Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001041/0.001041, allocations: 80.88 kB / 19.94 MB, free: 4.547 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001031/0.001031, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.984/0.984, allocations: 177.1 MB / 203.8 MB, free: 5.484 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09337/0.09337, allocations: 17.46 MB / 277.7 MB, free: 11.45 MB / 266.7 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 1.893e-06/1.893e-06, allocations: 0.6094 kB / 300.8 MB, free: 1.695 MB / 266.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 1.884e-05/2.074e-05, allocations: 5.297 kB / 300.8 MB, free: 1.691 MB / 266.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery): time 0.04456/0.04458, allocations: 49.4 MB / 350.2 MB, free: 2.875 MB / 314.7 MB Notification: Performance of NFInst.instExpressions: time 0.02666/0.07124, allocations: 26.23 MB / 376.4 MB, free: 8.547 MB / 346.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.003544/0.07478, allocations: 79.38 kB / 376.5 MB, free: 8.469 MB / 346.7 MB Notification: Performance of NFTyping.typeComponents: time 0.002758/0.07754, allocations: 0.9717 MB / 377.5 MB, free: 7.488 MB / 346.7 MB Notification: Performance of NFTyping.typeBindings: time 0.008097/0.08563, allocations: 3.303 MB / 380.8 MB, free: 4.16 MB / 346.7 MB Notification: Performance of NFTyping.typeClassSections: time 0.01108/0.09671, allocations: 4.967 MB / 385.8 MB, free: 15.17 MB / 362.7 MB Notification: Performance of NFFlatten.flatten: time 0.0216/0.1183, allocations: 27.37 MB / 413.1 MB, free: 3.695 MB / 378.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.01896/0.1373, allocations: 17.18 MB / 430.3 MB, free: 2.375 MB / 394.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.2883/0.4256, allocations: 22.9 MB / 453.2 MB, free: 47.45 MB / 410.8 MB Notification: Performance of NFSimplifyModel.simplify: time 0.02754/0.4531, allocations: 16.43 MB / 469.6 MB, free: 47.45 MB / 410.8 MB Notification: Performance of NFPackage.collectConstants: time 0.01224/0.4654, allocations: 3.131 MB / 472.8 MB, free: 47.45 MB / 410.8 MB Notification: Performance of NFFlatten.collectFunctions: time 0.02056/0.4859, allocations: 5.31 MB / 478.1 MB, free: 47.45 MB / 410.8 MB Notification: Performance of NFScalarize.scalarize: time 0.0164/0.5023, allocations: 7.158 MB / 485.2 MB, free: 47.45 MB / 410.8 MB Notification: Performance of NFVerifyModel.verify: time 0.02311/0.5255, allocations: 9.413 MB / 494.6 MB, free: 46.82 MB / 410.8 MB Notification: Performance of NFConvertDAE.convert: time 0.03651/0.562, allocations: 27.24 MB / 0.5097 GB, free: 31.33 MB / 410.8 MB Notification: Performance of FrontEnd - DAE generated: time 7.574e-06/0.562, allocations: 2.656 kB / 0.5097 GB, free: 31.33 MB / 410.8 MB Notification: Performance of FrontEnd: time 1.694e-06/0.562, allocations: 0 / 0.5097 GB, free: 31.33 MB / 410.8 MB Notification: Performance of Transformations before backend: time 0.001049/0.563, allocations: 0 / 0.5097 GB, free: 31.33 MB / 410.8 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3808 * Number of variables: 3808 Notification: Performance of Generate backend data structure: time 0.03935/0.6024, allocations: 19.2 MB / 0.5284 GB, free: 13.16 MB / 410.8 MB Notification: Performance of prepare preOptimizeDAE: time 3.96e-05/0.6024, allocations: 11.59 kB / 0.5284 GB, free: 13.16 MB / 410.8 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0203/0.6227, allocations: 6.254 MB / 0.5345 GB, free: 7.004 MB / 410.8 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.01725/0.64, allocations: 