Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008622/0.0008622, allocations: 80.81 kB / 19.94 MB, free: 4.547 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009315/0.0009315, allocations: 173 kB / 23.36 MB, free: 1.133 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.051/1.051, allocations: 177.1 MB / 203.8 MB, free: 5.457 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.0952/0.0952, allocations: 17.46 MB / 277.7 MB, free: 11.42 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.212e-06/1.212e-06, allocations: 0 / 300.8 MB, free: 1.758 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.059e-05/1.18e-05, allocations: 4.344 kB / 300.8 MB, free: 1.754 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.03676/0.03677, allocations: 45.13 MB / 345.9 MB, free: 7.176 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.016/0.05277, allocations: 11.87 MB / 357.8 MB, free: 11.25 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.002023/0.0548, allocations: 107.1 kB / 357.9 MB, free: 11.15 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.003787/0.05858, allocations: 2.179 MB / 360.1 MB, free: 8.957 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.00356/0.06214, allocations: 1.966 MB / 362 MB, free: 6.977 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005476/0.06762, allocations: 4.52 MB / 366.5 MB, free: 2.438 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.004816/0.07244, allocations: 4.795 MB / 371.3 MB, free: 13.62 MB / 346.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001049/0.07348, allocations: 0.8657 MB / 372.2 MB, free: 12.66 MB / 346.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.002904/0.07639, allocations: 2.635 MB / 374.8 MB, free: 10.02 MB / 346.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001947/0.07833, allocations: 2.046 MB / 376.9 MB, free: 7.965 MB / 346.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0003802/0.07871, allocations: 404 kB / 377.3 MB, free: 7.57 MB / 346.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.003995/0.08271, allocations: 2.168 MB / 379.4 MB, free: 5.398 MB / 346.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0007173/0.08343, allocations: 1.378 MB / 380.8 MB, free: 4.016 MB / 346.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001088/0.08451, allocations: 1.504 MB / 382.3 MB, free: 2.508 MB / 346.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.004744/0.08926, allocations: 5.664 MB / 388 MB, free: 12.82 MB / 362.7 MB
Notification: Performance of FrontEnd - DAE generated: time 4.108e-06/0.08926, allocations: 8 kB / 388 MB, free: 12.82 MB / 362.7 MB
Notification: Performance of FrontEnd: time 1.653e-06/0.08926, allocations: 0 / 388 MB, free: 12.82 MB / 362.7 MB
Notification: Performance of Transformations before backend: time 3.335e-05/0.0893, allocations: 0 / 388 MB, free: 12.82 MB / 362.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.004971/0.09427, allocations: 5.199 MB / 393.2 MB, free: 7.562 MB / 362.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.651e-05/0.0943, allocations: 8.031 kB / 393.2 MB, free: 7.555 MB / 362.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.002177/0.09648, allocations: 1.992 MB / 395.2 MB, free: 5.562 MB / 362.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001875/0.09836, allocations: 1.689 MB / 396.9 MB, free: 3.777 MB / 362.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0006502/0.09901, allocations: 0.6297 MB / 397.5 MB, free: 3.074 MB / 362.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003299/0.09934, allocations: 404.2 kB / 397.9 MB, free: 2.68 MB / 362.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.004151/0.1035, allocations: 4.955 MB / 402.9 MB, free: 13.69 MB / 378.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.253e-05/0.1035, allocations: 4.141 kB / 402.9 MB, free: 13.68 MB / 378.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001759/0.1037, allocations: 164.1 kB / 403 MB, free: 13.52 MB / 378.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.000393/0.1041, allocations: 0.5871 MB / 403.6 MB, free: 12.93 MB / 378.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00486/0.109, allocations: 5.913 MB / 409.5 MB, free: 6.992 MB / 378.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0169/0.1259, allocations: 15.39 MB / 424.9 MB, free: 7.477 MB / 394.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.001822/0.1277, allocations: 1.405 MB / 426.3 MB, free: 6.059 MB / 394.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0008859/0.1286, allocations: 0.8533 MB / 427.2 MB, free: 5.203 MB / 394.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01044/0.139, allocations: 9.361 MB / 436.5 MB, free: 11.82 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.339e-05/0.139, allocations: 52.56 kB / 436.6 MB, free: 11.76 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=227): time 2.655e-06/0.1391, allocations: 0 / 436.6 MB, free: 11.76 MB / 410.7 MB
Notification: Performance of matching and sorting (n=324): time 0.1806/0.3196, allocations: 17 MB / 453.6 MB, free: 101 MB / 410.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.001e-05/0.3197, allocations: 77.56 kB / 453.7 MB, free: 101 MB / 410.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001866/0.3216, allocations: 1.834 MB / 455.5 MB, free: 100.8 MB / 410.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.0003257/0.3219, allocations: 69.7 kB / 455.6 MB, free: 100.7 MB / 410.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.00093/0.3228, allocations: 1.927 MB / 457.5 MB, free: 99.98 MB / 410.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0008036/0.3236, allocations: 1.123 MB / 458.6 MB, free: 99.37 MB / 410.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.001586/0.3252, allocations: 0.7913 MB / 459.4 MB, free: 99.32 MB / 410.7 MB
Notification: Performance of setup shared object (initialization): time 2.791e-05/0.3252, allocations: 306.2 kB / 459.7 MB, free: 99.03 MB / 410.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.001941/0.3272, allocations: 1.288 MB / 461 MB, free: 99.01 MB / 410.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.002111/0.3293, allocations: 2.385 MB / 463.4 MB, free: 97.67 MB / 410.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.0071/0.3364, allocations: 6.24 MB / 469.6 MB, free: 96.14 MB / 410.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.1181578831747174]