Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001303/0.001303, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001003/0.001003, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9982/0.9982, allocations: 177.1 MB / 203.8 MB, free: 5.469 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.09078/0.09078, allocations: 17.47 MB / 277.7 MB, free: 11.42 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG")
translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.272e-06/1.272e-06, allocations: 0 / 300.8 MB, free: 1.742 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.738e-05/1.865e-05, allocations: 7.094 kB / 300.8 MB, free: 1.738 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.02983/0.02984, allocations: 32.77 MB / 333.6 MB, free: 3.531 MB / 298.7 MB
Notification: Performance of NFInst.instExpressions: time 0.005364/0.03521, allocations: 6.291 MB / 339.8 MB, free: 13.22 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002607/0.03547, allocations: 11.88 kB / 339.9 MB, free: 13.21 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.0004189/0.03589, allocations: 142.8 kB / 340 MB, free: 13.07 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.000551/0.03644, allocations: 273.8 kB / 340.3 MB, free: 12.8 MB / 314.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.001843/0.03828, allocations: 1.009 MB / 341.3 MB, free: 11.78 MB / 314.7 MB
Notification: Performance of NFFlatten.flatten: time 0.0005996/0.03888, allocations: 0.5175 MB / 341.8 MB, free: 11.26 MB / 314.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002677/0.03915, allocations: 181 kB / 342 MB, free: 11.08 MB / 314.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002711/0.03942, allocations: 323.4 kB / 342.3 MB, free: 10.76 MB / 314.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002867/0.03971, allocations: 227.5 kB / 342.5 MB, free: 10.54 MB / 314.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0001012/0.03981, allocations: 28 kB / 342.5 MB, free: 10.51 MB / 314.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.000883/0.04069, allocations: 0.5419 MB / 343.1 MB, free: 9.969 MB / 314.7 MB
Notification: Performance of NFScalarize.scalarize: time 9.51e-05/0.04079, allocations: 99.61 kB / 343.2 MB, free: 9.871 MB / 314.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001063/0.04089, allocations: 139.7 kB / 343.3 MB, free: 9.734 MB / 314.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.001266/0.04216, allocations: 1.039 MB / 344.3 MB, free: 8.691 MB / 314.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.126e-06/0.04216, allocations: 0 / 344.3 MB, free: 8.691 MB / 314.7 MB
Notification: Performance of FrontEnd: time 1.173e-06/0.04216, allocations: 0 / 344.3 MB, free: 8.691 MB / 314.7 MB
Notification: Performance of Transformations before backend: time 8.496e-06/0.04217, allocations: 4 kB / 344.4 MB, free: 8.688 MB / 314.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 65
 * Number of variables: 65
Notification: Performance of Generate backend data structure: time 0.0007348/0.04291, allocations: 0.6932 MB / 345 MB, free: 7.969 MB / 314.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.205e-05/0.04294, allocations: 8.031 kB / 345.1 MB, free: 7.961 MB / 314.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003661/0.0433, allocations: 180 kB / 345.2 MB, free: 7.785 MB / 314.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003451/0.04365, allocations: 305.5 kB / 345.5 MB, free: 7.461 MB / 314.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.805e-05/0.04367, allocations: 25.03 kB / 345.6 MB, free: 7.438 MB / 314.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.109e-05/0.0437, allocations: 28.38 kB / 345.6 MB, free: 7.41 MB / 314.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003055/0.044, allocations: 358.8 kB / 345.9 MB, free: 7.023 MB / 314.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 1.086e-05/0.04402, allocations: 7.875 kB / 345.9 MB, free: 7.016 MB / 314.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.356e-05/0.04404, allocations: 12 kB / 346 MB, free: 7.004 MB / 314.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 6.232e-06/0.04404, allocations: 4 kB / 346 MB, free: 7 MB / 314.