 GB
Notification: Performance of preOpt comSubExp (simulation): time 2.09/4.92, allocations: 0.8773 GB / 2.155 GB, free: 67.62 MB / 0.6356 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0301/4.951, allocations: 16.33 MB / 2.171 GB, free: 52.75 MB / 0.6356 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.3871/5.338, allocations: 91.21 MB / 2.26 GB, free: 148.5 MB / 0.6356 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001662/5.338, allocations: 342.4 kB / 2.26 GB, free: 148.4 MB / 0.6356 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.05238/5.39, allocations: 26.81 MB / 2.287 GB, free: 145.3 MB / 0.6356 GB
Notification: Performance of pre-optimization done (n=2949): time 0.0001305/5.39, allocations: 0 / 2.287 GB, free: 145.3 MB / 0.6356 GB
Notification: Performance of matching and sorting (n=3351): time 1.057/6.447, allocations: 181.3 MB / 2.464 GB, free: 145.8 MB / 0.6356 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0004131/6.447, allocations: 446.4 kB / 2.464 GB, free: 145.6 MB / 0.6356 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.04638/6.494, allocations: 22.59 MB / 2.486 GB, free: 144.3 MB / 0.6356 GB
Notification: Performance of collectPreVariables (initialization): time 0.01184/6.506, allocations: 0.5644 MB / 2.487 GB, free: 144.3 MB / 0.6356 GB
Notification: Performance of collectInitialEqns (initialization): time 0.01102/6.517, allocations: 17.02 MB / 2.503 GB, free: 136.6 MB / 0.6356 GB
Notification: Performance of collectInitialBindings (initialization): time 0.01838/6.535, allocations: 12.13 MB / 2.515 GB, free: 128.7 MB / 0.6356 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.04407/6.579, allocations: 8.46 MB / 2.523 GB, free: 128.2 MB / 0.6356 GB
Notification: Performance of setup shared object (initialization): time 3.817e-05/6.579, allocations: 309.4 kB / 2.524 GB, free: 127.9 MB / 0.6356 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.03128/6.61, allocations: 8.852 MB / 2.532 GB, free: 127.7 MB / 0.6356 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.03323/6.644, allocations: 21.53 MB / 2.553 GB, free: 111.7 MB / 0.6356 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.05446/6.698, allocations: 36.33 MB / 2.589 GB, free: 94.26 MB / 0.6356 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0005459/6.699, allocations: 125.7 kB / 2.589 GB, free: 94.26 MB / 0.6356 GB
Notification: Performance of matching and sorting (n=5583) (initialization): time 0.844/7.543, allocations: 111 MB / 2.697 GB, free: 113 MB / 0.6356 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0003486/7.543, allocations: 193.9 kB / 2.697 GB, free: 113 MB / 0.6356 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0004966/7.544, allocations: 438.2 kB / 2.698 GB, free: 113 MB / 0.6356 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.2609/7.804, allocations: 154.5 MB / 2.849 GB, free: 40.1 MB / 0.6356 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.03316/7.838, allocations: 11.49 MB / 2.86 GB, free: 29.32 MB / 0.6356 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.4197/8.257, allocations: 60.52 MB / 2.919 GB, free: 107.5 MB / 0.6513 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.03529/8.293, allocations: 1.384 MB / 2.92 GB, free: 107.5 MB / 0.6513 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.01358/8.306, allocations: 2.121 MB / 2.923 GB, free: 107.5 MB / 0.6513 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1983
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (5439):
