Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0008492/0.0008492, allocations: 80.94 kB / 19.94 MB, free: 4.543 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0008856/0.0008856, allocations: 177 kB / 23.36 MB, free: 1.129 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.042/1.042, allocations: 177.1 MB / 203.8 MB, free: 5.461 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1004/0.1004, allocations: 17.46 MB / 277.7 MB, free: 11.42 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2")
translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.413e-06/1.413e-06, allocations: 0 / 300.8 MB, free: 1.738 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.034e-05/2.175e-05, allocations: 3.625 kB / 300.8 MB, free: 1.734 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction2): time 0.04043/0.04045, allocations: 45.54 MB / 346.3 MB, free: 6.773 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01603/0.05648, allocations: 12.25 MB / 358.6 MB, free: 10.46 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.002855/0.05933, allocations: 99.25 kB / 358.6 MB, free: 10.37 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.004237/0.06357, allocations: 2.315 MB / 361 MB, free: 8.039 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.004263/0.06783, allocations: 2.009 MB / 363 MB, free: 6.016 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005979/0.07381, allocations: 4.578 MB / 367.6 MB, free: 1.418 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.005999/0.07981, allocations: 5.028 MB / 372.6 MB, free: 12.37 MB / 346.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001561/0.08137, allocations: 1.393 MB / 374 MB, free: 10.86 MB / 346.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.003637/0.08501, allocations: 3.146 MB / 377.1 MB, free: 7.703 MB / 346.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.002857/0.08787, allocations: 2.366 MB / 379.5 MB, free: 5.332 MB / 346.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001083/0.08895, allocations: 0.5273 MB / 380 MB, free: 4.805 MB / 346.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004128/0.09308, allocations: 2.332 MB / 382.3 MB, free: 2.469 MB / 346.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001452/0.09453, allocations: 1.702 MB / 384 MB, free: 0.7617 MB / 346.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002239/0.09677, allocations: 1.777 MB / 385.8 MB, free: 14.98 MB / 362.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.008909/0.1057, allocations: 6.63 MB / 392.5 MB, free: 8.328 MB / 362.7 MB
Notification: Performance of FrontEnd - DAE generated: time 3.657e-06/0.1057, allocations: 0 / 392.5 MB, free: 8.328 MB / 362.7 MB
Notification: Performance of FrontEnd: time 1.142e-06/0.1057, allocations: 0 / 392.5 MB, free: 8.328 MB / 362.7 MB
Notification: Performance of Transformations before backend: time 0.0001106/0.1058, allocations: 0 / 392.5 MB, free: 8.328 MB / 362.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1431
 * Number of variables: 1431
Notification: Performance of Generate backend data structure: time 0.008311/0.1141, allocations: 5.927 MB / 398.4 MB, free: 2.336 MB / 362.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.016e-05/0.1141, allocations: 12.03 kB / 398.4 MB, free: 2.324 MB / 362.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.003651/0.1178, allocations: 2.093 MB / 400.5 MB, free: 236 kB / 362.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002621/0.1204, allocations: 1.756 MB / 402.2 MB, free: 14.4 MB / 378.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0004461/0.1209, allocations: 0.7282 MB / 403 MB, free: 13.59 MB / 378.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0005207/0.1214, allocations: 460.3 kB / 403.4 MB, free: 13.14 MB / 378.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.006615/0.128, allocations: 5.08 MB / 408.5 MB, free: 8.008 MB / 378.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 6.91e-05/0.1281, allocations: 192 / 408.5 MB, free: 8.008 MB / 378.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002942/0.1284, allocations: 188.1 kB / 408.7 MB, free: 7.824 MB / 378.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0005164/0.1289, allocations: 0.5449 MB / 409.2 MB, free: 7.277 MB / 378.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.006401/0.1353, allocations: 5.148 MB / 414.4 MB, free: 2.113 MB / 378.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.02574/0.161, allocations: 16.51 MB / 430.9 MB, free: 1.492 MB / 394.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.002438/0.1635, allocations: 1.547 MB / 432.4 MB, free: 15.93 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001339/0.1648, allocations: 0.937 MB / 433.4 MB, free: 14.99 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01268/0.1775, allocations: 10.24 MB / 443.6 MB, free: 4.723 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.506e-05/0.1775, allocations: 52.56 kB / 443.7 MB, free: 4.664 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=289): time 3.066e-06/0.1775, allocations: 0 / 443.7 MB, free: 4.664 MB / 410.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.0931953699328005]