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0003385/0.04438, allocations: 340 kB / 346.3 MB, free: 6.664 MB / 314.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001173/0.04556, allocations: 1.455 MB / 347.7 MB, free: 5.148 MB / 314.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001385/0.04569, allocations: 125.2 kB / 347.9 MB, free: 5.016 MB / 314.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0003111/0.04601, allocations: 36.84 kB / 347.9 MB, free: 4.977 MB / 314.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.001137/0.04714, allocations: 0.9116 MB / 348.8 MB, free: 4.051 MB / 314.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 2.031e-05/0.04716, allocations: 30.56 kB / 348.8 MB, free: 4.012 MB / 314.7 MB
Notification: Performance of pre-optimization done (n=9): time 1.312e-06/0.04716, allocations: 0 / 348.8 MB, free: 4.012 MB / 314.7 MB
Notification: Performance of matching and sorting (n=9): time 0.0001747/0.04734, allocations: 137.5 kB / 349 MB, free: 3.871 MB / 314.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.577e-05/0.04736, allocations: 51.41 kB / 349 MB, free: 3.809 MB / 314.7 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000212/0.04758, allocations: 355 kB / 349.4 MB, free: 3.449 MB / 314.7 MB
Notification: Performance of collectPreVariables (initialization): time 1.201e-05/0.04759, allocations: 33.7 kB / 349.4 MB, free: 3.41 MB / 314.7 MB
Notification: Performance of collectInitialEqns (initialization): time 9.752e-05/0.04769, allocations: 236.2 kB / 349.6 MB, free: 3.176 MB / 314.7 MB
Notification: Performance of collectInitialBindings (initialization): time 2.232e-05/0.04771, allocations: 43.62 kB / 349.7 MB, free: 3.133 MB / 314.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 6.992e-05/0.04778, allocations: 77.61 kB / 349.8 MB, free: 3.051 MB / 314.7 MB
Notification: Performance of setup shared object (initialization): time 8.972e-05/0.04787, allocations: 354.9 kB / 350.1 MB, free: 2.695 MB / 314.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 4.172e-05/0.04791, allocations: 30.81 kB / 350.1 MB, free: 2.664 MB / 314.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001328/0.04804, allocations: 254.1 kB / 350.4 MB, free: 2.309 MB / 314.7 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002224/0.04826, allocations: 326 kB / 350.7 MB, free: 1.879 MB / 314.7 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.456e-06/0.04827, allocations: 4 kB / 350.7 MB, free: 1.875 MB / 314.7 MB
Notification: Performance of matching and sorting (n=38) (initialization): time 0.0002642/0.04853, allocations: 261.5 kB / 351 MB, free: 1.609 MB / 314.7 MB
Notification: Performance of prepare postOptimizeDAE: time 1.57e-05/0.04855, allocations: 8 kB / 351 MB, free: 1.602 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 9.949e-06/0.04856, allocations: 8 kB / 351 MB, free: 1.594 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.443e-05/0.04857, allocations: 8.812 kB / 351 MB, free: 1.586 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002109/0.04878, allocations: 103.9 kB / 351.1 MB, free: 1.484 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 7.604e-06/0.04879, allocations: 11.94 kB / 351.1 MB, free: 1.473 MB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001244/0.04892, allocations: 43.73 kB / 351.1 MB, free: 1.43 MB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.502e-05/0.04894, allocations: 20 kB / 351.2 MB, free: 1.41 MB / 314.7 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 35
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (38):
 * Single equations (assignments): 38
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 8.837e-05/0.04903, allocations: 148.3 kB / 351.3 MB, free: 1.254 MB / 314.7 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.095e-05/0.04906, allocations: 19.98 kB / 351.3 MB, free: 1.234 MB / 314.7 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002681/0.04933, allocations: 233.7 kB / 351.5 MB, free: 0.9766 MB / 314.7 MB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 1.683e-06/0.04933, allocations: 0 / 351.5 MB, free: 0.9766 MB / 314.7 MB