 * Single equations (assignments): 5430
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0315/8.338, allocations: 2.85 MB / 2.925 GB, free: 107.4 MB / 0.6513 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.01823/8.356, allocations: 2.76 MB / 2.928 GB, free: 107.4 MB / 0.6513 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.3487/8.705, allocations: 72.58 MB / 2.999 GB, free: 101.1 MB / 0.6513 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0003461/8.705, allocations: 353 kB / 2.999 GB, free: 101.1 MB / 0.6513 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0004164/8.705, allocations: 60.59 kB / 2.999 GB, free: 101.1 MB / 0.6513 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0009473/8.706, allocations: 179.3 kB / 2.999 GB, free: 100.9 MB / 0.6513 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.4235/9.13, allocations: 103.2 MB / 3.1 GB, free: 37.1 MB / 0.6513 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0002575/9.13, allocations: 14.56 kB / 3.1 GB, free: 37.09 MB / 0.6513 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.02785/9.158, allocations: 7.355 MB / 3.107 GB, free: 30.07 MB / 0.6513 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.3862/9.544, allocations: 51.24 MB / 3.157 GB, free: 103.4 MB / 0.6513 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.009449/9.554, allocations: 1.26 MB / 3.159 GB, free: 103.4 MB / 0.6513 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.1127/9.666, allocations: 36.33 MB / 3.194 GB, free: 92.36 MB / 0.6513 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.575e-06/9.666, allocations: 17.28 kB / 3.194 GB, free: 92.36 MB / 0.6513 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.3908/10.06, allocations: 85.2 MB / 3.277 GB, free: 81.05 MB / 0.6513 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.02709/10.08, allocations: 4.215 MB / 3.282 GB, free: 80.1 MB / 0.6513 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.01842/10.1, allocations: 0.891 MB / 3.282 GB, free: 79.45 MB / 0.6513 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.02923/10.13, allocations: 0.7536 MB / 3.283 GB, free: 78.92 MB / 0.6513 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01813/10.15, allocations: 3.639 MB / 3.287 GB, free: 76.16 MB / 0.6513 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.01003/10.16, allocations: 0.9724 MB / 3.288 GB, free: 75.63 MB / 0.6513 GB
Notification: Performance of sorting global known variables: time 0.01995/10.18, allocations: 11.34 MB / 3.299 GB, free: 66.02 MB / 0.6513 GB
Notification: Performance of sort global known variables: time 2.91e-07/10.18, allocations: 0 / 3.299 GB, free: 66.02 MB / 0.6513 GB
Notification: Performance of remove unused functions: time 0.1022/10.28, allocations: 15.4 MB / 3.314 GB, free: 50.97 MB / 0.6513 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 45
 * Number of states: 180 (pCO2_2000.solution.temperature,pCO2_2000.O2_free.logn,pCO2_2000.H2O.logn,pCO2_2000.relaxed.OxyHm[1].logn,pCO2_2000.relaxed.OxyHm[2].logn,pCO2_2000.relaxed.OxyHm[3].logn,pCO2_2000.relaxed.OxyHm[4].logn,pCO2_2000.relaxed.DeoxyHm[1].logn,pCO2_2000.relaxed.DeoxyHm[2].logn,pCO2_2000.relaxed.DeoxyHm[3].logn,pCO2_2000.relaxed.DeoxyHm[4].logn,pCO2_2000.relaxed.HmAH[1].logn,pCO2_2000.relaxed.HmAH[2].logn,pCO2_2000.relaxed.HmAH[3].logn,pCO2_2000.relaxed.HmAH[4].logn,pCO2_2000.relaxed.HmA[1].logn,pCO2_2000.relaxed.HmA[2].logn,pCO2_2000.relaxed.HmA[3].logn,pCO2_2000.relaxed.HmA[4].logn,pCO2_2000.relaxed.