6.586 MB / 0.541 GB, free: 0.8711 MB / 410.8 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.002229/0.6422, allocations: 3.052 MB / 0.5439 GB, free: 13.38 MB / 426.8 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.006693/0.6489, allocations: 1.523 MB / 0.5454 GB, free: 11.87 MB / 426.8 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.04554/0.6944, allocations: 17.58 MB / 0.5626 GB, free: 10.65 MB / 442.8 MB Notification: Performance of preOpt findStateOrder (simulation): time 0.0003608/0.6948, allocations: 6.656 kB / 0.5626 GB, free: 10.65 MB / 442.8 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.004404/0.6992, allocations: 0.5902 MB / 0.5632 GB, free: 10.06 MB / 442.8 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0002066/0.6994, allocations: 363.9 kB / 0.5635 GB, free: 9.707 MB / 442.8 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.04097/0.7404, allocations: 15.27 MB / 0.5784 GB, free: 10.46 MB / 458.8 MB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.4533/1.194, allocations: 53.65 MB / 0.6308 GB, free: 108.6 MB / 490.9 MB Notification: Performance of preOpt comSubExp (simulation): time 0.6066/1.8, allocations: 299.2 MB / 0.923 GB, free: 66.92 MB / 0.495 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.01209/1.812, allocations: 5.445 MB / 0.9283 GB, free: 61.63 MB / 0.495 GB Notification: Performance of preOpt evalFunc (simulation): time 0.06859/1.881, allocations: 27.91 MB / 0.9556 GB, free: 35.64 MB / 0.495 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 7.4e-05/1.881, allocations: 134.3 kB / 0.9557 GB, free: 35.5 MB / 0.495 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.01381/1.895, allocations: 5.735 MB / 0.9613 GB, free: 30.63 MB / 0.495 GB Notification: Performance of pre-optimization done (n=983): time 4.787e-05/1.895, allocations: 0 / 0.9613 GB, free: 30.63 MB / 0.495 GB Notification: Performance of matching and sorting (n=1117): time 0.4416/2.336, allocations: 60.37 MB / 1.02 GB, free: 134.9 MB / 0.495 GB Notification: Performance of inlineWhenForInitialization (initialization): time 8.406e-05/2.337, allocations: 164.8 kB / 1.02 GB, free: 134.8 MB / 0.495 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.007862/2.344, allocations: 7.579 MB / 1.028 GB, free: 133.2 MB / 0.495 GB Notification: Performance of collectPreVariables (initialization): time 0.003379/2.348, allocations: 210.9 kB / 1.028 GB, free: 133.2 MB / 0.495 GB Notification: Performance of collectInitialEqns (initialization): time 0.002157/2.35, allocations: 5.729 MB / 1.034 GB, free: 130 MB / 0.495 GB Notification: Performance of collectInitialBindings (initialization): time 0.00518/2.355, allocations: 4.029 MB / 1.038 GB, free: 127.6 MB / 0.495 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.004699/2.36, allocations: 2.777 MB / 1.04 GB, free: 126.9 MB / 0.495 GB Notification: Performance of setup shared object (initialization): time 3.541e-05/2.36, allocations: 309.3 kB / 1.041 GB, free: 126.6 MB / 0.495 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.004416/2.364, allocations: 2.951 MB / 1.043 GB, free: 126.2 MB / 0.495 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.005331/2.37, allocations: 7.183 MB / 1.05 GB, free: 120.2 MB / 0.495 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.01453/2.384, allocations: 12.12 MB / 1.062 GB, free: 112.4 MB / 0.495 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0001083/2.384, allocations: 40 kB / 1.062 GB, free: 112.4 MB / 0.495 GB Notification: Performance of matching and sorting (n=1861) (initialization): time 0.1711/2.555, allocations: 37 MB / 1.098 GB, free: 77.81 MB / 0.495 GB Notification: Performance of prepare postOptimizeDAE: time 8.689e-05/2.555, allocations: 68 kB / 1.099 GB, free: 77.75 MB / 0.495 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0001374/2.556, allocations: 144 kB / 1.099 GB, free: 77.61 MB / 0.495 GB Notification: Performance of postOpt tearingSystem (initialization): time 0.08036/2.636, allocations: 46.1 MB / 1.144 GB, free: 32.82 MB / 0.495 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.01046/2.646, allocations: 3.829 MB / 1.147 GB, free: 29.23 MB / 0.495 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.05677/2.703, allocations: 19.05 MB / 1.166 GB, free: 10.1 MB / 0.495 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.01018/2.713, allocations: 476 kB / 1.166 GB, free: 9.637 MB / 0.495 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.003021/2.716, allocations: 0.7069 MB / 1.167 GB, free: 8.93 MB / 0.495 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 661 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (1813): * Single equations (assignments): 1810 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of prepare postOptimizeDAE: time 0.006531/2.723, allocations: 1.024 MB / 1.168 GB, free: 8.211 MB / 0.495 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.002741/2.726, allocations: 0.9249 MB / 1.169 GB, free: 7.285 MB / 0.495 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.2743/3, allocations: 24.21 MB / 1.193 GB, free: 127.4 MB / 0.495 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.000123/3, allocations: 116.3 kB / 1.193 GB, free: 127.4 MB / 0.495 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 4.401e-05/3, allocations: 19.38 kB / 1.193 GB, free: 127.4 MB / 0.495 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0003187/3, allocations: 62.27 kB / 1.193 GB, free: 127.4 MB / 0.495 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.1285/3.129, allocations: 32.99 MB / 1.225 GB, free: 119.8 MB / 0.495 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 7.439e-05/3.129, allocations: 3.625 kB / 1.225 GB, free: 119.8 MB / 0.495 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.008759/3.138, allocations: 2.461 MB / 1.227 GB, free: 119.4 MB / 0.495 GB Notification: Performance of postOpt tearingSystem (simulation): time 0.04155/3.179, allocations: 15.23 MB / 1.242 GB, free: 112.4 MB / 0.495 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.003241/3.183, allocations: 415.7 kB / 1.243 GB, free: 112.2 MB / 0.495 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.04093/3.223, allocations: 11.38 MB / 1.254 GB, free: 102 MB / 0.495 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 3.546e-06/3.223, allocations: 4 kB / 1.254 GB, free: 102 MB / 0.495 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.117/3.34, allocations: 28.15 MB / 1.281 GB, free: 74.05 MB / 0.495 GB Notification: Performance of postOpt removeConstants (simulation): time 0.006005/3.346, allocations: 1.394 MB / 1.283 GB, free: 73.28 MB / 0.495 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.003221/3.35, allocations: 283.9 kB / 1.283 GB, free: 73 MB / 0.495 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.006403/3.356, allocations: 263.9 kB / 1.283 GB, free: 72.75 MB / 0.495 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.00296/3.359, allocations: 1.178 MB / 1.284 GB, free: 71.57 MB / 0.495 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.0009128/3.36, allocations: 334.3 kB / 1.285 GB, free: 71.24 MB / 0.495 GB