Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008342/0.0008342, allocations: 80.94 kB / 19.94 MB, free: 4.543 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009458/0.0009458, allocations: 177 kB / 23.36 MB, free: 1.129 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9703/0.9703, allocations: 177.1 MB / 203.8 MB, free: 5.48 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09199/0.09199, allocations: 17.47 MB / 277.7 MB, free: 11.43 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction")
translateModel(Chemical.Obsolete.Examples.ExothermicReaction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.613e-06/1.613e-06, allocations: 0 / 300.8 MB, free: 1.73 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.161e-05/1.323e-05, allocations: 3.156 kB / 300.8 MB, free: 1.727 MB / 266.7 MB
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.ExothermicReaction): time 0.007485/0.007498, allocations: 8.476 MB / 309.2 MB, free: 11.59 MB / 282.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01937/0.02687, allocations: 23.21 MB / 332.5 MB, free: 4.312 MB / 298.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001032/0.0279, allocations: 27.81 kB / 332.5 MB, free: 4.285 MB / 298.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0009302/0.02883, allocations: 499.9 kB / 333 MB, free: 3.793 MB / 298.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.004214/0.03304, allocations: 2.074 MB / 335.1 MB, free: 1.703 MB / 298.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005801/0.03885, allocations: 3.133 MB / 338.2 MB, free: 14.55 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.002116/0.04096, allocations: 2.58 MB / 340.8 MB, free: 11.95 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.00131/0.04227, allocations: 1.213 MB / 342 MB, free: 10.68 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001379/0.04365, allocations: 1.712 MB / 343.7 MB, free: 8.965 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001214/0.04486, allocations: 1.126 MB / 344.8 MB, free: 7.836 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002979/0.04516, allocations: 216 kB / 345 MB, free: 7.625 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004703/0.04987, allocations: 2.581 MB / 347.6 MB, free: 5.039 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0007518/0.05062, allocations: 0.5217 MB / 348.1 MB, free: 4.516 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0006549/0.05127, allocations: 0.799 MB / 348.9 MB, free: 3.715 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.004937/0.05621, allocations: 4.708 MB / 353.6 MB, free: 14.99 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.166e-06/0.05621, allocations: 0 / 353.6 MB, free: 14.99 MB / 330.7 MB
Notification: Performance of FrontEnd: time 9.82e-07/0.05621, allocations: 4 kB / 353.6 MB, free: 14.98 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 3.546e-05/0.05625, allocations: 0 / 353.6 MB, free: 14.98 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 455
 * Number of variables: 455
Notification: Performance of Generate backend data structure: time 0.003108/0.05936, allocations: 2.633 MB / 356.3 MB, free: 12.31 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 2.604e-05/0.05938, allocations: 8.031 kB / 356.3 MB, free: 12.3 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.00108/0.06046, allocations: 0.6467 MB / 356.9 MB, free: 11.66 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0008664/0.06133, allocations: 0.7076 MB / 357.6 MB, free: 10.92 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001176/0.06145, allocations: 239 kB / 357.9 MB, free: 10.66 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001758/0.06162, allocations: 184.3 kB / 358 MB, free: 10.48 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.001338/0.06296, allocations: 1.544 MB / 359.6 MB, free: 8.898 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.583e-05/0.06299, allocations: 4.188 kB / 359.6 MB, free: 8.895 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 9.922e-05/0.06309, allocations: 76.12 kB / 359.7 MB, free: 8.82 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.196e-05/0.06311, allocations: 44 kB / 359.7 MB, free: 8.777 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001292/0.0644, allocations: 1.297 MB / 361 MB, free: 7.477 MB / 330.