Notification: Performance of postOpt constantLinearSystem (simulation): time 2.144e-06/0.04933, allocations: 3.984 kB / 351.6 MB, free: 0.9727 MB / 314.7 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.507e-06/0.04934, allocations: 4 kB / 351.6 MB, free: 0.9688 MB / 314.7 MB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.000247/0.04958, allocations: 397.4 kB / 351.9 MB, free: 0.5508 MB / 314.7 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.643e-06/0.04958, allocations: 4 kB / 351.9 MB, free: 0.5469 MB / 314.7 MB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 7.314e-06/0.04959, allocations: 0 / 351.9 MB, free: 0.5469 MB / 314.7 MB
Notification: Performance of postOpt tearingSystem (simulation): time 2.134e-06/0.04959, allocations: 0 / 351.9 MB, free: 0.5469 MB / 314.7 MB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 3.647e-06/0.0496, allocations: 0 / 351.9 MB, free: 0.5469 MB / 314.7 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 1.092e-06/0.0496, allocations: 4.062 kB / 352 MB, free: 0.543 MB / 314.7 MB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 2.225e-06/0.0496, allocations: 4 kB / 352 MB, free: 0.5391 MB / 314.7 MB
Notification: Performance of postOpt symbolicJacobian (simulation): time 6.267e-05/0.04966, allocations: 94.67 kB / 352 MB, free: 436 kB / 314.7 MB
Notification: Performance of postOpt removeConstants (simulation): time 2.655e-05/0.04969, allocations: 23.81 kB / 352.1 MB, free: 412 kB / 314.7 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.548e-05/0.04971, allocations: 3.953 kB / 352.1 MB, free: 408 kB / 314.7 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.623e-05/0.04975, allocations: 0 / 352.1 MB, free: 408 kB / 314.7 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 9.468e-06/0.04976, allocations: 0 / 352.1 MB, free: 408 kB / 314.7 MB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 1.803e-06/0.04976, allocations: 0 / 352.1 MB, free: 408 kB / 314.7 MB
Notification: Performance of sorting global known variables: time 0.0001148/0.04988, allocations: 164.7 kB / 352.2 MB, free: 240 kB / 314.7 MB
Notification: Performance of sort global known variables: time 4e-08/0.04988, allocations: 0 / 352.2 MB, free: 240 kB / 314.7 MB
Notification: Performance of remove unused functions: time 0.0003741/0.05025, allocations: 191.3 kB / 352.4 MB, free: 48 kB / 314.7 MB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1):
 * Single equations (assignments): 1
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of Backend phase and start with SimCode phase: time 0.0003698/0.05062, allocations: 291.7 kB / 352.7 MB, free: 15.75 MB / 330.7 MB
Notification: Performance of simCode: created initialization part: time 0.0001619/0.05078, allocations: 129.6 kB / 352.8 MB, free: 15.62 MB / 330.7 MB
Notification: Performance of simCode: created event and clocks part: time 1.107e-05/0.05079, allocations: 4 kB / 352.8 MB, free: 15.62 MB / 330.7 MB
Notification: Performance of simCode: created simulation system equations: time 7.123e-06/0.0508, allocations: 8.797 kB / 352.8 MB, free: 15.61 MB / 330.7 MB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.0002441/0.05105, allocations: 82.3 kB / 352.9 MB, free: 15.54 MB / 330.7 MB
Error: Error parsing unit kDa: Unit not found
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.0009378/0.05198, allocations: 0.5458 MB / 353.5 MB, free: 14.96 MB / 330.7 MB
Notification: Performance of simCode: some other stuff during SimCode phase: time 4.677e-05/0.05203, allocations: 88.61 kB / 353.6 MB, free: 14.85 MB / 330.7 MB
Notification: Performance of simCode: alias equations: time 0.0001727/0.0522, allocations: 82.34 kB / 353.6 MB, free: 14.77 MB / 330.7 MB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.0001519/0.05235, allocations: 127.3 kB / 353.8 MB, free: 14.65 MB / 330.7 MB
Notification: Performance of SimCode: time 7.71e-07/0.05236, allocations: 7.938 kB / 353.8 MB, free: 14.64 MB / 330.7 MB
Notification: Performance of Templates: time 0.008959/0.06131, allocations: 7.181 MB / 361 MB, free: 7.512 MB / 330.7 MB
"
[Timeout remaining time 660]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.sim & ./Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG -abortSlowSimulation -alarm=240 -s gbode -gbm=radauIIA3 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 2.7922083232551813]