Notification: Performance of sorting global known variables: time 0.003616/3.364, allocations: 3.775 MB / 1.288 GB, free: 67.86 MB / 0.495 GB Notification: Performance of sort global known variables: time 2.41e-07/3.364, allocations: 1.969 kB / 1.288 GB, free: 67.86 MB / 0.495 GB Notification: Performance of remove unused functions: time 0.0149/3.378, allocations: 5.231 MB / 1.294 GB, free: 62.77 MB / 0.495 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 15 * Number of states: 60 (solution.temperature,O2_free.logn,H2O.logn,relaxed.OxyHm[1].logn,relaxed.OxyHm[2].logn,relaxed.OxyHm[3].logn,relaxed.OxyHm[4].logn,relaxed.DeoxyHm[1].logn,relaxed.DeoxyHm[2].logn,relaxed.DeoxyHm[3].logn,relaxed.DeoxyHm[4].logn,relaxed.HmAH[1].logn,relaxed.HmAH[2].logn,relaxed.HmAH[3].logn,relaxed.HmAH[4].logn,relaxed.HmA[1].logn,relaxed.HmA[2].logn,relaxed.HmA[3].logn,relaxed.HmA[4].logn,relaxed.HmNH3[1].logn,relaxed.HmNH3[2].logn,relaxed.HmNH3[3].logn,relaxed.HmNH3[4].logn,relaxed.HmNH2[1].logn,relaxed.HmNH2[2].logn,relaxed.HmNH2[3].logn,relaxed.HmNH2[4].logn,relaxed.HmNHCOO[1].logn,relaxed.HmNHCOO[2].logn,relaxed.HmNHCOO[3].logn,relaxed.HmNHCOO[4].logn,tensed.OxyHm[1].logn,tensed.OxyHm[2].logn,tensed.OxyHm[3].logn,tensed.OxyHm[4].logn,tensed.DeoxyHm[1].logn,tensed.DeoxyHm[2].logn,tensed.DeoxyHm[3].logn,tensed.DeoxyHm[4].logn,tensed.HmAH[1].logn,tensed.HmAH[2].logn,tensed.HmAH[3].logn,tensed.HmAH[4].logn,tensed.HmA[1].logn,tensed.HmA[2].logn,tensed.HmA[3].logn,tensed.HmA[4].logn,tensed.HmNH3[1].logn,tensed.HmNH3[2].logn,tensed.HmNH3[3].logn,tensed.HmNH3[4].logn,tensed.HmNH2[1].logn,tensed.HmNH2[2].logn,tensed.HmNH2[3].logn,tensed.HmNH2[4].logn,tensed.HmNHCOO[1].logn,tensed.HmNHCOO[2].logn,tensed.HmNHCOO[3].logn,tensed.HmNHCOO[4].logn,CO2_free.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (1222): * Single equations (assignments): 1219 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of Backend phase and start with SimCode phase: time 0.003242/3.382, allocations: 1.412 MB / 1.295 GB, free: 61.75 MB / 0.495 GB Notification: Performance of simCode: created initialization part: time 0.02281/3.405, allocations: 10.1 MB / 1.305 GB, free: 52.29 MB / 0.495 GB Notification: Performance of simCode: created event and clocks part: time 0.0002844/3.405, allocations: 144.9 kB / 1.305 GB, free: 52.14 MB / 0.495 GB Notification: Performance of simCode: created simulation system equations: time 0.01456/3.419, allocations: 5.427 MB / 1.31 GB, free: 47.04 MB / 0.495 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.01092/3.43, allocations: 2.591 MB / 1.313 GB, free: 44.71 MB / 0.495 GB Error: Error parsing unit kDa: Unit not found Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.04623/3.477, allocations: 28.06 MB / 1.34 GB, free: 16.68 MB / 0.495 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.004059/3.481, allocations: 3.484 MB / 1.344 GB, free: 13.16 MB / 0.495 GB Notification: Performance of simCode: alias equations: time 0.007018/3.488, allocations: 1.724 MB / 1.345 GB, free: 11.47 MB / 0.495 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.006318/3.494, allocations: 2.67 MB / 1.348 GB, free: 8.773 MB / 0.495 GB Notification: Performance of SimCode: time 1.833e-06/3.494, allocations: 0 / 1.348 GB, free: 8.773 MB / 0.495 GB Notification: Performance of Templates: time 0.5834/4.077, allocations: 311.2 MB / 1.652 GB, free: 70.34 MB / 0.5107 GB " [Timeout remaining time 656] make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.makefile [Timeout 660] (rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 12.576363252941519]