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004638/0.06904, allocations: 4.189 MB / 365.2 MB, free: 3.188 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002157/0.07119, allocations: 1.992 MB / 367.2 MB, free: 1.168 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.000365/0.07156, allocations: 407.4 kB / 367.6 MB, free: 0.7656 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.0045/0.07606, allocations: 3.812 MB / 371.4 MB, free: 12.93 MB / 346.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.746e-05/0.07609, allocations: 55.5 kB / 371.5 MB, free: 12.87 MB / 346.7 MB
Notification: Performance of pre-optimization done (n=122): time 2.325e-06/0.07609, allocations: 0 / 371.5 MB, free: 12.87 MB / 346.7 MB
Notification: Performance of matching and sorting (n=150): time 0.01088/0.08697, allocations: 4.589 MB / 376 MB, free: 8.207 MB / 346.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.729e-05/0.08701, allocations: 98.42 kB / 376.1 MB, free: 8.094 MB / 346.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0006885/0.0877, allocations: 0.7952 MB / 376.9 MB, free: 7.277 MB / 346.7 MB
Notification: Performance of collectPreVariables (initialization): time 5.687e-05/0.08775, allocations: 49.7 kB / 377 MB, free: 7.223 MB / 346.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0002822/0.08804, allocations: 0.7747 MB / 377.8 MB, free: 6.438 MB / 346.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.000251/0.08829, allocations: 0.5422 MB / 378.3 MB, free: 5.891 MB / 346.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0002937/0.08858, allocations: 371.3 kB / 378.7 MB, free: 5.52 MB / 346.7 MB
Notification: Performance of setup shared object (initialization): time 9.809e-05/0.08868, allocations: 365.8 kB / 379 MB, free: 5.156 MB / 346.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.000279/0.08896, allocations: 230.8 kB / 379.2 MB, free: 4.926 MB / 346.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0005924/0.08955, allocations: 0.9619 MB / 380.2 MB, free: 3.625 MB / 346.7 MB
Warning: It was not possible to determine if the initialization problem is consistent, because of not evaluable parameters/start values during compile time: solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start (fixedTemperature.T = solution_at_constant_temperature.temperature_start)
Notification: Performance of analyzeInitialSystem (initialization): time 0.001081/0.09063, allocations: 1.465 MB / 381.7 MB, free: 1.828 MB / 346.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.678e-06/0.09064, allocations: 8 kB / 381.7 MB, free: 1.82 MB / 346.7 MB
Notification: Performance of matching and sorting (n=258) (initialization): time 0.003035/0.09368, allocations: 1.673 MB / 383.4 MB, free: 128 kB / 346.7 MB
Notification: Performance of prepare postOptimizeDAE: time 2.03e-05/0.0937, allocations: 15.94 kB / 383.4 MB, free: 112 kB / 346.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.633e-05/0.09371, allocations: 24 kB / 383.4 MB, free: 88 kB / 346.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.003994/0.09771, allocations: 1.073 MB / 384.5 MB, free: 15 MB / 362.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001275/0.09898, allocations: 0.5773 MB / 385 MB, free: 14.42 MB / 362.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.005113/0.1041, allocations: 6.321 MB / 391.4 MB, free: 7.758 MB / 362.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0005125/0.1046, allocations: 75.95 kB / 391.4 MB, free: 7.684 MB / 362.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001009/0.1047, allocations: 95.97 kB / 391.5 MB, free: 7.59 MB / 362.7 MB
Warning: The initial conditions are over specified. The following 1 initial equations are redundant, so they are removed from the initialization system:
         solution_at_constant_temperature.temperature = solution_at_constant_temperature.temperature_start.
