Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009586/0.0009586, allocations: 80.75 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009524/0.0009524, allocations: 181 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.04/1.04, allocations: 177.1 MB / 203.8 MB, free: 5.477 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1023/0.1023, allocations: 17.47 MB / 277.7 MB, free: 11.43 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3")
translateModel(Chemical.Examples.debug.EnzymeKinetics3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.225e-06/2.225e-06, allocations: 0.6094 kB / 300.8 MB, free: 1.719 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.683e-05/2.906e-05, allocations: 3.406 kB / 300.8 MB, free: 1.715 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics3): time 0.04544/0.04547, allocations: 45.13 MB / 345.9 MB, free: 7.188 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01648/0.06195, allocations: 11.86 MB / 357.8 MB, free: 11.27 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001947/0.0639, allocations: 111.1 kB / 357.9 MB, free: 11.16 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.003236/0.06713, allocations: 2.194 MB / 360.1 MB, free: 8.957 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.002759/0.06989, allocations: 1.955 MB / 362 MB, free: 6.988 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005335/0.07523, allocations: 4.524 MB / 366.5 MB, free: 2.445 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.003926/0.07915, allocations: 4.787 MB / 371.3 MB, free: 13.64 MB / 346.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0008726/0.08003, allocations: 0.8735 MB / 372.2 MB, free: 12.66 MB / 346.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001707/0.08173, allocations: 2.631 MB / 374.8 MB, free: 10.03 MB / 346.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001672/0.08341, allocations: 2.046 MB / 376.9 MB, free: 7.977 MB / 346.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0003036/0.08371, allocations: 404 kB / 377.3 MB, free: 7.582 MB / 346.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.003138/0.08685, allocations: 2.168 MB / 379.4 MB, free: 5.41 MB / 346.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0006607/0.08751, allocations: 1.374 MB / 380.8 MB, free: 4.031 MB / 346.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.0009469/0.08845, allocations: 1.504 MB / 382.3 MB, free: 2.523 MB / 346.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.004144/0.0926, allocations: 5.664 MB / 388 MB, free: 12.84 MB / 362.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.939e-06/0.0926, allocations: 3.984 kB / 388 MB, free: 12.84 MB / 362.7 MB
Notification: Performance of FrontEnd: time 1.303e-06/0.0926, allocations: 0 / 388 MB, free: 12.84 MB / 362.7 MB
Notification: Performance of Transformations before backend: time 2.485e-05/0.09263, allocations: 0 / 388 MB, free: 12.84 MB / 362.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.004785/0.09741, allocations: 5.191 MB / 393.2 MB, free: 7.59 MB / 362.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.039e-05/0.09745, allocations: 16.03 kB / 393.2 MB, free: 7.574 MB / 362.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002069/0.09952, allocations: 1.996 MB / 395.2 MB, free: 5.578 MB / 362.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001742/0.1013, allocations: 1.689 MB / 396.9 MB, free: 3.793 MB / 362.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.000309/0.1016, allocations: 0.6375 MB / 397.5 MB, free: 3.082 MB / 362.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003096/0.1019, allocations: 404.2 kB / 397.9 MB, free: 2.688 MB / 362.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01152/0.1134, allocations: 4.943 MB / 402.9 MB, free: 13.71 MB / 378.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 9.018e-05/0.1135, allocations: 4.141 kB / 402.9 MB, free: 13.7 MB / 378.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0003685/0.1139, allocations: 164.1 kB / 403 MB, free: 13.54 MB / 378.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0006503/0.1145, allocations: 0.591 MB / 403.6 MB, free: 12.95 MB / 378.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.01088/0.1254, allocations: 5.917 MB / 409.5 MB, free: 7.004 MB / 378.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02838/0.1538, allocations: 15.4 MB / 424.9 MB, free: 7.48 MB / 394.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001771/0.1555, allocations: 1.391 MB / 426.3 MB, free: 6.074 MB / 394.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001237/0.1568, allocations: 0.8572 MB / 427.2 MB, free: 5.215 MB / 394.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01208/0.1689, allocations: 9.357 MB / 436.5 MB, free: 11.84 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.622e-05/0.1689, allocations: 52.56 kB / 436.6 MB, free: 11.78 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=227): time 4.418e-06/0.1689, allocations: 0 / 436.6 MB, free: 11.78 MB / 410.7 MB
Notification: Performance of matching and sorting (n=324): time 0.1792/0.3481, allocations: 17.01 MB / 453.6 MB, free: 101.1 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.623e-05/0.3481, allocations: 76.28 kB / 453.7 MB, free: 101.1 MB / 410.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.002042/0.3501, allocations: 1.836 MB / 455.5 MB, free: 100.9 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0006162/0.3508, allocations: 67.08 kB / 455.6 MB, free: 100.8 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.000899/0.3517, allocations: 1.93 MB / 457.5 MB, free: 100.1 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0008598/0.3525, allocations: 1.125 MB / 458.6 MB, free: 99.46 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001333/0.3538, allocations: 0.7888 MB / 459.4 MB, free: 99.41 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 2.731e-05/0.3539, allocations: 301.9 kB / 459.7 MB, free: 99.11 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.001625/0.3555, allocations: 1.286 MB / 461 MB, free: 99.1 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001711/0.3572, allocations: 2.394 MB / 463.4 MB, free: 97.75 MB / 410.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.006356/0.3636, allocations: 6.241 MB / 469.6 MB, free: 96.23 MB / 410.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.128414878156036]