HmNH3[1].logn,pCO2_2000.relaxed.HmNH3[2].logn,pCO2_2000.relaxed.HmNH3[3].logn,pCO2_2000.relaxed.HmNH3[4].logn,pCO2_2000.relaxed.HmNH2[1].logn,pCO2_2000.relaxed.HmNH2[2].logn,pCO2_2000.relaxed.HmNH2[3].logn,pCO2_2000.relaxed.HmNH2[4].logn,pCO2_2000.relaxed.HmNHCOO[1].logn,pCO2_2000.relaxed.HmNHCOO[2].logn,pCO2_2000.relaxed.HmNHCOO[3].logn,pCO2_2000.relaxed.HmNHCOO[4].logn,pCO2_2000.tensed.OxyHm[1].logn,pCO2_2000.tensed.OxyHm[2].logn,pCO2_2000.tensed.OxyHm[3].logn,pCO2_2000.tensed.OxyHm[4].logn,pCO2_2000.tensed.DeoxyHm[1].logn,pCO2_2000.tensed.DeoxyHm[2].logn,pCO2_2000.tensed.DeoxyHm[3].logn,pCO2_2000.tensed.DeoxyHm[4].logn,pCO2_2000.tensed.HmAH[1].logn,pCO2_2000.tensed.HmAH[2].logn,pCO2_2000.tensed.HmAH[3].logn,pCO2_2000.tensed.HmAH[4].logn,pCO2_2000.tensed.HmA[1].logn,pCO2_2000.tensed.HmA[2].logn,pCO2_2000.tensed.HmA[3].logn,pCO2_2000.tensed.HmA[4].logn,pCO2_2000.tensed.HmNH3[1].logn,pCO2_2000.tensed.HmNH3[2].logn,pCO2_2000.tensed.HmNH3[3].logn,pCO2_2000.tensed.HmNH3[4].logn,pCO2_2000.tensed.HmNH2[1].logn,pCO2_2000.tensed.HmNH2[2].logn,pCO2_2000.tensed.HmNH2[3].logn,pCO2_2000.tensed.HmNH2[4].logn,pCO2_2000.tensed.HmNHCOO[1].logn,pCO2_2000.tensed.HmNHCOO[2].logn,pCO2_2000.tensed.HmNHCOO[3].logn,pCO2_2000.tensed.HmNHCOO[4].logn,pCO2_2000.CO2_free.logn,pCO2_5330.solution.temperature,pCO2_5330.O2_free.logn,pCO2_5330.H2O.logn,pCO2_5330.relaxed.OxyHm[1].logn,pCO2_5330.relaxed.OxyHm[2].logn,pCO2_5330.relaxed.OxyHm[3].logn,pCO2_5330.relaxed.OxyHm[4].logn,pCO2_5330.relaxed.DeoxyHm[1].logn,pCO2_5330.relaxed.DeoxyHm[2].logn,pCO2_5330.relaxed.DeoxyHm[3].logn,pCO2_5330.relaxed.DeoxyHm[4].logn,pCO2_5330.relaxed.HmAH[1].logn,pCO2_5330.relaxed.HmAH[2].logn,pCO2_5330.relaxed.HmAH[3].logn,pCO2_5330.relaxed.HmAH[4].logn,pCO2_5330.relaxed.HmA[1].logn,pCO2_5330.relaxed.HmA[2].logn,pCO2_5330.relaxed.HmA[3].logn,pCO2_5330.relaxed.HmA[4].logn,pCO2_5330.relaxed.HmNH3[1].logn,pCO2_5330.relaxed.HmNH3[2].logn,pCO2_5330.relaxed.HmNH3[3].logn,pCO2_5330.relaxed.HmNH3[4].logn,pCO2_5330.relaxed.HmNH2[1].logn,pCO2_5330.relaxed.HmNH2[2].logn,pCO2_5330.relaxed.HmNH2[3].logn,pCO2_5330.relaxed.HmNH2[4].logn,pCO2_5330.relaxed.HmNHCOO[1].logn,pCO2_5330.relaxed.HmNHCOO[2].logn,pCO2_5330.relaxed.HmNHCOO[3].logn,pCO2_5330.relaxed.HmNHCOO[4].logn,pCO2_5330.tensed.OxyHm[1].logn,pCO2_5330.tensed.OxyHm[2].logn,pCO2_5330.tensed.OxyHm[3].logn,pCO2_5330.tensed.OxyHm[4].logn,pCO2_5330.tensed.DeoxyHm[1].logn,pCO2_5330.tensed.DeoxyHm[2].logn,pCO2_5330.tensed.DeoxyHm[3].logn,pCO2_5330.tensed.DeoxyHm[4].logn,pCO2_5330.tensed.HmAH[1].logn,pCO2_5330.tensed.HmAH[2].logn,pCO2_5330.tensed.HmAH[3].logn,pCO2_5330.tensed.HmAH[4].logn,pCO2_5330.tensed.HmA[1].logn,pCO2_5330.tensed.HmA[2].logn,pCO2_5330.tensed.HmA[3].logn,pCO2_5330.tensed.HmA[4].logn,pCO2_5330.tensed.HmNH3[1].logn,pCO2_5330.tensed.HmNH3[2].logn,pCO2_5330.tensed.HmNH3[3].logn,pCO2_5330.tensed.HmNH3[4].logn,pCO2_5330.tensed.HmNH2[1].logn,pCO2_5330.tensed.HmNH2[2].logn,pCO2_5330.tensed.HmNH2[3].logn,pCO2_5330.tensed.HmNH2[4].logn,pCO2_5330.tensed.HmNHCOO[1].logn,pCO2_5330.tensed.HmNHCOO[2].logn,pCO2_5330.tensed.HmNHCOO[3].logn,pCO2_5330.tensed.HmNHCOO[4].logn,pCO2_5330.CO2_free.logn,pCO2_9330.solution.temperature,pCO2_9330.O2_free.logn,pCO2_9330.H2O.logn,pCO2_9330.relaxed.OxyHm[1].logn,pCO2_9330.relaxed.OxyHm[2].logn,pCO2_9330.relaxed.OxyHm[3].logn,pCO2_9330.relaxed.OxyHm[4].logn,pCO2_9330.relaxed.DeoxyHm[1].logn,pCO2_9330.relaxed.DeoxyHm[2].logn,pCO2_9330.relaxed.DeoxyHm[3].logn,pCO2_9330.relaxed.DeoxyHm[4].logn,pCO2_9330.relaxed.HmAH[1].logn,pCO2_9330.relaxed.HmAH[2].logn,pCO2_9330.relaxed.HmAH[3].logn,pCO2_9330.relaxed.HmAH[4].logn,pCO2_9330.relaxed.HmA[1].logn,pCO2_9330.relaxed.HmA[2].logn,pCO2_9330.relaxed.HmA[3].logn,pCO2_9330.relaxed.HmA[4].logn,pCO2_9330.relaxed.HmNH3[1].logn,pCO2_9330.relaxed.HmNH3[2].logn,pCO2_9330.relaxed.HmNH3[3].logn,pCO2_9330.relaxed.HmNH3[4].logn,pCO2_9330.relaxed.HmNH2[1].logn,pCO2_9330.relaxed.HmNH2[2].logn,pCO2_9330.relaxed.HmNH2[3].logn,pCO2_9330.relaxed.HmNH2[4].logn,pCO2_9330.relaxed.HmNHCOO[1].logn,pCO2_9330.relaxed.HmNHCOO[2].logn,pCO2_9330.relaxed.HmNHCOO[3].logn,pCO2_9330.relaxed.HmNHCOO[4].logn,pCO2_9330.tensed.OxyHm[1].logn,pCO2_9330.tensed.OxyHm[2].logn,pCO2_9330.tensed.OxyHm[3].logn,pCO2_9330.tensed.OxyHm[4].logn,pCO2_9330.tensed.DeoxyHm[1].logn,pCO2_9330.tensed.DeoxyHm[2].logn,pCO2_9330.tensed.DeoxyHm[3].logn,pCO2_9330.tensed.DeoxyHm[4].logn,pCO2_9330.tensed.HmAH[1].logn,pCO2_9330.tensed.HmAH[2].logn,pCO2_9330.tensed.HmAH[3].logn,pCO2_9330.tensed.HmAH[4].logn,pCO2_9330.tensed.HmA[1].logn,pCO2_9330.tensed.HmA[2].logn,pCO2_9330.tensed.HmA[3].logn,pCO2_9330.tensed.HmA[4].logn,pCO2_9330.tensed.HmNH3[1].logn,pCO2_9330.tensed.HmNH3[2].logn,pCO2_9330.tensed.HmNH3[3].logn,pCO2_9330.tensed.HmNH3[4].logn,pCO2_9330.tensed.HmNH2[1].logn,pCO2_9330.tensed.HmNH2[2].logn,pCO2_9330.tensed.HmNH2[3].logn,pCO2_9330.tensed.HmNH2[4].logn,pCO2_9330.tensed.HmNHCOO[1].logn,pCO2_9330.tensed.HmNHCOO[2].logn,pCO2_9330.tensed.HmNHCOO[3].logn,pCO2_9330.tensed.HmNHCOO[4].logn,pCO2_9330.CO2_free.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (3666):
 * Single equations (assignments): 3657
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 9
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 6 systems
   {(1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%), (1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,3), (1,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.01516/10.3, allocations: 3.53 MB / 3.317 GB, free: 48.44 MB / 0.6513 GB
Notification: Performance of simCode: created initialization part: time 0.1036/10.4, allocations: 30.36 MB / 3.347 GB, free: 19.99 MB / 0.6513 GB
Notification: Performance of simCode: created event and clocks part: time 0.001241/10.4, allocations: 380.7 kB / 3.347 GB, free: 19.6 MB / 0.6513 GB
Notification: Performance of simCode: created simulation system equations: time 0.2759/10.68, allocations: 16.38 MB / 3.363 GB, free: 147.9 MB / 0.6513 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.05477/10.73, allocations: 8.017 MB / 3.371 GB, free: 147.3 MB / 0.6513 GB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.1988/10.93, allocations: 87.48 MB / 3.456 GB, free: 119.5 MB / 0.6513 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0289/10.96, allocations: 10.48 MB / 3.467 GB, free: 118.2 MB / 0.6513 GB
Notification: Performance of simCode: alias equations: time 0.03534/11, allocations: 5.15 MB / 3.472 GB, free: 117.5 MB / 0.6513 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.04568/11.04, allocations: 7.828 MB / 3.479 GB, free: 117.3 MB / 0.6513 GB
Notification: Performance of SimCode: time 2.224e-06/11.04, allocations: 0 / 3.479 GB, free: 117.3 MB / 0.6513 GB
Notification: Performance of Templates: time 1.959/13, allocations: 0.9684 GB / 4.448 GB, free: 44.26 MB / 0.6513 GB
"
[Timeout remaining time 647]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57 -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.Joels57.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 34.58625339111313]