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 107
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (241):
 * Single equations (assignments): 237
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 4
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(3,6,77.8%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 2 systems
   {(1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0002863/0.105, allocations: 254 kB / 391.8 MB, free: 7.332 MB / 362.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001613/0.1052, allocations: 123.9 kB / 391.9 MB, free: 7.211 MB / 362.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.00352/0.1087, allocations: 1.815 MB / 393.7 MB, free: 5.344 MB / 362.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 9.608e-06/0.1087, allocations: 16 kB / 393.7 MB, free: 5.328 MB / 362.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 5.06e-06/0.1087, allocations: 4 kB / 393.7 MB, free: 5.324 MB / 362.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.097e-05/0.1087, allocations: 7.969 kB / 393.7 MB, free: 5.316 MB / 362.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.002114/0.1108, allocations: 1.597 MB / 395.3 MB, free: 3.648 MB / 362.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 7.213e-06/0.1108, allocations: 4 kB / 395.3 MB, free: 3.645 MB / 362.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.0008353/0.1117, allocations: 339.9 kB / 395.7 MB, free: 3.312 MB / 362.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 0.00469/0.1163, allocations: 1.171 MB / 396.8 MB, free: 2.125 MB / 362.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.0001642/0.1165, allocations: 47.92 kB / 396.9 MB, free: 2.078 MB / 362.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.006435/0.1229, allocations: 7.359 MB / 404.3 MB, free: 10.29 MB / 378.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.104e-06/0.1229, allocations: 0 / 404.3 MB, free: 10.29 MB / 378.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.003626/0.1266, allocations: 1.826 MB / 406.1 MB, free: 8.402 MB / 378.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0002025/0.1268, allocations: 111.2 kB / 406.2 MB, free: 8.293 MB / 378.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001188/0.1269, allocations: 35.94 kB / 406.2 MB, free: 8.258 MB / 378.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0003754/0.1273, allocations: 31.98 kB / 406.3 MB, free: 8.227 MB / 378.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0002433/0.1275, allocations: 129 kB / 406.4 MB, free: 8.102 MB / 378.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 6.325e-05/0.1276, allocations: 39.98 kB / 406.4 MB, free: 8.062 MB / 378.7 MB
Notification: Performance of sorting global known variables: time 0.0003188/0.1279, allocations: 371.9 kB / 406.8 MB, free: 7.688 MB / 378.7 MB
Notification: Performance of sort global known variables: time 7.1e-08/0.1279, allocations: 0 / 406.8 MB, free: 7.688 MB / 378.7 MB
Notification: Performance of remove unused functions: time 0.002349/0.1302, allocations: 1.064 MB / 407.8 MB, free: 6.621 MB / 378.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 12
 * Number of states: 7 (A1.logn,B1.logn,H2O.logn,A.logn,B.logn,H2O1.amountOfBonds,H2O1.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (137):
 * Single equations (assignments): 132
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 5
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (2,7,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(1,3), (1,1), (2,3)}
Notification: Performance of Backend phase and start with SimCode phase: time 0.001543/0.1318, allocations: 1.215 MB / 409.1 MB, free: 5.391 MB / 378.7 MB
Notification: Performance of simCode: created initialization part: time 0.001759/0.1335, allocations: 1.532 MB / 410.6 MB, free: 3.805 MB / 378.7 MB
Notification: Performance of simCode: created event and clocks part: time 2.928e-05/0.1336, allocations: 17.81 kB / 410.6 MB, free: 3.785 MB / 378.7 MB
Notification: Performance of simCode: created simulation system equations: time 0.0009039/0.1345, allocations: 1.109 MB / 411.7 MB, free: 2.605 MB / 378.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0008431/0.1353, allocations: 338.2 kB / 412.1 MB, free: 2.289 MB / 378.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.003537/0.1389, allocations: 2.756 MB / 414.8 MB, free: 15.45 MB / 394.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.0002275/0.1391, allocations: 292.5 kB / 415.1 MB, free: 15.14 MB / 394.7 MB
Notification: Performance of simCode: alias equations: time 0.0007256/0.1398, allocations: 313.9 kB / 415.4 MB, free: 14.84 MB / 394.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0006345/0.1404, allocations: 437 kB / 415.8 MB, free: 14.42 MB / 394.7 MB
Notification: Performance of SimCode: time 9.82e-07/0.1404, allocations: 0 / 415.8 MB, free: 14.42 MB / 394.7 MB
Notification: Performance of Templates: time 0.1632/0.3036, allocations: 42.93 MB / 458.8 MB, free: 126.2 MB / 410.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.sim & ./Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.ExothermicReaction.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.104897440876812]