Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001455/0.001455, allocations: 80.94 kB / 19.94 MB, free: 4.543 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001853/0.001853, allocations: 181 kB / 23.36 MB, free: 1.129 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.077/1.077, allocations: 177.2 MB / 203.8 MB, free: 5.504 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1167/0.1167, allocations: 17.47 MB / 277.7 MB, free: 11.45 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction")
translateModel(Chemical.Examples.SimpleReactionsWithJunction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.154e-06/2.154e-06, allocations: 4.5 kB / 300.8 MB, free: 1.75 MB / 266.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.35e-05/2.566e-05, allocations: 8.812 kB / 300.8 MB, free: 1.742 MB / 266.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction): time 0.07872/0.07875, allocations: 52.73 MB / 353.5 MB, free: 15.61 MB / 330.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02196/0.1007, allocations: 14.25 MB / 367.7 MB, free: 1.293 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00588/0.1066, allocations: 150.9 kB / 367.9 MB, free: 1.145 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.006544/0.1131, allocations: 2.726 MB / 370.6 MB, free: 14.4 MB / 346.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.007995/0.1211, allocations: 2.842 MB / 373.5 MB, free: 11.54 MB / 346.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.008971/0.1301, allocations: 5.1 MB / 378.6 MB, free: 6.418 MB / 346.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r_ref.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r_ref.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r_ref.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r_ref.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r_ref.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r_ref.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r_ref.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r_ref.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r_ref.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r_ref.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r_ref.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.01044/0.1405, allocations: 7.517 MB / 386.1 MB, free: 14.87 MB / 362.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002424/0.143, allocations: 1.74 MB / 387.8 MB, free: 13.02 MB / 362.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.007504/0.1505, allocations: 4.554 MB / 392.4 MB, free: 8.453 MB / 362.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.00512/0.1556, allocations: 3.445 MB / 395.8 MB, free: 5 MB / 362.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001925/0.1575, allocations: 0.7344 MB / 396.6 MB, free: 4.266 MB / 362.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005457/0.163, allocations: 2.59 MB / 399.1 MB, free: 1.672 MB / 362.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001803/0.1648, allocations: 2.457 MB / 401.6 MB, free: 15.21 MB / 378.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.003889/0.1687, allocations: 2.56 MB / 404.2 MB, free: 12.64 MB / 378.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01165/0.1803, allocations: 8.863 MB / 413 MB, free: 3.746 MB / 378.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.071e-06/0.1803, allocations: 0 / 413 MB, free: 3.746 MB / 378.7 MB
Notification: Performance of FrontEnd: time 1.683e-06/0.1803, allocations: 0 / 413 MB, free: 3.746 MB / 378.7 MB
Notification: Performance of Transformations before backend: time 0.0003184/0.1806, allocations: 0 / 413 MB, free: 3.746 MB / 378.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 2093
 * Number of variables: 2093
Notification: Performance of Generate backend data structure: time 0.0111/0.1917, allocations: 8.575 MB / 421.6 MB, free: 11.09 MB / 394.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.785e-05/0.1918, allocations: 12.03 kB / 421.6 MB, free: 11.08 MB / 394.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.004472/0.1963, allocations: 3.225 MB / 424.8 MB, free: 7.855 MB / 394.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.004584/0.2008, allocations: 2.595 MB / 427.4 MB, free: 5.172 MB / 394.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0008499/0.2017, allocations: 1.105 MB / 428.5 MB, free: 3.93 MB / 394.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.001174/0.2029, allocations: 0.6487 MB / 429.2 MB, free: 3.281 MB / 394.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01009/0.213, allocations: 7.621 MB / 436.8 MB, free: 11.58 MB / 410.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 8.553e-05/0.213, allocations: 192 / 436.8 MB, free: 11.58 MB / 410.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0003552/0.2134, allocations: 262 kB / 437.1 MB, free: 11.33 MB / 410.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0006382/0.214, allocations: 0.8423 MB / 437.9 MB, free: 10.48 MB / 410.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.008797/0.2228, allocations: 8.172 MB / 446.1 MB, free: 2.258 MB / 410.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.2047/0.4275, allocations: 24.85 MB / 470.9 MB, free: 85.19 MB / 410.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003344/0.4309, allocations: 2.424 MB / 473.4 MB, free: 84.71 MB / 410.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001848/0.4327, allocations: 1.423 MB / 474.8 MB, free: 84.62 MB / 410.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01734/0.4501, allocations: 15.02 MB / 489.8 MB, free: 77 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.369e-05/0.4501, allocations: 65.5 kB / 489.9 MB, free: 76.93 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=440): time 4.459e-06/0.4501, allocations: 0 / 489.9 MB, free: 76.93 MB / 410.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.3260678038932383]